Mercurial > repos > nilesh > rseqc
diff junction_saturation.xml @ 60:1421603cc95b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
author | iuc |
---|---|
date | Sat, 26 Nov 2022 15:19:14 +0000 |
parents | dbedfc5f5a3c |
children | 5968573462fa |
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--- a/junction_saturation.xml Sat Dec 18 19:41:19 2021 +0000 +++ b/junction_saturation.xml Sat Nov 26 15:19:14 2022 +0000 @@ -1,19 +1,16 @@ -<tool id="rseqc_junction_saturation" name="Junction Saturation" version="@TOOL_VERSION@.1"> +<tool id="rseqc_junction_saturation" name="Junction Saturation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> <description>detects splice junctions from each subset and compares them to reference gene model</description> <expand macro="bio_tools"/> <macros> <import>rseqc_macros.xml</import> </macros> - <expand macro="requirements" /> - <expand macro="stdio" /> - <version_command><![CDATA[junction_saturation.py --version]]></version_command> - <command><![CDATA[ + @BAM_SAM_INPUTS@ junction_saturation.py - --input-file '${input}' + --input-file 'input.${extension}' --refgene '${refgene}' --out-prefix output --min-intron ${min_intron}