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comparison biohansel.xml @ 4:23fbe781ce41 draft

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planemo upload for repository https://github.com/phac-nml/biohansel commit 369308400b3da271319e5ca89245bde68ece87de
author nml
date Wed, 28 Nov 2018 09:20:07 -0500
parents c1d05dd90ef2
children c0b8de7aa02e
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3:c1d05dd90ef2 4:23fbe781ce41
1 <tool id="biohansel" name="biohansel" version="2.1.2"> 1 <tool id="biohansel" name="biohansel" version="2.1.3">
2 <description>SNP subtyping of genome sequence reads or assemblies</description> 2 <description>SNP subtyping of genome sequence reads or assemblies</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.1.0">bio_hansel</requirement> 4 <requirement type="package" version="2.1.0">bio_hansel</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"> 6 <command detect_errors="exit_code">
116 '$type_of_scheme.scheme_input.name' 116 '$type_of_scheme.scheme_input.name'
117 #else: 117 #else:
118 $type_of_scheme.scheme_type 118 $type_of_scheme.scheme_type
119 #end if 119 #end if
120 #if $subtype_metadata_filename 120 #if $subtype_metadata_filename
121 --scheme-metadata $subtype_metadata_filename 121 --scheme-metadata '$subtype_metadata_filename'
122 #end if 122 #end if
123 #if $kmer_vals.kmer_min 123 #if $kmer_vals.kmer_min
124 --min-kmer-freq $kmer_vals.kmer_min 124 --min-kmer-freq $kmer_vals.kmer_min
125 #end if 125 #end if
126 #if $kmer_vals.kmer_max 126 #if $kmer_vals.kmer_max