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comparison GetNormalizedExpression.xml @ 18:3eb0e0d10f36 draft

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author ning
date Wed, 20 Mar 2013 00:06:40 -0400
parents e42c12a40df6
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17:64bd08a2577c 18:3eb0e0d10f36
1 <tool id="Get_Normalized_Expressions" name="Get Normalized Expressions"> 1 <tool id="Get_Normalized_Expressions" name="Get Normalized Expressions">
2 <description>Calculate normalization factors and get the normalized expression matrix</description> 2 <description>Calculate normalization factors and get the normalized expression matrix</description>
3 <command>R --quiet --slave --file=$GALAXY_ROOT_DIR/tools/EBSeq/GetNormalizedExpression.R --args $Gene_Expression $First_Row_Sample_Names $output $Boxplots $Sizes </command> 3 <command>R --quiet --slave --file=$GALAXY_ROOT_DIR/tools/EBSeq/GetNormalizedExpression.R --args $Gene_Expression $First_Row_Sample_Names $output $Boxplots $Sizes </command>
4 <inputs> 4 <inputs>
5 <param name="Gene_Expression" type="data" format="tabular" label="Gene Expression (tab eliminated)"/> 5 <param name="Gene_Expression" type="data" format="tabular" label="Gene Expression (tab delimited)"/>
6 <param name="First_Row_Sample_Names" type="select" format="text"> 6 <param name="First_Row_Sample_Names" type="select" format="text">
7 <label>The First Row is Sample Names?</label> 7 <label>The First Row is Sample Names?</label>
8 <option value="y">Yes</option> 8 <option value="y">Yes</option>
9 <option value="n">No</option> 9 <option value="n">No</option>
10 </param> 10 </param>