--- a/EBIsoformTwoCondTest.xml	Fri Mar 15 18:23:57 2013 -0400
+++ b/EBIsoformTwoCondTest.xml	Fri Mar 15 18:56:03 2013 -0400
@@ -27,12 +27,12 @@
 
 The Ig Vector could be generated by the GetIg function or obtained from RSEM output.
 
-Four output files will be generated. Each file contains Posterior probability of being DE (PPDE), Fold Change (RealFC), Posterior Fold Change (PostFC) and normalized isoform expressions.
+Four output files will be generated. Each of the first 3 files contains Posterior probability of being DE (PPDE), Fold Change (RealFC), Posterior Fold Change (PostFC) and normalized isoform expressions.
 The four files are:
 
 Isoforms with the same order as in input file;
 Isoforms sorted by PPDE; DE Isoforms under target FDR (PPDE>=TargetFDR) 
-and sorted by PPDE.
+and sorted by PPDE; 
 Library size factor for each sample.
 
 </help>