Mercurial > repos > nml > gnali
changeset 7:2b1154ae7e21 draft default tip
"planemo upload for repository https://github.com/phac-nml/gnali/ commit c3a811e4bb8ba8a718047c3324809175ad23291b"
| author | nml |
|---|---|
| date | Thu, 29 Jul 2021 19:17:40 +0000 |
| parents | d1085589a5a7 |
| children | |
| files | gnali.xml macros.xml test-data/gnomadv2_input.txt test-data/gnomadv2_results/Nonessential_Gene_Variants.vcf test-data/gnomadv2_results/Nonessential_Host_Genes_Basic.txt test-data/gnomadv2_results/Nonessential_Host_Genes_Detailed.txt test-data/gnomadv3_input.txt test-data/gnomadv3_results/Nonessential_Gene_Variants.vcf test-data/gnomadv3_results/Nonessential_Host_Genes_Basic.txt test-data/gnomadv3_results/Nonessential_Host_Genes_Detailed.txt test-data/results/Nonessential_Gene_Variants.vcf test-data/results/Nonessential_Host_Genes_Basic.txt test-data/results/Nonessential_Host_Genes_Detailed.txt test-data/test_genes.txt |
| diffstat | 14 files changed, 1640 insertions(+), 618 deletions(-) [+] |
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--- a/gnali.xml Fri Jun 11 21:08:17 2021 +0000 +++ b/gnali.xml Thu Jul 29 19:17:40 2021 +0000 @@ -66,22 +66,46 @@ </outputs> <tests> <test> - <param name="test_genes" value="test_genes.txt"/> + <param name="test_genes" value="gnomadv2_input.txt"/> <param name="predefined_filters" value="homozygous-controls"/> <param name="pop_freqs" value="--pop_freqs"/> <param name="vcf_output" value="--vcf"/> <output name="basic_output" - value="results/Nonessential_Host_Genes_Basic.txt" + value="gnomadv2_results/Nonessential_Host_Genes_Basic.txt" ftype="txt" compare="diff"> </output> <output name="detailed_output" - value="results/Nonessential_Host_Genes_Detailed.txt" + value="gnomadv2_results/Nonessential_Host_Genes_Detailed.txt" ftype="txt" compare="diff"> </output> <output name="variants_vcf_output" - value="results/Nonessential_Gene_Variants.vcf" + value="gnomadv2_results/Nonessential_Gene_Variants.vcf" + ftype="vcf" + compare="diff"> + </output> + </test> + <test> + <param name="test_genes" value="gnomadv3_input.txt"/> + <conditional name="database_info"> + <param name="database" value="gnomadv3.1.1"/> + </conditional> + <param name="predefined_filters" value="homozygous"/> + <param name="pop_freqs" value="--pop_freqs"/> + <param name="vcf_output" value="--vcf"/> + <output name="basic_output" + value="gnomadv3_results/Nonessential_Host_Genes_Basic.txt" + ftype="txt" + compare="diff"> + </output> + <output name="detailed_output" + value="gnomadv3_results/Nonessential_Host_Genes_Detailed.txt" + ftype="txt" + compare="diff"> + </output> + <output name="variants_vcf_output" + value="gnomadv3_results/Nonessential_Gene_Variants.vcf" ftype="vcf" compare="diff"> </output>
--- a/macros.xml Fri Jun 11 21:08:17 2021 +0000 +++ b/macros.xml Thu Jul 29 19:17:40 2021 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@VERSION@">1.0.5</token> + <token name="@VERSION@">1.1.0</token> <token name="@PROFILE_VERSION@">20.01</token> <xml name="requirements"> <requirements>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gnomadv2_input.txt Thu Jul 29 19:17:40 2021 +0000 @@ -0,0 +1,1 @@ +CCR5
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gnomadv2_results/Nonessential_Gene_Variants.vcf Thu Jul 29 19:17:40 2021 +0000 @@ -0,0 +1,603 @@ +##fileformat=VCFv4.2 +##hailversion=0.2.7-c860755b5da3 +##FILTER=<ID=AC0,Description="Allele count is zero after filtering out low-confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls)"> +##FILTER=<ID=InbreedingCoeff,Description="InbreedingCoeff < -0.3"> +##FILTER=<ID=PASS,Description="Passed all variant filters"> +##FILTER=<ID=RF,Description="Failed random forest filtering thresholds of 0.2634762834546574, 0.22213813189901457 (probabilities of being a true positive variant) for SNPs, indels"> +##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate allele count for samples"> +##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in samples"> +##INFO=<ID=AF,Number=A,Type=Float,Description="Alternate allele frequency in samples"> +##INFO=<ID=rf_tp_probability,Number=1,Type=Float,Description="Random forest prediction probability for a site being a true variant"> +##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value of Fisher's exact test for strand bias"> +##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation"> +##INFO=<ID=MQ,Number=1,Type=Float,Description="Root mean square of the mapping quality of reads across all samples"> +##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference read mapping qualities"> +##INFO=<ID=QD,Number=1,Type=Float,Description="Variant call confidence normalized by depth of sample reads supporting a variant"> +##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference read position bias"> +##INFO=<ID=SOR,Number=1,Type=Float,Description="Strand bias estimated by the symmetric odds ratio test"> +##INFO=<ID=VQSR_POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="Variant was used to build the positive training set of high-quality variants for VQSR"> +##INFO=<ID=VQSR_NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="Variant was used to build the negative training set of low-quality variants for VQSR"> +##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference base qualities"> +##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference number of hard clipped bases"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Depth of informative coverage for each sample; reads with MQ=255 or with bad mates are filtered"> +##INFO=<ID=VQSLOD,Number=1,Type=Float,Description="Log-odds ratio of being a true variant versus being a false positive under the trained VQSR Gaussian mixture model"> +##INFO=<ID=VQSR_culprit,Number=1,Type=String,Description="Worst-performing annotation in the VQSR Gaussian mixture model"> +##INFO=<ID=segdup,Number=0,Type=Flag,Description="Variant falls within a segmental duplication region"> +##INFO=<ID=lcr,Number=0,Type=Flag,Description="Variant falls within a low complexity region"> +##INFO=<ID=decoy,Number=0,Type=Flag,Description="Variant falls within a reference decoy region"> +##INFO=<ID=nonpar,Number=0,Type=Flag,Description="Variant (on sex chromosome) falls outside a pseudoautosomal