Mercurial > repos > nilesh > rseqc
diff bam_stat.xml @ 63:27e16a30667a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit d7544582d5599c67a284faf9232cd2ccc4daa1de
| author | iuc |
|---|---|
| date | Tue, 09 Apr 2024 11:24:55 +0000 |
| parents | 5968573462fa |
| children |
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--- a/bam_stat.xml Wed Feb 22 15:06:01 2023 +0000 +++ b/bam_stat.xml Tue Apr 09 11:24:55 2024 +0000 @@ -5,37 +5,28 @@ <macros> <import>rseqc_macros.xml</import> </macros> - <expand macro="bio_tools"/> - - <expand macro="requirements" /> - - <expand macro="stdio" /> - + <expand macro="requirements"/> + <expand macro="stdio"/> <version_command><![CDATA[bam_stat.py --version]]></version_command> - <command><![CDATA[ @BAM_SAM_INPUTS@ bam_stat.py -i 'input.${extension}' -q ${mapq} > '${output}' ]]> </command> - <inputs> - <expand macro="bam_sam_param" /> - <expand macro="mapq_param" /> + <expand macro="bam_sam_param"/> + <expand macro="mapq_param"/> </inputs> - <outputs> <data format="txt" name="output" label="${tool.name} on ${on_string}: stats"/> </outputs> - <tests> <test> - <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> - <output name="output" file="output.bamstats.txt" /> + <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/> + <output name="output" file="output.bamstats.txt"/> </test> </tests> - <help><![CDATA[ bam_stat.py +++++++++++ @@ -68,6 +59,5 @@ ]]> </help> - - <expand macro="citations" /> + <expand macro="citations"/> </tool>