Mercurial > repos > nilesh > rseqc
diff geneBody_coverage.xml @ 61:5968573462fa draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
| author | iuc |
|---|---|
| date | Sat, 10 Dec 2022 11:23:05 +0000 |
| parents | 1421603cc95b |
| children | 27e16a30667a |
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--- a/geneBody_coverage.xml Sat Nov 26 15:19:14 2022 +0000 +++ b/geneBody_coverage.xml Sat Dec 10 11:23:05 2022 +0000 @@ -1,9 +1,9 @@ <tool id="rseqc_geneBody_coverage" name="Gene Body Coverage (BAM)" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> <description>read coverage over gene body</description> - <expand macro="bio_tools"/> <macros> <import>rseqc_macros.xml</import> </macros> + <expand macro="bio_tools"/> <expand macro="requirements" /> <expand macro="stdio" /> <version_command><![CDATA[geneBody_coverage.py --version]]></version_command> @@ -50,12 +50,12 @@ </inputs> <outputs> - <data name="outputcurvespdf" format="pdf" from_work_dir="output.geneBodyCoverage.curves.pdf" label="${tool.name} on ${on_string} (Curves pdf)" /> - <data name="outputheatmappdf" format="pdf" from_work_dir="output.geneBodyCoverage.heatMap.pdf" label="${tool.name} on ${on_string} (HeatMap pdf)"> + <data name="outputcurvespdf" format="pdf" from_work_dir="output.geneBodyCoverage.curves.pdf" label="${tool.name} on ${on_string}: curves (PDF)" /> + <data name="outputheatmappdf" format="pdf" from_work_dir="output.geneBodyCoverage.heatMap.pdf" label="${tool.name} on ${on_string}: heatmap (PDF)"> <filter>batch_mode['batch_mode_selector'] == 'merge' and len(inputs) >= 3</filter> </data> - <expand macro="rscript_output_data" filename="output.geneBodyCoverage.r" /> - <data name="outputtxt" format="txt" from_work_dir="output.geneBodyCoverage.txt" label="${tool.name} on ${on_string} (text)" /> + <expand macro="rscript_output_data" filename="output.geneBodyCoverage.r" label="${tool.name} on ${on_string}: Rscript"/> + <data name="outputtxt" format="txt" from_work_dir="output.geneBodyCoverage.txt" label="${tool.name} on ${on_string}: stats (TXT)" /> </outputs> <!-- PDF Files contain R version, must avoid checking for diff -->