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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="zlib" version="1.2.8">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action>
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7 <action type="shell_command">./configure</action>
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8 <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action>
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9 <action type="shell_command">make</action>
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10 <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action>
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11 <action type="set_environment">
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12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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13 </action>
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14 </actions>
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15 </install>
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16 <readme>
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17 Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
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18 </readme>
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19 </package>
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20 <package name="sickle" version="1.2.8">
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21 <install version="1.0">
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22 <actions>
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23 <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action>
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24 <action type="shell_command">make</action>
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25 <action type="move_file">
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26 <source>sickle</source>
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27 <destination>$INSTALL_DIR/bin</destination>
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28 </action>
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29 <action type="set_environment">
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30 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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31 </action>
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32 </actions>
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33 </install>
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34 <readme>
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35 Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
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36 </readme>
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37 </package>
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38 </tool_dependency>
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