Mercurial > repos > nilesh > rseqc
diff deletion_profile.xml @ 60:1421603cc95b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
| author | iuc |
|---|---|
| date | Sat, 26 Nov 2022 15:19:14 +0000 |
| parents | dbedfc5f5a3c |
| children | 5968573462fa |
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--- a/deletion_profile.xml Sat Dec 18 19:41:19 2021 +0000 +++ b/deletion_profile.xml Sat Nov 26 15:19:14 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="rseqc_deletion_profile" name="Deletion Profile" version="@TOOL_VERSION@"> +<tool id="rseqc_deletion_profile" name="Deletion Profile" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> <description> calculates the distributions of deleted nucleotides across reads </description> @@ -14,7 +14,8 @@ <version_command><![CDATA[deletion_profile.py --version]]></version_command> <command><![CDATA[ - deletion_profile.py -i '${input}' -o output -l ${readlength} -n ${readnum} -q ${mapq} + @BAM_SAM_INPUTS@ + deletion_profile.py -i 'input.${extension}' -o output -l ${read_align_length} -n ${read_num} -q ${mapq} ]]> </command> @@ -35,7 +36,7 @@ <tests> <test> <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> - <param name="readlength" value="101" /> + <param name="read_align_length" value="101" /> <param name="rscript_output" value="true" /> <output name="outputpdf" file="output.deletion_profile.pdf" compare="sim_size" /> <output name="outputxls" file="output.deletion_profile.txt" />