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view tool_dependencies.xml @ 11:27fd495c6658 draft

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author nilesh
date Wed, 10 Jul 2013 17:47:40 -0400
parents 90fe42320bd1
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<?xml version="1.0"?>
<tool_dependency>
    <package name="vcftools" version="0.1.11">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/vcftools/files/vcftools_0.1.11.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools make install</action>                
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project
        </readme>
    </package>
    
</tool_dependency>