Mercurial > repos > nilesh > rseqc

comparison tin.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 1a052c827e88
children 1421603cc95b
comparison
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58:1a052c827e88 59:dbedfc5f5a3c
1 <tool id="rseqc_tin" name="Transcript Integrity Number" version="@WRAPPER_VERSION@.1"> 1 <tool id="rseqc_tin" name="Transcript Integrity Number" version="@TOOL_VERSION@.1">
2 <description> 2 <description>
3 evaluates RNA integrity at a transcript level 3 evaluates RNA integrity at a transcript level
4 </description> 4 </description>
5 5 <expand macro="bio_tools"/>
6 <macros> 6 <macros>
7 <import>rseqc_macros.xml</import> 7 <import>rseqc_macros.xml</import>
8 </macros> 8 </macros>
9 9
10 <expand macro="requirements" /> 10 <expand macro="requirements" />
47 47
48 <!-- PDF Files contain R version, must avoid checking for diff --> 48 <!-- PDF Files contain R version, must avoid checking for diff -->
49 <tests> 49 <tests>
50 <test> 50 <test>
51 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/> 51 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
52 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed"/> 52 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
53 <output name="outputsummary"> 53 <output name="outputsummary">
54 <assert_contents> 54 <assert_contents>
55 <has_line_matching expression="^Bam_file\tTIN\(mean\)\tTIN\(median\)\tTIN\(stdev\)$" /> 55 <has_line_matching expression="^Bam_file\tTIN\(mean\)\tTIN\(median\)\tTIN\(stdev\)$" />
56 <has_line_matching expression="^input\.bam\t8\.8709677419\d+\t8\.8709677419\d+\t0\.0$" /> 56 <has_line_matching expression="^input\.bam\t8\.8709677419\d+\t8\.8709677419\d+\t0\.0$" />
57 </assert_contents> 57 </assert_contents>