region"> +##INFO=<ID=rf_positive_label,Number=0,Type=Flag,Description="Variant was labelled as a positive example for training of random forest model"> +##INFO=<ID=rf_negative_label,Number=0,Type=Flag,Description="Variant was labelled as a negative example for training of random forest model"> +##INFO=<ID=rf_label,Number=1,Type=String,Description="Random forest training label"> +##INFO=<ID=rf_train,Number=0,Type=Flag,Description="Variant was used in training random forest model"> +##INFO=<ID=transmitted_singleton,Number=0,Type=Flag,Description="Variant was a callset-wide doubleton that was transmitted within a family (i.e., a singleton amongst unrelated sampes in cohort)"> +##INFO=<ID=variant_type,Number=1,Type=String,Description="Variant type (snv, indel, multi-snv, multi-indel, or mixed)"> +##INFO=<ID=allele_type,Number=A,Type=String,Description="Allele type (snv, ins, del, or mixed)"> +##INFO=<ID=n_alt_alleles,Number=A,Type=Integer,Description="Total number of alternate alleles observed at variant locus"> +##INFO=<ID=was_mixed,Number=0,Type=Flag,Description="Variant type was mixed"> +##INFO=<ID=has_star,Number=0,Type=Flag,Description="Variant locus coincides with a spanning deletion (represented by a star) observed elsewhere in the callset"> +##INFO=<ID=pab_max,Number=A,Type=Float,Description="Maximum p-value over callset for binomial test of observed allele balance for a heterozygous genotype, given expectation of AB=0.5"> +##INFO=<ID=gq_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for GQ in heterozygous individuals; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> +##INFO=<ID=gq_hist_all_bin_freq,Number=A,Type=String,Description="Histogram for GQ; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> +##INFO=<ID=dp_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for DP in heterozygous individuals; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> +##INFO=<ID=dp_hist_alt_n_larger,Number=A,Type=Integer,Description="Count of DP values falling above highest histogram bin edge"> +##INFO=<ID=dp_hist_all_bin_freq,Number=A,Type=String,Description="Histogram for DP; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> +##INFO=<ID=dp_hist_all_n_larger,Number=A,Type=Integer,Description="Count of DP values falling above highest histogram bin edge"> +##INFO=<ID=ab_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for AB in heterozygous individuals; bin edges are: 0.00|0.05|0.10|0.15|0.20|0.25|0.30|0.35|0.40|0.45|0.50|0.55|0.60|0.65|0.70|0.75|0.80|0.85|0.90|0.95|1.00"> +##INFO=<ID=AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry"> +##INFO=<ID=AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry"> +##INFO=<ID=AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry"> +##INFO=<ID=nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry"> +##INFO=<ID=controls_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=non_topmed_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes"> +##INFO=<ID=AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes"> +##INFO=<ID=AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes"> +##INFO=<ID=nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes"> +##INFO=<ID=AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry"> +##INFO=<ID=AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry"> +##INFO=<ID=AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry"> +##INFO=<ID=nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry"> +##INFO=<ID=non_neuro_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry"> +##INFO=<ID=AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry"> +##INFO=<ID=AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry"> +##INFO=<ID=nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry"> +##INFO=<ID=AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry"> +##INFO=<ID=AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry"> +##INFO=<ID=AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry"> +##INFO=<ID=nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry"> +##INFO=<ID=non_neuro_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry"> +##INFO=<ID=AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry"> +##INFO=<ID=AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry"> +##INFO=<ID=nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry"> +##INFO=<ID=AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry"> +##INFO=<ID=AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry"> +##INFO=<ID=AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry"> +##INFO=<ID=nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry"> +##INFO=<ID=non_neuro_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the non_neuro subset"> +##INFO=<ID=controls_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry"> +##INFO=<ID=AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry"> +##INFO=<ID=AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry"> +##INFO=<ID=nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry"> +##INFO=<ID=controls_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the non_neuro subset"> +##INFO=<ID=AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry"> +##INFO=<ID=AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry"> +##INFO=<ID=AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry"> +##INFO=<ID=nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry"> +##INFO=<ID=AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry"> +##INFO=<ID=AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry"> +##INFO=<ID=AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry"> +##INFO=<ID=nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry"> +##INFO=<ID=AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry"> +##INFO=<ID=AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry"> +##INFO=<ID=AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry"> +##INFO=<ID=nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry"> +##INFO=<ID=non_topmed_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry"> +##INFO=<ID=AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry"> +##INFO=<ID=AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry"> +##INFO=<ID=nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry"> +##INFO=<ID=nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples"> +##INFO=<ID=non_neuro_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=controls_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the