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comparison tool_dependencies.xml @ 0:21af95369da7

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author nilesh
date Wed, 10 Jul 2013 00:13:27 -0400
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children 98e35d7ce5c9
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-1:000000000000 0:21af95369da7
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="zlib" version="1.2.8">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action>
7 <action type="shell_command">./configure</action>
8 <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action>
9 <action type="shell_command">make</action>
10 <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action>
11 <action type="set_environment">
12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
13 </action>
14 </actions>
15 </install>
16 <readme>
17 Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
18 </readme>
19 </package>
20 <package name="sickle" version="1.2.8">
21 <install version="1.0">
22 <actions>
23 <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action>
24 <action type="shell_command">make</action>
25 <action type="move_file">
26 <source>sickle</source>
27 <destination>$INSTALL_DIR/bin</destination>
28 </action>
29 <action type="set_environment">
30 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
31 </action>
32 </actions>
33 </install>
34 <readme>
35 Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
36 </readme>
37 </package>
38 </tool_dependency>