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comparison merge.xml @ 1:a78a70d4806c draft

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planemo upload commit b8a959738e856ac80cb2d58423f455337cdd4853
author nml
date Tue, 17 May 2016 12:54:54 -0400
parents 49bd84e136c7
children 4263967e8d40
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0:49bd84e136c7 1:a78a70d4806c
1 <tool id="collapse_dataset" name="Collapse Collection" version="1.0"> 1 <tool id="collapse_dataset" name="Collapse Collection" version="2.0">
2 <description>Collapse collection into single dataset in order of the collection</description> 2 <description>Collapse collection into single dataset in order of the collection</description>
3 <command> 3 <command>
4 cat 4 <![CDATA[
5 #for $f in $input_list# $f #end for# 5
6 (
7 #for $f in $input_list#
8 #if $filename.add_name:
9 #if str($filename.place_name) == "same":
10 printf "$f.name\t" ;
11 #else
12 printf "$f.name\n" ;
13 #end if
14 #end if
15 cat "$f" ;
16 #end for#
17 )
6 > $output 18 > $output
19
20 ]]>
21
7 </command> 22 </command>
8 <inputs> 23 <inputs>
9 <param name="input_list" type="data_collection" label="Collection of files to collapse into single dataset" help="" optional="false" collection_type="list" /> 24 <param name="input_list" type="data_collection" label="Collection of files to collapse into single dataset" help="" optional="false" collection_type="list" />
25 <conditional name="filename">
26 <param name="add_name" type="boolean" display="checkboxes" label="Append File name"/>
27 <when value="true">
28 <param name="place_name" type="select" label="Where to add dataset name">
29 <option value="same">Same line</option>
30 <option value="above">Line Above</option>
31 </param>
32 </when>
33 <when value='false'>
34 </when>
35 </conditional>
10 </inputs> 36 </inputs>
11 <outputs> 37 <outputs>
12 <data name="output" format_source="input_list" ></data> 38 <data name="output" format_source="input_list" ></data>
13 </outputs> 39 </outputs>
14 <tests> 40 <tests>
21 </param> 47 </param>
22 <output name="output" file="answer.txt"/> 48 <output name="output" file="answer.txt"/>
23 </test> 49 </test>
24 </tests> 50 </tests>
25 <help> 51 <help>
26 Single tool that combines a list collection into a single file 52 Combines a list collection into a single file dataset with option to include dataset names.
53
54
27 </help> 55 </help>
28 <citations> 56 <citations>
29 </citations> 57 </citations>
30 </tool> 58 </tool>