controls subset, before removing low-confidence genotypes"> +##INFO=<ID=controls_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the controls subset, before removing low-confidence genotypes"> +##INFO=<ID=controls_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the controls subset, before removing low-confidence genotypes"> +##INFO=<ID=controls_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the controls subset, before removing low-confidence genotypes"> +##INFO=<ID=controls_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the controls subset"> +##INFO=<ID=controls_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the controls subset"> +##INFO=<ID=controls_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the controls subset"> +##INFO=<ID=controls_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the controls subset"> +##INFO=<ID=non_topmed_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the non_topmed subset"> +##INFO=<ID=controls_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=controls_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry"> +##INFO=<ID=AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry"> +##INFO=<ID=AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry"> +##INFO=<ID=nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry"> +##INFO=<ID=controls_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=controls_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the controls subset"> +##INFO=<ID=controls_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the controls subset"> +##INFO=<ID=controls_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the controls subset"> +##INFO=<ID=AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry"> +##INFO=<ID=AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry"> +##INFO=<ID=AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry"> +##INFO=<ID=nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry"> +##INFO=<ID=controls_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the controls subset"> +##INFO=<ID=controls_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the controls subset"> +##INFO=<ID=controls_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=controls_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples"> +##INFO=<ID=AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples"> +##INFO=<ID=AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples"> +##INFO=<ID=nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples"> +##INFO=<ID=non_neuro_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=controls_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the controls subset"> +##INFO=<ID=non_topmed_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_topmed subset"> +##INFO=<ID=non_topmed_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_topmed subset"> +##INFO=<ID=non_topmed_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_topmed subset"> +##INFO=<ID=controls_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the non_topmed subset"> +##INFO=<ID=controls_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the controls subset"> +##INFO=<ID=non_topmed_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=controls_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_neuro subset"> +##INFO=<ID=non_neuro_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_neuro subset"> +##INFO=<ID=non_neuro_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_neuro subset"> +##INFO=<ID=non_topmed_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_topmed subset, before removing low-confidence genotypes"> +##INFO=<ID=non_topmed_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_topmed subset, before removing low-confidence genotypes"> +##INFO=<ID=non_topmed_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_topmed subset, before removing low-confidence genotypes"> +##INFO=<ID=non_topmed_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_topmed subset, before removing low-confidence genotypes"> +##INFO=<ID=non_neuro_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry"> +##INFO=<ID=AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry"> +##INFO=<ID=AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry"> +##INFO=<ID=nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry"> +##INFO=<ID=non_topmed_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry"> +##INFO=<ID=AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry"> +##INFO=<ID=AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry"> +##INFO=<ID=nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry"> +##INFO=<ID=controls_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the controls subset"> +##INFO=<ID=non_neuro_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=controls_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the controls subset"> +##INFO=<ID=AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry"> +##INFO=<ID=AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry"> +##INFO=<ID=AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry"> +##INFO=<ID=nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry"> +##INFO=<ID=non_topmed_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the non_topmed subset"> +##INFO=<ID=non_neuro_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_neuro_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_neuro subset, before removing low-confidence genotypes"> +##INFO=<ID=non_neuro_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_neuro subset, before removing low-confidence genotypes"> +##INFO=<ID=non_neuro_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_neuro subset, before removing low-confidence genotypes"> +##INFO=<ID=non_neuro_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_neuro subset, before removing low-confidence