Mercurial > repos > nml > collapse_collections

annotate merge.xml @ 2:4263967e8d40 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit ee055b53af5f4a3420b35f3641d45c0559be37fc
author nml
date Tue, 17 May 2016 15:56:30 -0400
parents a78a70d4806c
children c0c988378838
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
4263967e8d40 planemo upload commit ee055b53af5f4a3420b35f3641d45c0559be37fc
nml
parents: 1
diff changeset
1 <tool id="collapse_dataset" name="Collapse Collection" version="2.1">
0
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
2 <description>Collapse collection into single dataset in order of the collection</description>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
3 <command>
1
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
4 <![CDATA[
2
4263967e8d40 planemo upload commit ee055b53af5f4a3420b35f3641d45c0559be37fc
nml
parents: 1
diff changeset
5
1
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
6 (
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
7 #for $f in $input_list#
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
8 #if $filename.add_name:
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
9 #if str($filename.place_name) == "same":
2
4263967e8d40 planemo upload commit ee055b53af5f4a3420b35f3641d45c0559be37fc
nml
parents: 1
diff changeset
10 printf "$f.element_identifier\t" ;
1
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
11 #else
2
4263967e8d40 planemo upload commit ee055b53af5f4a3420b35f3641d45c0559be37fc
nml
parents: 1
diff changeset
12 printf "$f.element_identifier\n" ;
1
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
13 #end if
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
14 #end if
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
15 cat "$f" ;
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
16 #end for#
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
17 )
0
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
18 > $output
1
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
19
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
20 ]]>
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
21
0
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
22 </command>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
23 <inputs>
2
4263967e8d40 planemo upload commit ee055b53af5f4a3420b35f3641d45c0559be37fc
nml
parents: 1
diff changeset
24 <param name="input_list" type="data" label="Collection of files to collapse into single dataset" help="" optional="false" multiple="true" />
1
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
25 <conditional name="filename">
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
26 <param name="add_name" type="boolean" display="checkboxes" label="Append File name"/>
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
27 <when value="true">
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
28 <param name="place_name" type="select" label="Where to add dataset name">
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
29 <option value="same">Same line</option>
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
30 <option value="above">Line Above</option>
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
31 </param>
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
32 </when>
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
33 <when value='false'>
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
34 </when>
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
35 </conditional>
0
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
36 </inputs>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
37 <outputs>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
38 <data name="output" format_source="input_list" ></data>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
39 </outputs>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
40 <tests>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
41 <test>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
42 <param name="input_list">
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
43 <collection type="list">
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
44 <element name="input1" value="input1" />
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
45 <element name="input2" value="input2" />
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
46 </collection>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
47 </param>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
48 <output name="output" file="answer.txt"/>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
49 </test>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
50 </tests>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
51 <help>
1
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
52 Combines a list collection into a single file dataset with option to include dataset names.
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
53
a78a70d4806c planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
nml
parents: 0
diff changeset
54
0
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
55 </help>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
56 <citations>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
57 </citations>
49bd84e136c7 planemo upload commit f3c3ccefd8615c32713e0b0e8d231ce5151b2714-dirty
nml
parents:
diff changeset
58 </tool>