Mercurial > repos > nilesh > rseqc
diff test-data/output.junctionSaturation_plot.r @ 49:6b33e31bda10 draft
Uploaded tar based on https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc 1a3c419bc0ded7c40cb2bc3e7c87bfb01ddfeba2
| author | lparsons |
|---|---|
| date | Thu, 16 Jul 2015 17:43:43 -0400 |
| parents | |
| children | 09846d5169fa |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.junctionSaturation_plot.r Thu Jul 16 17:43:43 2015 -0400 @@ -0,0 +1,12 @@ +pdf('output.junctionSaturation_plot.pdf') +x=c(5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100) +y=c(0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,1,1) +z=c(0,0,0,0,0,0,1,1,1,1,1,1,1,2,2,2,2,2,2,3) +w=c(0,0,0,0,0,0,1,1,1,1,1,1,1,1,1,1,1,1,1,2) +m=max(0,0,0) +n=min(0,0,0) +plot(x,z/1000,xlab='percent of total reads',ylab='Number of splicing junctions (x1000)',type='o',col='blue',ylim=c(n,m)) +points(x,y/1000,type='o',col='red') +points(x,w/1000,type='o',col='green') +legend(5,0, legend=c("All junctions","known junctions", "novel junctions"),col=c("blue","red","green"),lwd=1,pch=1) +dev.off()