Mercurial > repos > ning > ebseq
comparison GetIg.R @ 3:f2a1b4f9ccd5 draft
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author | ning |
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date | Fri, 15 Mar 2013 18:20:25 -0400 |
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2:186aff8bcca3 | 3:f2a1b4f9ccd5 |
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1 sink(file="/tmp/none") | |
2 sink("/dev/null") | |
3 options(warn=-1) | |
4 options(echo=F) | |
5 | |
6 invisible("EBSeq") | |
7 suppressMessages(library("EBSeq")) | |
8 | |
9 args <- commandArgs(trailingOnly = T) | |
10 inputfile <- args[1] | |
11 outputfile <- args[2] | |
12 | |
13 print(args) | |
14 | |
15 a1=read.csv(inputfile,stringsAsFactors=F,header=F, sep="\t") | |
16 Ng=GetNg(a1[[1]],a1[[2]]) | |
17 Ig=Ng$IsoformNgTrun | |
18 | |
19 | |
20 | |
21 | |
22 write.table(Ig,file=outputfile,quote=F,col.names=F,row.names=F,sep = "\t") | |
23 |