Mercurial > repos > nilesh > rseqc

comparison read_quality.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 34e4c586e3c0
children 1421603cc95b
comparison
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58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_read_quality" name="Read Quality" version="@WRAPPER_VERSION@"> 1 <tool id="rseqc_read_quality" name="Read Quality" version="@TOOL_VERSION@">
2 <description>determines Phred quality score</description> 2 <description>determines Phred quality score</description>
3 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>rseqc_macros.xml</import> 5 <import>rseqc_macros.xml</import>
6 </macros> 6 </macros>
7 7
8 <expand macro="requirements"> 8 <expand macro="requirements">
41 41
42 <tests> 42 <tests>
43 <test> 43 <test>
44 <param name="input" value="pairend_strandspecific_51mer_hg19_random.bam"/> 44 <param name="input" value="pairend_strandspecific_51mer_hg19_random.bam"/>
45 <param name="rscript_output" value="true" /> 45 <param name="rscript_output" value="true" />
46 <output name="outputr" file="output.qual.r"/> 46 <output name="outputr" file="output.qual_r"/>
47 <output name="outputheatpdf" file="output.qual.heatmap.pdf" compare="sim_size" /> 47 <output name="outputheatpdf" file="output.qual.heatmap.pdf" compare="sim_size" />
48 <output name="outputboxpdf" file="output.qual.boxplot.pdf" compare="sim_size" /> 48 <output name="outputboxpdf" file="output.qual.boxplot.pdf" compare="sim_size" />
49 </test> 49 </test>
50 </tests> 50 </tests>
51 51