Mercurial > repos > nilesh > rseqc

diff read_distribution.xml @ 63:27e16a30667a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit d7544582d5599c67a284faf9232cd2ccc4daa1de
author iuc
date Tue, 09 Apr 2024 11:24:55 +0000
parents 5968573462fa
children
line wrap: on
line diff
--- a/read_distribution.xml	Wed Feb 22 15:06:01 2023 +0000
+++ b/read_distribution.xml	Tue Apr 09 11:24:55 2024 +0000
@@ -4,36 +4,28 @@
         <import>rseqc_macros.xml</import>
     </macros>
     <expand macro="bio_tools"/>
-
-    <expand macro="requirements" />
-
-    <expand macro="stdio" />
-
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
     <version_command><![CDATA[read_distribution.py --version]]></version_command>
-
     <command><![CDATA[
         @BAM_SAM_INPUTS@
         read_distribution.py -i 'input.${extension}' -r '${refgene}' > '${output}'
         ]]>
     </command>
-
     <inputs>
-        <expand macro="bam_sam_param" />
-        <expand macro="refgene_param" />
+        <expand macro="bam_sam_param"/>
+        <expand macro="refgene_param"/>
     </inputs>
-
     <outputs>
-        <data format="txt" name="output"  label="${tool.name} on ${on_string}: stats (TXT)"/>
+        <data format="txt" name="output" label="${tool.name} on ${on_string}: stats (TXT)"/>
     </outputs>
-
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
             <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
             <output name="output" file="output.read_distribution.txt"/>
         </test>
     </tests>
-
     <help><![CDATA[
 read_distribution.py
 ++++++++++++++++++++
@@ -91,7 +83,5 @@
 
 ]]>
     </help>
-
-    <expand macro="citations" />
-
+    <expand macro="citations"/>
 </tool>