genotypes"> +##INFO=<ID=non_topmed_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry"> +##INFO=<ID=AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry"> +##INFO=<ID=AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry"> +##INFO=<ID=nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry"> +##INFO=<ID=AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry"> +##INFO=<ID=AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry"> +##INFO=<ID=AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry"> +##INFO=<ID=nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry"> +##INFO=<ID=controls_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the controls subset"> +##INFO=<ID=AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=non_neuro_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the non_neuro subset"> +##INFO=<ID=AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=controls_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the controls subset"> +##INFO=<ID=controls_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the controls subset"> +##INFO=<ID=controls_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the controls subset"> +##INFO=<ID=non_topmed_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry"> +##INFO=<ID=AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry"> +##INFO=<ID=AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry"> +##INFO=<ID=nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry"> +##INFO=<ID=non_neuro_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=controls_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the controls subset"> +##INFO=<ID=controls_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the controls subset"> +##INFO=<ID=controls_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the controls subset"> +##INFO=<ID=controls_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the controls subset"> +##INFO=<ID=non_topmed_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=controls_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=non_topmed_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> +##INFO=<ID=non_neuro_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples"> +##INFO=<ID=AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples"> +##INFO=<ID=AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples"> +##INFO=<ID=nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples"> +##INFO=<ID=controls_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the controls subset"> +##INFO=<ID=controls_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=controls_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the controls subset"> +##INFO=<ID=AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry"> +##INFO=<ID=AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry"> +##INFO=<ID=AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry"> +##INFO=<ID=nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry"> +##INFO=<ID=AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry"> +##INFO=<ID=AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry"> +##INFO=<ID=AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry"> +##INFO=<ID=nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry"> +##INFO=<ID=AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry"> +##INFO=<ID=AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry"> +##INFO=<ID=AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry"> +##INFO=<ID=nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry"> +##INFO=<ID=non_neuro_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=controls_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the controls subset"> +##INFO=<ID=controls_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the controls subset"> +##INFO=<ID=controls_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the controls subset"> +##INFO=<ID=controls_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the controls subset"> +##INFO=<ID=non_neuro_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_topmed subset"> +##INFO=<ID=faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry"> +##INFO=<ID=faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry"> +##INFO=<ID=controls_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=controls_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the controls subset"> +##INFO=<ID=faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry"> +##INFO=<ID=faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry"> +##INFO=<ID=faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry"> +##INFO=<ID=faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry"> +##INFO=<ID=faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples"> +##INFO=<ID=faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples"> +##INFO=<ID=non_neuro_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_neuro subset"> +##INFO=<ID=controls_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=controls_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the controls subset"> +##INFO=<ID=non_topmed_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the non_topmed subset"> +##INFO=<ID=non_topmed_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the non_topmed subset"> +##INFO=<ID=non_neuro_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the non_neuro subset"> +##INFO=<ID=non_neuro_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the non_neuro subset"> +##INFO=<ID=non_topmed_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_topmed subset"> +##INFO=<ID=controls_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the controls subset"> +##INFO=<ID=controls_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the controls subset"> +##INFO=<ID=faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry"> +##INFO=<ID=faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry"> +##INFO=<ID=non_topmed_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_topmed subset"> +##INFO=<ID=controls_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the controls subset"> +##INFO=<ID=controls_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the controls subset"> +##INFO=<ID=non_neuro_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_neuro_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_neuro subset"> +##INFO=<ID=non_topmed_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=non_topmed_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_topmed subset"> +##INFO=<ID=controls_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the