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author | lparsons |
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date | Tue, 03 May 2016 16:36:57 -0400 |
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== RSeQC Galaxy Wrapper == This is a Galaxy wrapper for the RSeQC RNA-Seq QC package. ** Installation ** Installation from a tool shed provides the necessary tool dependencies, R, numpy, and RSeQC. Otherwise, make sure that R and the RSeQC scripts are in the path and run under the Galaxy environment. Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them. Restart the Galaxy server. Requires Python 2.7 ** Attribution ** The RSeQC package and associated documentation can be found at: http://rseqc.sourceforge.net/ The galaxy wrapper code was written by Nilesh Kavthekar, School of Engineering and Applied Sciences, University of Pennsylvania, Class of 2016 Modified by Lance Parsons, Lewis-Sigler Institute for Integrative Genomics, Princeton University, Bjorn Gruning, University of Freiburg, bjoern.gruening@gmail.com