Mercurial > repos > nilesh > rseqc
diff inner_distance.xml @ 61:5968573462fa draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
| author | iuc |
|---|---|
| date | Sat, 10 Dec 2022 11:23:05 +0000 |
| parents | 1421603cc95b |
| children | 27e16a30667a |
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--- a/inner_distance.xml Sat Nov 26 15:19:14 2022 +0000 +++ b/inner_distance.xml Sat Dec 10 11:23:05 2022 +0000 @@ -1,10 +1,11 @@ <tool id="rseqc_inner_distance" name="Inner Distance" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> <description>calculate the inner distance (or insert size) between two paired RNA reads</description> - <expand macro="bio_tools"/> <macros> <import>rseqc_macros.xml</import> </macros> + <expand macro="bio_tools"/> + <expand macro="requirements" /> <expand macro="stdio" /> @@ -34,10 +35,10 @@ </inputs> <outputs> - <expand macro="pdf_output_data" filename="output.inner_distance_plot.pdf" /> - <data format="txt" name="outputtxt" from_work_dir="output.inner_distance.txt" label="${tool.name} on ${on_string} (text)"/> - <data format="txt" name="outputfreqtxt" from_work_dir="output.inner_distance_freq.txt" label="${tool.name} on ${on_string} (frequency text)" /> - <expand macro="rscript_output_data" filename="output.inner_distance_plot.r" /> + <expand macro="pdf_output_data" filename="output.inner_distance_plot.pdf" label="${tool.name} on ${on_string}: plot (PDF)"/> + <data format="txt" name="outputtxt" from_work_dir="output.inner_distance.txt" label="${tool.name} on ${on_string}: TXT"/> + <data format="txt" name="outputfreqtxt" from_work_dir="output.inner_distance_freq.txt" label="${tool.name} on ${on_string}: frequency (TXT)" /> + <expand macro="rscript_output_data" filename="output.inner_distance_plot.r" label="${tool.name} on ${on_string}: Rscript"/> </outputs> <tests>