Mercurial > repos > nilesh > rseqc

diff bam2wig.xml @ 53:080fd5739bb4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 734a31ae8ba22f0d75bda696c4856ee3e274e1ba
author iuc
date Tue, 20 Mar 2018 05:37:48 -0400
parents 09846d5169fa
children dbedfc5f5a3c
line wrap: on
line diff
--- a/bam2wig.xml	Tue Nov 21 14:55:32 2017 -0500
+++ b/bam2wig.xml	Tue Mar 20 05:37:48 2018 -0400
@@ -37,7 +37,7 @@
         #end if
 
         #if str($wigsum_type.wigsum_type_selector) == "normalize":
-            -t ${wigsum.totalwig}
+            -t ${wigsum_type.totalwig}
         #end if
 
         @MULTIHITS@
@@ -81,8 +81,8 @@
         <test>
             <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
             <param name="chromsize" value="hg19.chrom.sizes"/>
-            <param name="multihits_type.multihits_type_selector" value="skipmultihits"/>
-            <param name="multihits_type.mapq" value="20"/>
+            <param name="multihits_type_selector" value="skip_multihits"/>
+            <param name="mapq" value="20"/>
             <output name="output" file="testwig.wig"/>
         </test>
         <test>
@@ -93,6 +93,13 @@
             <output name="outputfwd" file="testwig.Forward.wig"/>
             <output name="outputrv" file="testwig.Reverse.wig"/>
         </test>
+        <test>
+            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
+            <param name="chromsize" value="hg19.chrom.sizes"/>
+            <param name="wigsum_type_selector" value="normalize"/>
+            <param name="totalwig" value="100"/>
+            <output name="output" file="testwig_wigsum100.wig"/>
+        </test>
     </tests>
 
     <help><![CDATA[