Mercurial > repos > nilesh > rseqc

diff read_duplication.xml @ 60:1421603cc95b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
author iuc
date Sat, 26 Nov 2022 15:19:14 +0000
parents dbedfc5f5a3c
children 5968573462fa
line wrap: on
line diff
--- a/read_duplication.xml	Sat Dec 18 19:41:19 2021 +0000
+++ b/read_duplication.xml	Sat Nov 26 15:19:14 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="rseqc_read_duplication" name="Read Duplication" version="@TOOL_VERSION@">
+<tool id="rseqc_read_duplication" name="Read Duplication" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
     <description>determines reads duplication rate with sequence-based and mapping-based strategies</description>
     <expand macro="bio_tools"/>
     <macros>
@@ -12,7 +12,8 @@
     <version_command><![CDATA[read_duplication.py --version]]></version_command>
 
     <command><![CDATA[
-        read_duplication.py -i '${input}' -o output -u ${upLimit} -q ${mapq}
+        @BAM_SAM_INPUTS@
+        read_duplication.py -i 'input.${extension}' -o output -u ${upLimit} -q ${mapq}
         ]]>
     </command>