Mercurial > repos > nml > bundle_collections

annotate bundle_collection.xml @ 0:bae199dc511f draft

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planemo upload commit 75c510cf71217015f3f83baf61a4a54a3a1f4bfd
author nml
date Fri, 20 Nov 2015 10:23:17 -0500
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bae199dc511f planemo upload commit 75c510cf71217015f3f83baf61a4a54a3a1f4bfd
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1 <tool id="bundle_collection" name="Bundle Collection" version="1.0.1">
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2 <description>Download a collection of files</description>
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3 <command interpreter="perl">bundle_collection.pl -h $html_file -p $html_file.files_path
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4 #for $f in $input.keys
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5 -i "$f,$input[$f].ext=$input[$f]"
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6 #if $input[$f].metadata.bam_index and $input[$f].metadata.bam_index != "None"
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7 #set $bamind = $f+","+$input[$f].ext+".bai="+$input[$f].metadata.bam_index
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8 -i "$bamind"
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9 #end if
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10 #end for
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11 </command>
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12
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13 <inputs>
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14 <param name="input" type="data_collection" label="Data Collection" collection_type="list"/>
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15 </inputs>
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16
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17 <outputs>
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18 <data name="html_file" format="html" label="Bundled Collection" />
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19 </outputs>
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20 <help>
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21 ***What it does**
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22
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23 This tool will bundle up files in a list collection into a downloadable zip file
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24
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25 Author: Mariam Iskander and Jen Cabral
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26 </help>
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27
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28 </tool>