Mercurial > repos > nilesh > rseqc

diff test-data/output.clipping_profile.r @ 51:09846d5169fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 37fb1988971807c6a072e1afd98eeea02329ee83
author iuc
date Tue, 14 Mar 2017 10:23:21 -0400
parents 6b33e31bda10
children
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--- a/test-data/output.clipping_profile.r	Tue May 03 16:36:57 2016 -0400
+++ b/test-data/output.clipping_profile.r	Tue Mar 14 10:23:21 2017 -0400
@@ -1,5 +1,6 @@
 pdf("output.clipping_profile.pdf")
-read_pos=c(0,1,2,3,4,5,6,7,8,9,44,45,46,47,48,49,50)
-count=c(16,12,11,8,6,5,1,1,1,1,1,2,2,2,3,4,4)
-plot(read_pos,1-(count/40),col="blue",main="clipping profile",xlab="Position of reads",ylab="Mappability",type="b")
+read_pos=c(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50)
+clip_count=c(16.0,12.0,11.0,8.0,7.0,6.0,1.0,1.0,1.0,1.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0,1.0,1.0,2.0,3.0,4.0,4.0)
+nonclip_count= 40 - clip_count
+plot(read_pos, nonclip_count*100/(clip_count+nonclip_count),col="blue",main="clipping profile",xlab="Position of read",ylab="Non-clipped %",type="b")
 dev.off()