Mercurial > repos > nml > find_repeats

comparison find-repeats.xml @ 1:7e6be57de1a0 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
author nml
date Tue, 23 Jun 2020 10:26:42 -0400
parents 7f27672ff880
children
comparison
equal deleted inserted replaced
0:7f27672ff880 1:7e6be57de1a0
1 <tool id="findrepeat" name="Find Repeats" version ="1.8.2"> 1 <tool id="findrepeat" name="Find Repeats" version ="@VERSION@+galaxy1">
2 <description>Identify repeat elements using Mummer</description> 2 <description>Identify repeat elements using Mummer</description>
3 <requirements> 3 <macros>
4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> 4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements">
5 <requirement type="package" version="3.23">mummer</requirement> 7 <requirement type="package" version="3.23">mummer</requirement>
6 </requirements> 8 </expand>
7 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
8 find-repeats.pl -l $length -p $pid $fasta > $out 10 find-repeats.pl -l $length -p $pid $fasta > $out
9 </command> 11 </command>
10 <inputs> 12 <inputs>
11 <param name="fasta" type="data" label="Fasta file" format="fasta"/> 13 <param name="fasta" type="data" label="Fasta file" format="fasta"/>
39 41
40 **Options** 42 **Options**
41 - Minimum length of repeat region (150). 43 - Minimum length of repeat region (150).
42 - Minimum PID of repeat region (90). 44 - Minimum PID of repeat region (90).
43 </help> 45 </help>
44 <citations> 46 <expand macro="citations">
45 </citations> 47 <citation type="doi">10.1186/gb-2004-5-2-r12</citation>
48 </expand>
46 </tool> 49 </tool>