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annotate merge.xml @ 1:a78a70d4806c draft

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planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
author nml
date Tue, 17 May 2016 12:54:54 -0400
parents 49bd84e136c7
children 4263967e8d40
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1 <tool id="collapse_dataset" name="Collapse Collection" version="2.0">
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2 <description>Collapse collection into single dataset in order of the collection</description>
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3 <command>
1
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4 <![CDATA[
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5
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6 (
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7 #for $f in $input_list#
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8 #if $filename.add_name:
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9 #if str($filename.place_name) == "same":
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10 printf "$f.name\t" ;
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11 #else
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12 printf "$f.name\n" ;
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13 #end if
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14 #end if
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15 cat "$f" ;
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16 #end for#
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17 )
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18 > $output
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19
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20 ]]>
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21
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22 </command>
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23 <inputs>
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24 <param name="input_list" type="data_collection" label="Collection of files to collapse into single dataset" help="" optional="false" collection_type="list" />
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25 <conditional name="filename">
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26 <param name="add_name" type="boolean" display="checkboxes" label="Append File name"/>
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27 <when value="true">
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28 <param name="place_name" type="select" label="Where to add dataset name">
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29 <option value="same">Same line</option>
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30 <option value="above">Line Above</option>
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31 </param>
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32 </when>
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33 <when value='false'>
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34 </when>
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35 </conditional>
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36 </inputs>
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37 <outputs>
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38 <data name="output" format_source="input_list" ></data>
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39 </outputs>
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40 <tests>
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41 <test>
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42 <param name="input_list">
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43 <collection type="list">
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44 <element name="input1" value="input1" />
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45 <element name="input2" value="input2" />
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46 </collection>
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47 </param>
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48 <output name="output" file="answer.txt"/>
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49 </test>
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50 </tests>
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51 <help>
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52 Combines a list collection into a single file dataset with option to include dataset names.
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53
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54
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55 </help>
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56 <citations>
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57 </citations>
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58 </tool>