controls subset"> +##INFO=<ID=controls_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the controls subset"> +##INFO=<ID=controls_popmax,Number=A,Type=String,Description="Population with maximum AF in the controls subset"> +##INFO=<ID=controls_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the controls subset"> +##INFO=<ID=controls_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the controls subset"> +##INFO=<ID=controls_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the controls subset"> +##INFO=<ID=controls_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the controls subset"> +##INFO=<ID=popmax,Number=A,Type=String,Description="Population with maximum AF"> +##INFO=<ID=AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF"> +##INFO=<ID=AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF"> +##INFO=<ID=AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry)"> +##INFO=<ID=nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency"> +##INFO=<ID=age_hist_het_bin_freq,Number=A,Type=String,Description="Histogram of ages of heterozygous individuals; bin edges are: 30.0|35.0|40.0|45.0|50.0|55.0|60.0|65.0|70.0|75.0|80.0; total number of individuals of any genotype bin: 2522|623|663|923|1363|1666|1254|1001|640|362|154|70"> +##INFO=<ID=age_hist_het_n_smaller,Number=A,Type=Integer,Description="Count of age values falling below lowest histogram bin edge for heterozygous individuals"> +##INFO=<ID=age_hist_het_n_larger,Number=A,Type=Integer,Description="Count of age values falling above highest histogram bin edge for heterozygous individuals"> +##INFO=<ID=age_hist_hom_bin_freq,Number=A,Type=String,Description="Histogram of ages of homozygous alternate individuals; bin edges are: 30.0|35.0|40.0|45.0|50.0|55.0|60.0|65.0|70.0|75.0|80.0; total number of individuals of any genotype bin: 2522|623|663|923|1363|1666|1254|1001|640|362|154|70"> +##INFO=<ID=age_hist_hom_n_smaller,Number=A,Type=Integer,Description="Count of age values falling below lowest histogram bin edge for homozygous alternate individuals"> +##INFO=<ID=age_hist_hom_n_larger,Number=A,Type=Integer,Description="Count of age values falling above highest histogram bin edge for homozygous alternate individuals"> +##INFO=<ID=non_neuro_popmax,Number=A,Type=String,Description="Population with maximum AF in the non_neuro subset"> +##INFO=<ID=non_neuro_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the non_neuro subset"> +##INFO=<ID=non_neuro_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the non_neuro subset"> +##INFO=<ID=non_neuro_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the non_neuro subset"> +##INFO=<ID=non_neuro_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the non_neuro subset"> +##INFO=<ID=non_topmed_popmax,Number=A,Type=String,Description="Population with maximum AF in the non_topmed subset"> +##INFO=<ID=non_topmed_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the non_topmed subset"> +##INFO=<ID=non_topmed_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the non_topmed subset"> +##INFO=<ID=non_topmed_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the non_topmed subset"> +##INFO=<ID=non_topmed_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the non_topmed subset"> +##INFO=<ID=vep,Number=.,Type=String,Description="Consequence annotations from Ensembl VEP. Format: Allele|Consequence|IMPACT|SYMBOL|Gene|Feature_type|Feature|BIOTYPE|EXON|INTRON|HGVSc|HGVSp|cDNA_position|CDS_position|Protein_position|Amino_acids|Codons|Existing_variation|ALLELE_NUM|DISTANCE|STRAND|FLAGS|VARIANT_CLASS|MINIMISED|SYMBOL_SOURCE|HGNC_ID|CANONICAL|TSL|APPRIS|CCDS|ENSP|SWISSPROT|TREMBL|UNIPARC|GENE_PHENO|SIFT|PolyPhen|DOMAINS|HGVS_OFFSET|GMAF|AFR_MAF|AMR_MAF|EAS_MAF|EUR_MAF|SAS_MAF|AA_MAF|EA_MAF|ExAC_MAF|ExAC_Adj_MAF|ExAC_AFR_MAF|ExAC_AMR_MAF|ExAC_EAS_MAF|ExAC_FIN_MAF|ExAC_NFE_MAF|ExAC_OTH_MAF|ExAC_SAS_MAF|CLIN_SIG|SOMATIC|PHENO|PUBMED|MOTIF_NAME|MOTIF_POS|HIGH_INF_POS|MOTIF_SCORE_CHANGE|LoF|LoF_filter|LoF_flags|LoF_info"> +##contig=<ID=1,length=249250621,assembly=gnomAD_GRCh37> +##contig=<ID=2,length=243199373,assembly=gnomAD_GRCh37> +##contig=<ID=3,length=198022430,assembly=gnomAD_GRCh37> +##contig=<ID=4,length=191154276,assembly=gnomAD_GRCh37> +##contig=<ID=5,length=180915260,assembly=gnomAD_GRCh37> +##contig=<ID=6,length=171115067,assembly=gnomAD_GRCh37> +##contig=<ID=7,length=159138663,assembly=gnomAD_GRCh37> +##contig=<ID=8,length=146364022,assembly=gnomAD_GRCh37> +##contig=<ID=9,length=141213431,assembly=gnomAD_GRCh37> +##contig=<ID=10,length=135534747,assembly=gnomAD_GRCh37> +##contig=<ID=11,length=135006516,assembly=gnomAD_GRCh37> +##contig=<ID=12,length=133851895,assembly=gnomAD_GRCh37> +##contig=<ID=13,length=115169878,assembly=gnomAD_GRCh37> +##contig=<ID=14,length=107349540,assembly=gnomAD_GRCh37> +##contig=<ID=15,length=102531392,assembly=gnomAD_GRCh37> +##contig=<ID=16,length=90354753,assembly=gnomAD_GRCh37> +##contig=<ID=17,length=81195210,assembly=gnomAD_GRCh37> +##contig=<ID=18,length=78077248,assembly=gnomAD_GRCh37> +##contig=<ID=19,length=59128983,assembly=gnomAD_GRCh37> +##contig=<ID=20,length=63025520,assembly=gnomAD_GRCh37> +##contig=<ID=21,length=48129895,assembly=gnomAD_GRCh37> +##contig=<ID=22,length=51304566,assembly=gnomAD_GRCh37> +##contig=<ID=X,length=155270560,assembly=gnomAD_GRCh37> +##contig=<ID=Y,length=59373566,assembly=gnomAD_GRCh37> +#CHROM POS ID REF ALT QUAL FILTER INFO +3 46414935 rs938517991 AT A 9974.16 PASS