Mercurial > repos > nilesh > rseqc

comparison read_quality.xml @ 50:f242ee103277 draft

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planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee
author lparsons
date Tue, 03 May 2016 16:36:57 -0400
parents 6b33e31bda10
children 09846d5169fa
comparison
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49:6b33e31bda10 50:f242ee103277
34 <data format="txt" name="outputr" from_work_dir="output.qual.r" label="${tool.name} on ${on_string} (R Script)" /> 34 <data format="txt" name="outputr" from_work_dir="output.qual.r" label="${tool.name} on ${on_string} (R Script)" />
35 <data format="pdf" name="outputheatpdf" from_work_dir="output.qual.heatmap.pdf" label="${tool.name} on ${on_string} (Heatmap PDF)" /> 35 <data format="pdf" name="outputheatpdf" from_work_dir="output.qual.heatmap.pdf" label="${tool.name} on ${on_string} (Heatmap PDF)" />
36 <data format="pdf" name="outputboxpdf" from_work_dir="output.qual.boxplot.pdf" label="${tool.name} on ${on_string} (Boxplot PDF)" /> 36 <data format="pdf" name="outputboxpdf" from_work_dir="output.qual.boxplot.pdf" label="${tool.name} on ${on_string} (Boxplot PDF)" />
37 </outputs> 37 </outputs>
38 38
39 <!-- Unable to succefully run this script with test data
40 <tests> 39 <tests>
41 <test> 40 <test>
42 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bigwig"/> 41 <param name="input" value="pairend_strandspecific_51mer_hg19_random.bam"/>
43 <output name="outputr" file="output.qual.r"/> 42 <output name="outputr" file="output.qual.r"/>
44 <output name="outputheatpdf" file="output.qual.heatmap.pdf"/>
45 <output name="outputboxpdf" file="output.qual.boxplot.pdf"/>
46 </test> 43 </test>
47 </tests> 44 </tests>
48 -->
49 45
50 <help><![CDATA[ 46 <help><![CDATA[
51 read_quality.py 47 read_quality.py
52 +++++++++++++++ 48 +++++++++++++++
53 49