Mercurial > repos > nilesh > rseqc

comparison read_duplication.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 09846d5169fa
children 1421603cc95b
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58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_read_duplication" name="Read Duplication" version="@WRAPPER_VERSION@"> 1 <tool id="rseqc_read_duplication" name="Read Duplication" version="@TOOL_VERSION@">
2 <description>determines reads duplication rate with sequence-based and mapping-based strategies</description> 2 <description>determines reads duplication rate with sequence-based and mapping-based strategies</description>
3 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
7 7
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
34 <test> 34 <test>
35 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 35 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
36 <param name="rscript_output" value="true" /> 36 <param name="rscript_output" value="true" />
37 <output name="outputxls" file="output.pos.DupRate.xls" /> 37 <output name="outputxls" file="output.pos.DupRate.xls" />
38 <output name="outputseqxls" file="output.seq.DupRate.xls" /> 38 <output name="outputseqxls" file="output.seq.DupRate.xls" />
39 <output name="outputr" file="output.DupRate_plot.r" /> 39 <output name="outputr" file="output.DupRate_plot_r" />
40 <output name="outputpdf" file="output.DupRate_plot.pdf" compare="sim_size" /> 40 <output name="outputpdf" file="output.DupRate_plot.pdf" compare="sim_size" />
41 </test> 41 </test>
42 </tests> 42 </tests>
43 43
44 <help><![CDATA[ 44 <help><![CDATA[