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view tool_dependencies.xml @ 33:073c77ce5e94

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export PYTHONPATH during install, note python 2.7 requirement
author lparsons
date Tue, 15 Oct 2013 12:58:55 -0400
parents 580ee0c4bc4e
children ff21a055413b
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<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.0.1">
        <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="numpy" version="1.7.1">
        <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="rseqc" version="2.3.7">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/rseqc/files/RSeQC-2.3.7.tar.gz</action>
                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            RSeQC version 2.3.7, documentation available at http://dldcc-web.brc.bcm.edu/lilab/liguow/CGI/rseqc/_build/html/index.html.
            Requires gcc and python 2.7.
        </readme>
    </package>

</tool_dependency>