AC=2;AN=250946;AF=7.96984e-06;rf_tp_probability=7.30763e-01;FS=6.15000e-01;InbreedingCoeff=3.17000e-02;MQ=5.14700e+01;MQRankSum=2.82000e-01;QD=2.79400e+01;ReadPosRankSum=-6.86000e-01;SOR=6.59000e-01;BaseQRankSum=-1.73300e+00;ClippingRankSum=-2.84000e-01;DP=8634492;VQSLOD=1.82000e+00;VQSR_culprit=FS;segdup;variant_type=indel;allele_type=del;n_alt_alleles=1;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|1;gq_hist_all_bin_freq=31|39|36|114|142|101|239|274|152|334|372|207|850|196|647|369|1084|164|1324|119070;dp_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0;dp_hist_alt_n_larger=1;dp_hist_all_bin_freq=26|124|288|371|677|862|7327|47694|38309|14081|5588|3216|1941|1338|875|614|486|350|301|238;dp_hist_all_n_larger=1042;ab_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0;AC_nfe_seu=0;AN_nfe_seu=11470;AF_nfe_seu=0.00000e+00;nhomalt_nfe_seu=0;controls_AC_afr_male=0;controls_AN_afr_male=2924;controls_AF_afr_male=0.00000e+00;controls_nhomalt_afr_male=0;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3816;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=0;non_topmed_AN_amr=34444;non_topmed_AF_amr=0.00000e+00;non_topmed_nhomalt_amr=0;non_cancer_AC_asj_female=0;non_cancer_AN_asj_female=4594;non_cancer_AF_asj_female=0.00000e+00;non_cancer_nhomalt_asj_female=0;AC_raw=2;AN_raw=251490;AF_raw=7.95260e-06;nhomalt_raw=1;AC_fin_female=0;AN_fin_female=10346;AF_fin_female=0.00000e+00;nhomalt_fin_female=0;non_cancer_AC_oth_female=0;non_cancer_AN_oth_female=2672;non_cancer_AF_oth_female=0.00000e+00;non_cancer_nhomalt_oth_female=0;AC_nfe_bgr=0;AN_nfe_bgr=2670;AF_nfe_bgr=0.00000e+00;nhomalt_nfe_bgr=0;non_neuro_AC_asj_female=0;non_neuro_AN_asj_female=3084;non_neuro_AF_asj_female=0.00000e+00;non_neuro_nhomalt_asj_female=0;AC_sas_male=0;AN_sas_male=23072;AF_sas_male=0.00000e+00;nhomalt_sas_male=0;non_neuro_AC_afr_male=0;non_neuro_AN_afr_male=6164;non_neuro_AF_afr_male=0.00000e+00;non_neuro_nhomalt_afr_male=0;AC_afr_male=0;AN_afr_male=6186;AF_afr_male=0.00000e+00;nhomalt_afr_male=0;AC_afr=0;AN_afr=16192;AF_afr=0.00000e+00;nhomalt_afr=0;controls_AC_nfe_swe=0;controls_AN_nfe_swe=12810;controls_AF_nfe_swe=0.00000e+00;controls_nhomalt_nfe_swe=0;non_neuro_AC_afr_female=0;non_neuro_AN_afr_female=9990;non_neuro_AF_afr_female=0.00000e+00;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=0;non_topmed_AN_amr_female=20188;non_topmed_AF_amr_female=0.00000e+00;non_topmed_nhomalt_amr_female=0;non_cancer_AC_female=2;non_cancer_AN_female=107412;non_cancer_AF_female=1.86199e-05;non_cancer_nhomalt_female=1;non_cancer_AC_nfe_onf=0;non_cancer_AN_nfe_onf=24540;non_cancer_AF_nfe_onf=0.00000e+00;non_cancer_nhomalt_nfe_onf=0;non_cancer_AC_male=0;non_cancer_AN_male=129014;non_cancer_AF_male=0.00000e+00;non_cancer_nhomalt_male=0;non_topmed_AC_oth_female=0;non_topmed_AN_oth_female=2870;non_topmed_AF_oth_female=0.00000e+00;non_topmed_nhomalt_oth_female=0;AC_eas_female=0;AN_eas_female=9328;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=0;non_cancer_AN_sas_female=7494;non_cancer_AF_sas_female=0.00000e+00;non_cancer_nhomalt_sas_female=0;AC_afr_female=0;AN_afr_female=10006;AF_afr_female=0.00000e+00;nhomalt_afr_female=0;AC_sas=0;AN_sas=30616;AF_sas=0.00000e+00;nhomalt_sas=0;non_neuro_AC_female=2;non_neuro_AN_female=95468;non_neuro_AF_female=2.09494e-05;non_neuro_nhomalt_female=1;controls_AC_afr=0;controls_AN_afr=7164;controls_AF_afr=0.00000e+00;controls_nhomalt_afr=0;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=0;AN_nfe_onf=30864;AF_nfe_onf=0.00000e+00;nhomalt_nfe_onf=0;non_cancer_AC_amr_male=0;non_cancer_AN_amr_male=14166;non_cancer_AF_amr_male=0.00000e+00;non_cancer_nhomalt_amr_male=0;controls_AC_fin_male=0;controls_AN_fin_male=6904;controls_AF_fin_male=0.00000e+00;controls_nhomalt_fin_male=0;non_neuro_AC_nfe_nwe=2;non_neuro_AN_nfe_nwe=35284;non_neuro_AF_nfe_nwe=5.66829e-05;non_neuro_nhomalt_nfe_nwe=1;AC_fin_male=0;AN_fin_male=11254;AF_fin_male=0.00000e+00;nhomalt_fin_male=0;AC_nfe_female=2;AN_nfe_female=49966;AF_nfe_female=4.00272e-05;nhomalt_nfe_female=1;AC_amr=0;AN_amr=34578;AF_amr=0.00000e+00;nhomalt_amr=0;non_topmed_AC_nfe_male=0;non_topmed_AN_nfe_male=62670;non_topmed_AF_nfe_male=0.00000e+00;non_topmed_nhomalt_nfe_male=0;non_neuro_AC_sas=0;non_neuro_AN_sas=30608;non_neuro_AF_sas=0.00000e+00;non_neuro_nhomalt_sas=0;non_cancer_AC_fin_male=0;non_cancer_AN_fin_male=11250;non_cancer_AF_fin_male=0.00000e+00;non_cancer_nhomalt_fin_male=0;non_cancer_AC_nfe_seu=0;non_cancer_AN_nfe_seu=10580;non_cancer_AF_nfe_seu=0.00000e+00;non_cancer_nhomalt_nfe_seu=0;AC_eas=0;AN_eas=18394;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=1;non_neuro_AC_nfe_female=2;non_neuro_AN_nfe_female=39740;non_neuro_AF_nfe_female=5.03271e-05;non_neuro_nhomalt_nfe_female=1;non_neuro_AC_afr=0;non_neuro_AN_afr=16154;non_neuro_AF_afr=0.00000e+00;non_neuro_nhomalt_afr=0;controls_AC_raw=2;controls_AN_raw=109408;controls_AF_raw=1.82802e-05;controls_nhomalt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r=0.00000e+00;non_neuro_faf99_afr=0.00000e+00;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=0.00000e+00;non_neuro_faf99_amr=0.00000e+00;non_topmed_faf95_sas=0.00000e+00;non_topmed_faf99_sas=0.00000e+00;controls_faf95_nfe=7.75000e-06;controls_faf99_nfe=7.90000e-06;non_cancer_faf95_afr=0.00000e+00;non_cancer_faf99_afr=0.00000e+00;non_cancer_faf95_amr=0.00000e+00;non_cancer_faf99_amr=0.00000e+00;non_topmed_faf95=1.36000e-06;non_topmed_faf99=5.10000e-07;non_neuro_faf95_nfe=3.71000e-06;non_neuro_faf99_nfe=3.39000e-06;non_neuro_faf95=1.60000e-06;non_neuro_faf99=1.60000e-06;non_topmed_faf95_nfe=2.98000e-06;non_topmed_faf99_nfe=3.12000e-06;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=0.00000e+00;controls_faf99_sas=0.00000e+00;faf95_nfe=2.93000e-06;faf99_nfe=3.10000e-06;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=0.00000e+00;controls_faf99_amr=0.00000e+00;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_cancer_faf95_nfe=3.24000e-06;non_cancer_faf99_nfe=3.21000e-06;non_cancer_faf95=1.41000e-06;non_cancer_faf99=5.30000e-07;non_cancer_faf95_sas=0.00000e+00;non_cancer_faf99_sas=0.00000e+00;non_topmed_faf95_afr=0.00000e+00;non_topmed_faf99_afr=0.00000e+00;controls_faf95=3.04000e-06;controls_faf99=3.14000e-06;popmax=nfe;AC_popmax=2;AN_popmax=113380;AF_popmax=1.76398e-05;nhomalt_popmax=1;age_hist_het_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_het_n_smaller=0;age_hist_het_n_larger=0;age_hist_hom_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;non_topmed_popmax=nfe;non_topmed_AC_popmax=2;non_topmed_AN_popmax=111300;non_topmed_AF_popmax=1.79695e-05;non_topmed_nhomalt_popmax=1;non_neuro_popmax=nfe;non_neuro_AC_popmax=2;non_neuro_AN_popmax=89416;non_neuro_AF_popmax=2.23674e-05;non_neuro_nhomalt_popmax=1;non_cancer_popmax=nfe;non_cancer_AC_popmax=2;non_cancer_AN_popmax=102380;non_cancer_AF_popmax=1.95351e-05;non_cancer_nhomalt_popmax=1;controls_popmax=nfe;controls_AC_popmax=2;controls_AN_popmax=42750;controls_AF_popmax=4.67836e-05;controls_nhomalt_popmax=1;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.546delT|ENSP00000292303.4:p.Pro183HisfsTer14|689|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3||||||||||||||||||||||||||HC|||GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-553&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.546delT|ENSP00000343985.4:p.Pro183HisfsTer14|900|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110|3||||||||||||||||||||||||||HC|||GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-553&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.546delT|ENSP00000404881.1:p.Pro183HisfsTer14|776|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110|3||||||||||||||||||||||||||HC||SINGLE_EXON|GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-775&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2028delA||||||||1||-1||deletion|1|Clone_based_vega_gene||YES||||||||||||||||||||||||||||||||||||||||| +3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 