Mercurial > repos > nilesh > sickle

diff tool_dependencies.xml @ 0:21af95369da7

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author nilesh
date Wed, 10 Jul 2013 00:13:27 -0400
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children 98e35d7ce5c9
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jul 10 00:13:27 2013 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="zlib" version="1.2.8">
+        <install version="1.0">
+            <actions>
+            	<action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action>
+                <action type="shell_command">./configure</action>
+                 <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action>
+                <action type="shell_command">make</action>
+                <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        	Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
+        </readme>
+    </package>
+    <package name="sickle" version="1.2.8">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>sickle</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
+        </readme>
+    </package>
+</tool_dependency>