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comparison EBGeneTwoCondTest.xml @ 17:64bd08a2577c draft

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author ning
date Fri, 15 Mar 2013 18:56:26 -0400
parents 9adf2362f302
children b6465cb90cc0
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16:7218b8ff560e 17:64bd08a2577c
23 23
24 <help> 24 <help>
25 The input Conditions should have exactly two levels. The length of the Condition vector should be exactly the same as the number of 25 The input Conditions should have exactly two levels. The length of the Condition vector should be exactly the same as the number of
26 columns in the data file (except the gene names column). 26 columns in the data file (except the gene names column).
27 27
28 Four output files will be generated. Each file contains Posterior probability of being 28 Four output files will be generated. Each of the first 3 files contains Posterior probability of being
29 DE (PPDE), Fold Change (RealFC), Posterior Fold Change (PostFC) and normalized gene expressions. 29 DE (PPDE), Fold Change (RealFC), Posterior Fold Change (PostFC) and normalized gene expressions.
30 The Four files are: 30 The Four files are:
31 Genes with the same order as in input file; 31 Genes with the same order as in input file;
32 Genes sorted by PPDE; DE Genes under target FDR (PPDE>=TargetFDR) 32 Genes sorted by PPDE; DE Genes under target FDR (PPDE>=TargetFDR)
33 and sorted by PPDE. 33 and sorted by PPDE;
34 Library size factor for each sample. 34 Library size factor for each sample.
35 35
36 </help> 36 </help>
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38 38