# HG changeset patch
# User ning
# Date 1363752486 14400
# Node ID b2462f5719618dfe24ae410a1499065de3d4cec5
# Parent  72d5e182774f71025023bfc703bd0095b5a7c7d1
Uploaded

diff -r 72d5e182774f -r b2462f571961 EBIsoformTwoCondTest.xml
--- a/EBIsoformTwoCondTest.xml	Wed Mar 20 00:07:55 2013 -0400
+++ b/EBIsoformTwoCondTest.xml	Wed Mar 20 00:08:06 2013 -0400
@@ -2,14 +2,14 @@
   <description>Runs EBSeq to find DE isoforms across two conditions</description>
   <command>R --quiet --slave --file=$GALAXY_ROOT_DIR/tools/EBSeq/EBIsoformTwoCondTest.R --args $Isoform_Expression $First_Row_Sample_Names $Conditions $Ig_Vector $Target_FDR $Output $Sorted_Output $Sorted_Outpu_with_target_FDR $Sizes</command>
   <inputs>
-		<param name="Isoform_Expression" type="data" format="tabular" label="Isoform Expression (tab eliminated, please use the unnormalized values)"/>
+		<param name="Isoform_Expression" type="data" format="tabular" label="Isoform Expression (tab delimited, please use the unnormalized values, e.g. expected counts form RSEM)"/>
 		<param name="First_Row_Sample_Names" type="select" format="text">
 			<label>The First Row is Sample Names?</label>
 			<option value="y">Yes</option>
 			<option value="n">No</option>
 			</param>
 		<param name="Conditions" type="text" size="60" value="C1,C2" label="Enter which condition each
-			sample belongs to (seperated by comma, no space please)." 
+			sample belongs to (separated by comma, no space please)." 
 			help=""/>
 		<param name="Ig_Vector" type="data" format="tabular" label="Ig Vector to define the uncertainty groups"/>
 		<param name="Target_FDR" type="text" format="tabular" value="0.05" label="Target FDR"