#This is a sample file distributed with Galaxy that enables tools
#to use a directory of SRMA indexed sequences data files.  You will need
#to create these data files and then create a srma_ref.loc file 
#similar to this one (store it in this directory) that points to 
#the directories in which those files are stored. The srma_ref.loc 
#file has this format (white space characters are TAB characters):
#
#<build>	<fasta_file>
#
#So, for example, if you had hg18 indexed stored in 
#/depot/data2/galaxy/srma/hg18/, 
#then the srma_ref.loc entry would look like this:
#
#hg18	/depot/data2/galaxy/srma/hg18/hg18.fa
#
#and your /depot/data2/galaxy/srma/hg18/ directory
#would contain hg18.fa.*.brg and hg18.fa.*.bif files:
#hg18.fa
#hg18.fa.dict
#...etc...
#
#The dictionary file for each reference (ex. hg18.fa.dict) must be 
#created with Picard (http://picard.sourceforge.net).
#
20079	/Users/nhomer/hg/galaxy-central/srma/DH10B.fa