Mercurial > repos > nml > combine_assemblystats

annotate test-data/first.txt @ 0:1855203c2e6c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
author nml
date Wed, 08 Nov 2017 16:38:50 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
1 Statistics for contig lengths:
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
2 Min contig length: 1,134
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
3 Max contig length: 101,601
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
4 Mean contig length: 24480.24
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
5 Standard deviation of contig length: 23362.52
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
6 Median contig length: 16,139
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
7 N50 contig length: 45,147
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
8
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
9 Statistics for numbers of contigs:
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
10 Number of contigs: 186
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
11 Number of contigs >=1kb: 186
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
12 Number of contigs in N50: 35
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
13
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
14 Statistics for bases in the contigs:
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
15 Number of bases in all contigs: 4,553,325
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
16 Number of bases in contigs >=1kb: 4,553,325
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
17 GC Content of contigs: 47.56 %
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
18
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
19 Simple Dinucleotide repeats:
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
20 Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
21 AT: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
22 CG: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
23 AC: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
24 TG: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
25 AG: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
26 TC: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
27
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
28 Simple mononucleotide repeats:
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
29 Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
30 AA: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
31 TT: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
32 CC: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
33 GG: 0.00 % (0 contigs)
1855203c2e6c planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
nml
parents:
diff changeset
34