# HG changeset patch
# User ning
# Date 1363386060 14400
# Node ID 9cf7a632a73efd3696b42333dd3161631572fc8a
# Parent  d5394f539b072c20cc647e37ce07868b3b37ce18
Uploaded

diff -r d5394f539b07 -r 9cf7a632a73e GetAllPatterns.R
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GetAllPatterns.R	Fri Mar 15 18:21:00 2013 -0400
@@ -0,0 +1,23 @@
+sink(file="/tmp/none")
+sink("/dev/null")
+options(warn=-1)
+options(echo=F) 
+
+invisible("EBSeq")
+suppressMessages(library("EBSeq"))
+
+args <- commandArgs()
+inputfile <- args[6]
+outputfile <- args[7]
+#PairwisePlots <-args[6]
+
+print(args)
+
+Conds=strsplit(inputfile,split=",")[[1]]
+
+
+Out=GetPatterns(Conds)
+
+
+write.table(Out,file=outputfile,quote=F,col.names=T,row.names=T,sep = "\t")
+