Mercurial > repos > nilesh > rseqc

diff read_quality.xml @ 59:dbedfc5f5a3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 34e4c586e3c0
children 1421603cc95b
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--- a/read_quality.xml	Thu Nov 28 15:56:37 2019 -0500
+++ b/read_quality.xml	Sat Dec 18 19:41:19 2021 +0000
@@ -1,6 +1,6 @@
-<tool id="rseqc_read_quality" name="Read Quality" version="@WRAPPER_VERSION@">
+<tool id="rseqc_read_quality" name="Read Quality" version="@TOOL_VERSION@">
     <description>determines Phred quality score</description>
-
+    <expand macro="bio_tools"/>
     <macros>
         <import>rseqc_macros.xml</import>
     </macros>
@@ -43,7 +43,7 @@
         <test>
             <param name="input" value="pairend_strandspecific_51mer_hg19_random.bam"/>
             <param name="rscript_output" value="true" />
-            <output name="outputr" file="output.qual.r"/>
+            <output name="outputr" file="output.qual_r"/>
             <output name="outputheatpdf" file="output.qual.heatmap.pdf" compare="sim_size" />
             <output name="outputboxpdf" file="output.qual.boxplot.pdf" compare="sim_size" />
         </test>