74264261.52 PASS AC=18640;AN=251006;AF=7.42612e-02;rf_tp_probability=7.40136e-01;FS=1.76900e+00;InbreedingCoeff=2.78000e-02;MQ=5.34100e+01;MQRankSum=-6.57200e+00;QD=1.49000e+01;ReadPosRankSum=-3.87000e-01;SOR=6.17000e-01;VQSR_POSITIVE_TRAIN_SITE;BaseQRankSum=1.27000e+00;ClippingRankSum=-4.00000e-03;DP=12360054;VQSLOD=1.54000e+00;VQSR_culprit=MQRankSum;segdup;rf_positive_label;rf_label=TP;rf_train;variant_type=mixed;allele_type=del;n_alt_alleles=2;was_mixed;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|2|3|3|0|1|1|4|4|8|6|4|9|5|14|9|10|13|11|17651;gq_hist_all_bin_freq=35|21|18|41|68|50|96|142|88|187|181|97|371|113|317|193|524|127|739|122337;dp_hist_alt_bin_freq=4|21|30|42|78|135|195|326|396|549|644|740|684|801|667|616|514|449|410|378;dp_hist_alt_n_larger=10079;dp_hist_all_bin_freq=24|119|259|384|577|783|6619|44130|35571|12320|4446|2614|1673|1467|1079|894|716|585|532|480;dp_hist_all_n_larger=10476;ab_hist_alt_bin_freq=0|1|9|46|240|959|2896|6505|4575|1107|318|50|13|6|0|4|0|2|11|42;AC_nfe_seu=765;AN_nfe_seu=11476;AF_nfe_seu=6.66609e-02;nhomalt_nfe_seu=31;controls_AC_afr_male=40;controls_AN_afr_male=2924;controls_AF_afr_male=1.36799e-02;controls_nhomalt_afr_male=1;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3814;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=1012;non_topmed_AN_amr=34446;non_topmed_AF_amr=2.93793e-02;non_topmed_nhomalt_amr=10;non_cancer_AC_asj_female=577;non_cancer_AN_asj_female=4592;non_cancer_AF_asj_female=1.25653e-01;non_cancer_nhomalt_asj_female=43;AC_raw=18732;AN_raw=251490;AF_raw=7.44841e-02;nhomalt_raw=974;AC_fin_female=1378;AN_fin_female=10336;AF_fin_female=1.33320e-01;nhomalt_fin_female=87;non_cancer_AC_oth_female=195;non_cancer_AN_oth_female=2672;non_cancer_AF_oth_female=7.29790e-02;non_cancer_nhomalt_oth_female=10;AC_nfe_bgr=173;AN_nfe_bgr=2670;AF_nfe_bgr=6.47940e-02;nhomalt_nfe_bgr=7;non_neuro_AC_asj_female=393;non_neuro_AN_asj_female=3086;non_neuro_AF_asj_female=1.27349e-01;non_neuro_nhomalt_asj_female=28;AC_sas_male=391;AN_sas_male=23066;AF_sas_male=1.69514e-02;nhomalt_sas_male=5;non_neuro_AC_afr_male=106;non_neuro_AN_afr_male=6162;non_neuro_AF_afr_male=1.72022e-02;non_neuro_nhomalt_afr_male=2;AC_afr_male=107;AN_afr_male=6184;AF_afr_male=1.73027e-02;nhomalt_afr_male=2;AC_afr=311;AN_afr=16196;AF_afr=1.92023e-02;nhomalt_afr=2;controls_AC_nfe_swe=1578;controls_AN_nfe_swe=12810;controls_AF_nfe_swe=1.23185e-01;controls_nhomalt_nfe_swe=78;non_neuro_AC_afr_female=203;non_neuro_AN_afr_female=9996;non_neuro_AF_afr_female=2.03081e-02;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=568;non_topmed_AN_amr_female=20190;non_topmed_AF_amr_female=2.81327e-02;non_topmed_nhomalt_amr_female=5;non_cancer_AC_female=7819;non_cancer_AN_female=107454;non_cancer_AF_female=7.27660e-02;non_cancer_nhomalt_female=408;non_cancer_AC_nfe_onf=2601;non_cancer_AN_nfe_onf=24572;non_cancer_AF_nfe_onf=1.05852e-01;non_cancer_nhomalt_nfe_onf=132;non_cancer_AC_male=9543;non_cancer_AN_male=129014;non_cancer_AF_male=7.39687e-02;non_cancer_nhomalt_male=504;non_topmed_AC_oth_female=210;non_topmed_AN_oth_female=2870;non_topmed_AF_oth_female=7.31707e-02;non_topmed_nhomalt_oth_female=11;AC_eas_female=0;AN_eas_female=9326;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=98;non_cancer_AN_sas_female=7494;non_cancer_AF_sas_female=1.30771e-02;non_cancer_nhomalt_sas_female=0;AC_afr_female=204;AN_afr_female=10012;AF_afr_female=2.03755e-02;nhomalt_afr_female=0;AC_sas=489;AN_sas=30610;AF_sas=1.59752e-02;nhomalt_sas=5;non_neuro_AC_female=6734;non_neuro_AN_female=95514;non_neuro_AF_female=7.05028e-02;non_neuro_nhomalt_female=351;controls_AC_afr=111;controls_AN_afr=7164;controls_AF_afr=1.54941e-02;controls_nhomalt_afr=1;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=3264;AN_nfe_onf=30904;AF_nfe_onf=1.05617e-01;nhomalt_nfe_onf=163;non_cancer_AC_amr_male=434;non_cancer_AN_amr_male=14166;non_cancer_AF_amr_male=3.06367e-02;non_cancer_nhomalt_amr_male=5;controls_AC_fin_male=899;controls_AN_fin_male=6890;controls_AF_fin_male=1.30479e-01;controls_nhomalt_fin_male=59;non_neuro_AC_nfe_nwe=4096;non_neuro_AN_nfe_nwe=35318;non_neuro_AF_nfe_nwe=1.15975e-01;non_neuro_nhomalt_nfe_nwe=236;AC_fin_male=1503;AN_fin_male=11244;AF_fin_male=1.33671e-01;nhomalt_fin_male=105;AC_nfe_female=5454;AN_nfe_female=50030;AF_nfe_female=1.09015e-01;nhomalt_nfe_female=293;AC_amr=1014;AN_amr=34580;AF_amr=2.93233e-02;nhomalt_amr=10;non_topmed_AC_nfe_male=6681;non_topmed_AN_nfe_male=62690;non_topmed_AF_nfe_male=1.06572e-01;non_topmed_nhomalt_nfe_male=350;non_neuro_AC_sas=489;non_neuro_AN_sas=30602;non_neuro_AF_sas=1.59793e-02;non_neuro_nhomalt_sas=5;non_cancer_AC_fin_male=1503;non_cancer_AN_fin_male=11240;non_cancer_AF_fin_male=1.33719e-01;non_cancer_nhomalt_fin_male=105;non_cancer_AC_nfe_seu=709;non_cancer_AN_nfe_seu=10584;non_cancer_AF_nfe_seu=6.69879e-02;non_cancer_nhomalt_nfe_seu=28;AC_eas=2;AN_eas=18392;AF_eas=1.08743e-04;nhomalt_eas=0;nhomalt=966;non_neuro_AC_nfe_female=4371;non_neuro_AN_nfe_female=39790;non_neuro_AF_nfe_female=1.09852e-01;non_neuro_nhomalt_nfe_female=241;non_neuro_AC_afr=309;non_neuro_AN_afr=16158;non_neuro_AF_afr=1.91237e-02;non_neuro_nhomalt_afr=2;controls_AC_raw=7712;controls_AN_raw=109408;controls_AF_raw=7.04884e-02;controls_nhomalt_raw=398;non_cancer_AC_eas=0;non_cancer_AN_eas=17690;non_cancer_AF_eas=0.00000e+00;non_cancer_nhomalt_eas=0;non_cancer_AC_amr_female=559