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diff test-data/gnomadv2_results/Nonessential_Host_Genes_Detailed.txt @ 7:2b1154ae7e21 draft default tip

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"planemo upload for repository https://github.com/phac-nml/gnali/ commit c3a811e4bb8ba8a718047c3324809175ad23291b"
author nml
date Thu, 29 Jul 2021 19:17:40 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gnomadv2_results/Nonessential_Host_Genes_Detailed.txt	Thu Jul 29 19:17:40 2021 +0000
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+Chromosome	Position_Start	RSID	Reference_Allele	Alternate_Allele	Score	Quality	LoF_Variant	LoF_Annotation	HGNC_Symbol	Ensembl Code	HGVSc	african-AC	african-AN	african-AF	ashkenazi-jewish-AC	ashkenazi-jewish-AN	ashkenazi-jewish-AF	european-non-finnish-AC	european-non-finnish-AN	european-non-finnish-AF	finnish-AC	finnish-AN	finnish-AF	south-asian-AC	south-asian-AN	south-asian-AF	latino-AC	latino-AN	latino-AF	east-asian-AC	east-asian-AN	east-asian-AF	other-AC	other-AF	other-AN	male-AC	male-AF	male-AN	female-AC	female-AN	female-AF
+3	46414935	rs938517991	AT	A	9974.16	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000292303.4:c.546delT	0	16192	0.0000000000e+00	0	10066	0.0000000000e+00	2	113380	1.7639800000e-05	0	21600	0.0000000000e+00	0	30616	0.0000000000e+00	0	34578	0.0000000000e+00	0	18394	0.0000000000e+00	0	0.0000000000e+00	6120	0	0.0000000000e+00	135678	2	115268	1.7350900000e-05
+3	46414935	rs938517991	AT	A	9974.16	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000343801.4:c.546delT	0	16192	0.0000000000e+00	0	10066	0.0000000000e+00	2	113380	1.7639800000e-05	0	21600	0.0000000000e+00	0	30616	0.0000000000e+00	0	34578	0.0000000000e+00	0	18394	0.0000000000e+00	0	0.0000000000e+00	6120	0	0.0000000000e+00	135678	2	115268	1.7350900000e-05
+3	46414935	rs938517991	AT	A	9974.16	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000445772.1:c.546delT	0	16192	0.0000000000e+00	0	10066	0.0000000000e+00	2	113380	1.7639800000e-05	0	21600	0.0000000000e+00	0	30616	0.0000000000e+00	0	34578	0.0000000000e+00	0	18394	0.0000000000e+00	0	0.0000000000e+00	6120	0	0.0000000000e+00	135678	2	115268	1.7350900000e-05
+3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	74264261.52	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA	311	16196	1.9202300000e-02	1296	10068	1.2872500000e-01	12203	113462	1.0755100000e-01	2881	21580	1.3350300000e-01	489	30610	1.5975200000e-02	1014	34580	2.9323300000e-02	2	18392	1.0874300000e-04	444	7.2572700000e-02	6118	10108	7.4499900000e-02	135678	8532	115328	7.3980300000e-02
+3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	74264261.52	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA	311	16196	1.9202300000e-02	1296	10068	1.2872500000e-01	12203	113462	1.0755100000e-01	2881	21580	1.3350300000e-01	489	30610	1.5975200000e-02	1014	34580	2.9323300000e-02	2	18392	1.0874300000e-04	444	7.2572700000e-02	6118	10108	7.4499900000e-02	135678	8532	115328	7.3980300000e-02
+3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	74264261.52	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA	311	16196	1.9202300000e-02	1296	10068	1.2872500000e-01	12203	113462	1.0755100000e-01	2881	21580	1.3350300000e-01	489	30610	1.5975200000e-02	1014	34580	2.9323300000e-02	2	18392	1.0874300000e-04	444	7.2572700000e-02	6118	10108	7.4499900000e-02	135678	8532	115328	7.3980300000e-02
+3	46415066	rs146972949	C	T	120238.89	PASS	T	stop_gained	CCR5	ENSG00000160791	ENST00000292303.4:c.673C>T	23	16252	1.4152100000e-03	0	10016	0.0000000000e+00	8	113418	7.0535500000e-05	0	21590	0.0000000000e+00	0	30566	0.0000000000e+00	3	34516	8.6916200000e-05	0	18382	0.0000000000e+00	0	0.0000000000e+00	6108	14	1.0326900000e-04	135568	20	115280	1.7349100000e-04
+3	46415066	rs146972949	C	T	120238.89	PASS	T	stop_gained	CCR5	ENSG00000160791	ENST00000343801.4:c.673C>T	23	16252	1.4152100000e-03	0	10016	0.0000000000e+00	8	113418	7.0535500000e-05	0	21590	0.0000000000e+00	0	30566	0.0000000000e+00	3	34516	8.6916200000e-05	0	18382	0.0000000000e+00	0	0.0000000000e+00	6108	14	1.0326900000e-04	135568	20	115280	1.7349100000e-04
+3	46415066	rs146972949	C	T	120238.89	PASS	T	stop_gained	CCR5	ENSG00000160791	ENST00000445772.1:c.673C>T	23	16252	1.4152100000e-03	0	10016	0.0000000000e+00	8	113418	7.0535500000e-05	0	21590	0.0000000000e+00	0	30566	0.0000000000e+00	3	34516	8.6916200000e-05	0	18382	0.0000000000e+00	0	0.0000000000e+00	6108	14	1.0326900000e-04	135568	20	115280	1.7349100000e-04
+3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	1947603.90	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA	168	8706	1.9297000000e-02	35	290	1.2069000000e-01	1621	15392	1.0531400000e-01	478	3468	1.3783200000e-01	-	-	-	23	848	2.7122600000e-02	0	1558	0.0000000000e+00	102	9.3922700000e-02	1086	1289	7.3893600000e-02	17444	1138	13904	8.1847000000e-02
+3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	1947603.90	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA	168	8706	1.9297000000e-02	35	290	1.2069000000e-01	1621	15392	1.0531400000e-01	478	3468	1.3783200000e-01	-	-	-	23	848	2.7122600000e-02	0	1558	0.0000000000e+00	102	9.3922700000e-02	1086	1289	7.3893600000e-02	17444	1138	13904	8.1847000000e-02
+3	46414943	rs775750898	TACAGTCAGTATCAATTCTGGAAGAATTTCCAG	T	1947603.90	PASS	-	frameshift_variant	CCR5	ENSG00000160791	ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA	168	8706	1.9297000000e-02	35	290	1.2069000000e-01	1621	15392	1.0531400000e-01	478	3468	1.3783200000e-01	-	-	-	23	848	2.7122600000e-02	0	1558	0.0000000000e+00	102	9.3922700000e-02	1086	1289	7.3893600000e-02	17444	1138	13904	8.1847000000e-02