# HG changeset patch
# User nml
# Date 1557754928 14400
# Node ID 3360158bb0c56b90e408ce6d6ad2d882b79e252a
# Parent  ba6a0af656a647f5075db986de30468b0df9929e
planemo upload for repository https://github.com/phac-nml/biohansel commit e3553c3c89db60cd285a401bc1c06fdd32665dd2

diff -r ba6a0af656a6 -r 3360158bb0c5 biohansel.xml
--- a/biohansel.xml	Wed Mar 20 13:44:02 2019 -0400
+++ b/biohansel.xml	Mon May 13 09:42:08 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="biohansel" name="biohansel" version="2.1.5">
+<tool id="biohansel" name="biohansel" version="2.1.6">
   <description>SNP subtyping of genome sequence reads or assemblies</description>
   <requirements>
     <requirement type="package" version="2.1.1">bio_hansel</requirement>
@@ -72,7 +72,7 @@
 #end if
 
 ## Checking for custom scheme.
-#if $type_of_scheme.scheme_type == "custom":
+#if $type_of_scheme.scheme_check == "custom":
   #if $type_of_scheme.scheme_input.is_of_type('fasta'):
     ln -s '$type_of_scheme.scheme_input' '$type_of_scheme.scheme_input.name' &&
   #end if
@@ -112,7 +112,7 @@
   $dev_args.use_json
   $input_files
   --scheme
-#if $type_of_scheme.scheme_type == "custom":
+#if $type_of_scheme.scheme_check == "custom":
   '$type_of_scheme.scheme_input.name'
 #else:
   $type_of_scheme.scheme_type
@@ -189,19 +189,23 @@
       </when>
     </conditional>
     <conditional name="type_of_scheme">
-      <param name="scheme_type" type="select"
-        label="SNP Subtyping Scheme"
-        help="Select the SNP subtyping scheme you wish to subtype with">
-        <option value="heidelberg">Salmonella Heidelberg subtyping scheme</option>
-        <option value="enteritidis">Salmonella Enteritidis subtyping scheme</option>
-        <option value="custom">Specify your own custom scheme</option>
+      <param name="scheme_check" type="select"
+        label="Subtyping Schemes"
+        help="Use included scheme or custom">
+        <option value="standard">Included Biohansel Schemes</option>
+        <option value="custom">Select User Custom Scheme</option>
       </param>
-      <when value="heidelberg"/>
-      <when value="enteritidis"/>
+      <when value="standard">
+        <param name="scheme_type" type="select"
+          label="Included SNP Subtyping Scheme">
+          <option value="heidelberg">Salmonella Heidelberg subtyping scheme</option>
+          <option value="enteritidis">Salmonella Enteritidis subtyping scheme</option>
+        </param>
+      </when>
       <when value="custom">
         <param name="scheme_input" 
           type="data" format="fasta" 
-          label="Your biohansel SNP Subtyping Scheme"/>
+          label="Your Custom Biohansel SNP Subtyping Scheme"/>
       </when>
     </conditional>
     <param name="subtype_metadata"