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comparison gnali.xml @ 7:2b1154ae7e21 draft default tip

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"planemo upload for repository https://github.com/phac-nml/gnali/ commit c3a811e4bb8ba8a718047c3324809175ad23291b"
author nml
date Thu, 29 Jul 2021 19:17:40 +0000
parents d1085589a5a7
children
comparison
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6:d1085589a5a7 7:2b1154ae7e21
64 <filter>vcf_output</filter> 64 <filter>vcf_output</filter>
65 </data> 65 </data>
66 </outputs> 66 </outputs>
67 <tests> 67 <tests>
68 <test> 68 <test>
69 <param name="test_genes" value="test_genes.txt"/> 69 <param name="test_genes" value="gnomadv2_input.txt"/>
70 <param name="predefined_filters" value="homozygous-controls"/> 70 <param name="predefined_filters" value="homozygous-controls"/>
71 <param name="pop_freqs" value="--pop_freqs"/> 71 <param name="pop_freqs" value="--pop_freqs"/>
72 <param name="vcf_output" value="--vcf"/> 72 <param name="vcf_output" value="--vcf"/>
73 <output name="basic_output" 73 <output name="basic_output"
74 value="results/Nonessential_Host_Genes_Basic.txt" 74 value="gnomadv2_results/Nonessential_Host_Genes_Basic.txt"
75 ftype="txt" 75 ftype="txt"
76 compare="diff"> 76 compare="diff">
77 </output> 77 </output>
78 <output name="detailed_output" 78 <output name="detailed_output"
79 value="results/Nonessential_Host_Genes_Detailed.txt" 79 value="gnomadv2_results/Nonessential_Host_Genes_Detailed.txt"
80 ftype="txt" 80 ftype="txt"
81 compare="diff"> 81 compare="diff">
82 </output> 82 </output>
83 <output name="variants_vcf_output" 83 <output name="variants_vcf_output"
84 value="results/Nonessential_Gene_Variants.vcf" 84 value="gnomadv2_results/Nonessential_Gene_Variants.vcf"
85 ftype="vcf"
86 compare="diff">
87 </output>
88 </test>
89 <test>
90 <param name="test_genes" value="gnomadv3_input.txt"/>
91 <conditional name="database_info">
92 <param name="database" value="gnomadv3.1.1"/>
93 </conditional>
94 <param name="predefined_filters" value="homozygous"/>
95 <param name="pop_freqs" value="--pop_freqs"/>
96 <param name="vcf_output" value="--vcf"/>
97 <output name="basic_output"
98 value="gnomadv3_results/Nonessential_Host_Genes_Basic.txt"
99 ftype="txt"
100 compare="diff">
101 </output>
102 <output name="detailed_output"
103 value="gnomadv3_results/Nonessential_Host_Genes_Detailed.txt"
104 ftype="txt"
105 compare="diff">
106 </output>
107 <output name="variants_vcf_output"
108 value="gnomadv3_results/Nonessential_Gene_Variants.vcf"
85 ftype="vcf" 109 ftype="vcf"
86 compare="diff"> 110 compare="diff">
87 </output> 111 </output>
88 </test> 112 </test>
89 </tests> 113 </tests>