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annotate tool_dependencies.xml @ 7:dd2ec1b37e96 draft default tip

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Added support for the "pair"-data collection type.
author yhoogstrate
date Fri, 20 Feb 2015 02:49:16 -0500
parents c6a790326d1e
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="sickle" version="1.21.0">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action>
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7 <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action>
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8 <action type="shell_command">make</action>
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9 <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action>
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10 <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action>
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11 <action type="shell_command">cd ./sickle &amp;&amp; make LIBS="-L$INSTALL_DIR/zlib/lib -lz"</action>
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12 <action type="move_file">
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13 <source>sickle/sickle</source>
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14 <destination>$INSTALL_DIR/bin</destination>
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15 </action>
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16 <action type="set_environment">
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 Sickle requires a C compiler; GCC or clang are recommended. Sickle relies on Heng Li's kseq.h, which is bundled with the source. It also requires zlib, which is included in this repo.
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23 </readme>
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24 </package>
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25 </tool_dependency>