Mercurial > repos > nilesh > vcftools

diff tool_dependencies.xml @ 0:348fa4f58ef5 draft

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author nilesh
date Wed, 10 Jul 2013 17:11:00 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jul 10 17:11:00 2013 -0400
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vcftools" version="0.1.11">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/vcftools/files/vcftools_0.1.11.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools</action>                
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project
+        </readme>
+    </package>
+    
+</tool_dependency>