Mercurial > repos > nml > bundle_collections
comparison bundle_collection.xml @ 0:bae199dc511f draft
planemo upload commit 75c510cf71217015f3f83baf61a4a54a3a1f4bfd
| author | nml |
|---|---|
| date | Fri, 20 Nov 2015 10:23:17 -0500 |
| parents | |
| children | cd6da887a5f4 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:bae199dc511f |
|---|---|
| 1 <tool id="bundle_collection" name="Bundle Collection" version="1.0.1"> | |
| 2 <description>Download a collection of files</description> | |
| 3 <command interpreter="perl">bundle_collection.pl -h $html_file -p $html_file.files_path | |
| 4 #for $f in $input.keys | |
| 5 -i "$f,$input[$f].ext=$input[$f]" | |
| 6 #if $input[$f].metadata.bam_index and $input[$f].metadata.bam_index != "None" | |
| 7 #set $bamind = $f+","+$input[$f].ext+".bai="+$input[$f].metadata.bam_index | |
| 8 -i "$bamind" | |
| 9 #end if | |
| 10 #end for | |
| 11 </command> | |
| 12 | |
| 13 <inputs> | |
| 14 <param name="input" type="data_collection" label="Data Collection" collection_type="list"/> | |
| 15 </inputs> | |
| 16 | |
| 17 <outputs> | |
| 18 <data name="html_file" format="html" label="Bundled Collection" /> | |
| 19 </outputs> | |
| 20 <help> | |
| 21 ***What it does** | |
| 22 | |
| 23 This tool will bundle up files in a list collection into a downloadable zip file | |
| 24 | |
| 25 Author: Mariam Iskander and Jen Cabral | |
| 26 </help> | |
| 27 | |
| 28 </tool> |