Mercurial > repos > nml > concat_paired
comparison concat_fastqs.xml @ 0:31c4f7540ddc draft default tip
"planemo upload for repository https://github.com/phac-nml/concat commit 5129b413d1ed81e9e719e11c1728f2814e35c14c"
| author | nml |
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| date | Mon, 16 Dec 2019 16:22:59 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:31c4f7540ddc |
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| 1 <tool id="concat_fastqs" name="Concat R1 and R2 fastq" version="0.2"> | |
| 2 <description>Combine forward and reverse fastqs files </description> | |
| 3 <command> | |
| 4 cat '$texts.forward' '$texts.reverse' > '$output' | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="texts" type="data_collection" label="Paired Collection of Fastq reads" help="" optional="false" collection_type="paired" /> | |
| 8 </inputs> | |
| 9 <outputs> | |
| 10 <data name="output" format="fastqsanger" label="$texts.name"></data> | |
| 11 | |
| 12 </outputs> | |
| 13 <tests> | |
| 14 <test> | |
| 15 <param name="texts"> | |
| 16 <collection type="paired"> | |
| 17 <element name="forward" value="forward.fastq" /> | |
| 18 <element name="reverse" value="reverse.fastq" /> | |
| 19 </collection> | |
| 20 </param> | |
| 21 <output name="output" file="output.fastq" /> | |
| 22 | |
| 23 </test> | |
| 24 | |
| 25 </tests> | |
| 26 <help> | |
| 27 <![CDATA[Concat is used to concatenate two files]]> | |
| 28 </help> | |
| 29 </tool> |