Mercurial > repos > nilesh > rseqc
diff inner_distance.xml @ 60:1421603cc95b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
author | iuc |
---|---|
date | Sat, 26 Nov 2022 15:19:14 +0000 |
parents | dbedfc5f5a3c |
children | 5968573462fa |
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--- a/inner_distance.xml Sat Dec 18 19:41:19 2021 +0000 +++ b/inner_distance.xml Sat Nov 26 15:19:14 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="rseqc_inner_distance" name="Inner Distance" version="@TOOL_VERSION@.1"> +<tool id="rseqc_inner_distance" name="Inner Distance" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> <description>calculate the inner distance (or insert size) between two paired RNA reads</description> <expand macro="bio_tools"/> <macros> @@ -12,7 +12,8 @@ <version_command><![CDATA[inner_distance.py --version]]></version_command> <command><![CDATA[ - inner_distance.py -i '${input}' -o output -r '${refgene}' + @BAM_SAM_INPUTS@ + inner_distance.py -i 'input.${extension}' -o output -r '${refgene}' --sample-size ${sample_size} --lower-bound ${lowerBound} --upper-bound ${upperBound}