comparison test-data/Assembly_statistics_-_SRR1002850_SMALL.fasta.tabular @ 0:ad2b274663f8 draft

planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
author nml
date Tue, 07 Nov 2017 12:28:31 -0500
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comparison
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-1:000000000000 0:ad2b274663f8
1 Statistics for contig lengths:
2 Min contig length: 56
3 Max contig length: 726,282
4 Mean contig length: 12811.87
5 Standard deviation of contig length: 61076.24
6 Median contig length: 331
7 N50 contig length: 203,546
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9 Statistics for numbers of contigs:
10 Number of contigs: 383
11 Number of contigs >=1kb: 109
12 Number of contigs in N50: 6
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14 Statistics for bases in the contigs:
15 Number of bases in all contigs: 4,906,947
16 Number of bases in contigs >=1kb: 4,843,765
17 GC Content of contigs: 52.18 %
18
19 Simple Dinucleotide repeats:
20 Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs)
21 AT: 0.00 % (0 contigs)
22 CG: 0.00 % (0 contigs)
23 AC: 0.00 % (0 contigs)
24 TG: 0.00 % (0 contigs)
25 AG: 0.00 % (0 contigs)
26 TC: 0.00 % (0 contigs)
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28 Simple mononucleotide repeats:
29 Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs)
30 AA: 0.00 % (0 contigs)
31 TT: 0.00 % (0 contigs)
32 CC: 0.00 % (0 contigs)
33 GG: 0.00 % (0 contigs)
34