Mercurial > repos > nilshomer > srma_wrapper
diff srma_ref.loc @ 0:9d60d2fce247 default tip
Migrated tool version 0.1.1 from old tool shed archive to new tool shed repository
| author | nilshomer |
|---|---|
| date | Tue, 07 Jun 2011 17:43:07 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/srma_ref.loc Tue Jun 07 17:43:07 2011 -0400 @@ -0,0 +1,25 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of SRMA indexed sequences data files. You will need +#to create these data files and then create a srma_ref.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The srma_ref.loc +#file has this format (white space characters are TAB characters): +# +#<build> <fasta_file> +# +#So, for example, if you had hg18 indexed stored in +#/depot/data2/galaxy/srma/hg18/, +#then the srma_ref.loc entry would look like this: +# +#hg18 /depot/data2/galaxy/srma/hg18/hg18.fa +# +#and your /depot/data2/galaxy/srma/hg18/ directory +#would contain hg18.fa.*.brg and hg18.fa.*.bif files: +#hg18.fa +#hg18.fa.dict +#...etc... +# +#The dictionary file for each reference (ex. hg18.fa.dict) must be +#created with Picard (http://picard.sourceforge.net). +# +20079 /Users/nhomer/hg/galaxy-central/srma/DH10B.fa