Mercurial > repos > nml > filter_stats
comparison test-data/filter-stats-out.tabular @ 0:89c3ba37711c draft
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
| author | nml |
|---|---|
| date | Tue, 27 Aug 2019 12:31:08 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:89c3ba37711c |
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| 1 Chromosome Genomes | |
| 2 chr ALL B query | |
| 3 Total number of N's and -'s 1 1 0 | |
| 4 Total percent of N's and -'s 50.00 50.00 0.00 | |
| 5 Total number of unfiltered variants in chromosome: 2 | |
| 6 | |
| 7 ================= Filter Summary Statistics ===================== | |
| 8 Number of sites used to generate phylogeny: 1 | |
| 9 Total number of sites identified: 2 | |
| 10 Number of sites filtered: 1 | |
| 11 Percentage of sites filtered: 50.00 | |
| 12 Coverage filtered: 1 | |
| 13 mpileup filtered: 0 | |
| 14 Invalid filtered: Invalid positions not analyzed. Please use -a flag to analyze. | |
| 15 |