;non_cancer_AN_amr_female=20082;non_cancer_AF_amr_female=2.78359e-02;non_cancer_nhomalt_amr_female=5;non_neuro_AC_nfe_swe=1812;non_neuro_AN_nfe_swe=14776;non_neuro_AF_nfe_swe=1.22631e-01;non_neuro_nhomalt_nfe_swe=97;controls_AC_male=4146;controls_AN_male=58070;controls_AF_male=7.13966e-02;controls_nhomalt_male=212;non_topmed_AC_male=10003;non_topmed_AN_male=133316;non_topmed_AF_male=7.50323e-02;non_topmed_nhomalt_male=520;controls_AC_eas_jpn=0;controls_AN_eas_jpn=114;controls_AF_eas_jpn=0.00000e+00;controls_nhomalt_eas_jpn=0;controls_AC_nfe_female=2070;controls_AN_nfe_female=19146;controls_AF_nfe_female=1.08117e-01;controls_nhomalt_nfe_female=111;non_neuro_AC_amr=848;non_neuro_AN_amr=30516;non_neuro_AF_amr=2.77887e-02;non_neuro_nhomalt_amr=9;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=6840;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=682;AN_asj_male=5172;AF_asj_male=1.31864e-01;nhomalt_asj_male=41;controls_AC_nfe_male=2576;controls_AN_nfe_male=23610;controls_AF_nfe_male=1.09106e-01;controls_nhomalt_nfe_male=138;non_neuro_AC_fin=2261;non_neuro_AN_fin=16666;non_neuro_AF_fin=1.35665e-01;non_neuro_nhomalt_fin=155;non_topmed_AC_sas=489;non_topmed_AN_sas=30610;non_topmed_AF_sas=1.59752e-02;non_topmed_nhomalt_sas=5;non_cancer_AC_nfe_female=4823;non_cancer_AN_nfe_female=44172;non_cancer_AF_nfe_female=1.09187e-01;non_cancer_nhomalt_nfe_female=263;AC_oth_female=214;AN_oth_female=2918;AF_oth_female=7.33379e-02;nhomalt_oth_female=11;non_cancer_AC_asj=1236;non_cancer_AN_asj=9560;non_cancer_AF_asj=1.29289e-01;non_cancer_nhomalt_asj=82;AC_nfe_swe=3166;AN_nfe_swe=26128;AF_nfe_swe=1.21173e-01;nhomalt_nfe_swe=167;controls_AC_nfe=4646;controls_AN_nfe=42756;controls_AF_nfe=1.08663e-01;controls_nhomalt_nfe=249;controls_AC_oth_female=75;controls_AN_oth_female=986;controls_AF_oth_female=7.60649e-02;controls_nhomalt_oth_female=5;controls_AC_asj=299;controls_AN_asj=2320;controls_AF_asj=1.28879e-01;controls_nhomalt_asj=13;non_neuro_AC_amr_male=368;non_neuro_AN_amr_male=12252;non_neuro_AF_amr_male=3.00359e-02;non_neuro_nhomalt_amr_male=4;controls_AC_nfe_nwe=1658;controls_AN_nfe_nwe=14442;controls_AF_nfe_nwe=1.14804e-01;controls_nhomalt_nfe_nwe=102;AC_nfe_nwe=4816;AN_nfe_nwe=42042;AF_nfe_nwe=1.14552e-01;nhomalt_nfe_nwe=278;controls_AC_nfe_seu=324;controls_AN_nfe_seu=4760;controls_AF_nfe_seu=6.80672e-02;controls_nhomalt_nfe_seu=13;controls_AC_sas_female=63;controls_AN_sas_female=4214;controls_AF_sas_female=1.49502e-02;controls_nhomalt_sas_female=0;non_neuro_AC_amr_female=480;non_neuro_AN_amr_female=18264;non_neuro_AF_amr_female=2.62812e-02;non_neuro_nhomalt_amr_female=5;non_cancer_AC_eas_jpn=0;non_cancer_AN_eas_jpn=124;non_cancer_AF_eas_jpn=0.00000e+00;non_cancer_nhomalt_eas_jpn=0;non_neuro_AC_nfe_onf=2954;non_neuro_AN_nfe_onf=27774;non_neuro_AF_nfe_onf=1.06358e-01;non_neuro_nhomalt_nfe_onf=153;non_topmed_AC_eas_male=2;non_topmed_AN_eas_male=9062;non_topmed_AF_eas_male=2.20702e-04;non_topmed_nhomalt_eas_male=0;AC_eas_jpn=0;AN_eas_jpn=152;AF_eas_jpn=0.00000e+00;nhomalt_eas_jpn=0;non_cancer_AC_afr_male=90;non_cancer_AN_afr_male=5670;non_cancer_AF_afr_male=1.58730e-02;non_cancer_nhomalt_afr_male=2;non_cancer_AC_afr=282;non_cancer_AN_afr=14842;non_cancer_AF_afr=1.90001e-02;non_cancer_nhomalt_afr=2;controls_AC_amr_female=254;controls_AN_amr_female=10224;controls_AF_amr_female=2.48435e-02;controls_nhomalt_amr_female=1;non_neuro_AC_fin_male=1228;non_neuro_AN_fin_male=9054;non_neuro_AF_fin_male=1.35631e-01;non_neuro_nhomalt_fin_male=85;AC_female=8532;AN_female=115328;AF_female=7.39803e-02;nhomalt_female=441;non_neuro_AC_nfe_bgr=27;non_neuro_AN_nfe_bgr=452;non_neuro_AF_nfe_bgr=5.97345e-02;non_neuro_nhomalt_nfe_bgr=2;non_neuro_AC_oth_male=170;non_neuro_AN_oth_male=2472;non_neuro_AF_oth_male=6.87702e-02;non_neuro_nhomalt_oth_male=9;non_topmed_AC_nfe_est=18;non_topmed_AN_nfe_est=238;non_topmed_AF_nfe_est=7.56303e-02;non_topmed_nhomalt_nfe_est=0;non_topmed_AC_nfe_nwe=4720;non_topmed_AN_nfe_nwe=40928;non_topmed_AF_nfe_nwe=1.15324e-01;non_topmed_nhomalt_nfe_nwe=275;non_topmed_AC_amr_male=444;non_topmed_AN_amr_male=14256;non_topmed_AF_amr_male=3.11448e-02;non_topmed_nhomalt_amr_male=5;non_cancer_AC_amr=993;non_cancer_AN_amr=34248;non_cancer_AF_amr=2.89944e-02;non_cancer_nhomalt_amr=10;non_topmed_AC_nfe_swe=3161;non_topmed_AN_nfe_swe=26066;non_topmed_AF_nfe_swe=1.21269e-01;non_topmed_nhomalt_nfe_swe=167;non_topmed_AC_nfe_onf=3196;non_topmed_AN_nfe_onf=30108;non_topmed_AF_nfe_onf=1.06151e-01;non_topmed_nhomalt_nfe_onf=157;controls_AC_eas_kor=0;controls_AN_eas_kor=1886;controls_AF_eas_kor=0.00000e+00;controls_nhomalt_eas_kor=0;non_topmed_AC_eas_oea=2;non_topmed_AN_eas_oea=14420;non_topmed_AF_eas_oea=1.38696e-04;non_topmed_nhomalt_eas_oea=0;controls_AC_eas_male=0;controls_AN_eas_male=4258;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=64;controls_AN_oth_male=928;controls_AF_oth_male=6.89655e-02;controls_nhomalt_oth_male=4;non_topmed_AC=18352;non_topmed_AN=244418;non_topmed_AF=7.50845e-02;non_topmed_nhomalt=954;controls_AC_fin=1741;controls_AN_fin=13326;controls_AF_fin=1.30647e-01;controls_nhomalt_fin=117;AC_eas_kor=0;AN_eas_kor=3816;AF_eas_kor=0.00000e+00;nhomalt_eas_kor=0;non_neuro_AC_nfe=9628;non_neuro_AN_nfe=89466;non_neuro_AF_nfe=1.07616e-01;non_neuro_nhomalt_nfe=515;non_neuro_AC_fin_female=1033;non_neuro_AN_fin_female=7612;non_neuro_AF_fin_female=1.35707e-01;non_neuro_nhomalt_fin_female=70;non_cancer_AC_nfe_male=6256;non_cancer_AN_nfe_male=58274;non_cancer_AF_nfe_male=1.07355e-01;non_cancer_nhomalt_nfe_male=334;controls_AC_eas_oea=0;controls_AN_eas_oea=7044;controls_AF_eas_oea=0.00000e+00;controls_nhomalt_eas_oea=0;non_topmed_AC_nfe_seu=761;non_topmed_AN_nfe_seu=11382;non_topmed_AF_nfe_seu=6.68600e-02;non_topmed_nhomalt_nfe_seu=31;controls_AC_eas_female=0;controls_AN_eas_female=4786;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=1289;non_topmed_AN_asj=9986;non_topmed_AF_asj=1.29081e-01;non_topmed_nhomalt_asj=85;controls_AC_nfe_onf=1032;controls_AN_nfe_onf=9996;controls_AF_nfe_onf=1.03241e-01;controls_nhomalt_nfe_onf=51;non_neuro_AC=14661;non_neuro_AN=207888;non_neuro_AF=7.05236e-02;non_neuro_nhomalt=750;AC_eas_oea=2;AN_eas_oea=14424;AF_eas_oea=1.38658e-04;nhomalt_eas_oea=0;non_topmed_AC_nfe=12028;non_topmed_AN_nfe=111384;non_topmed_AF_nfe=1.07987e-01;non_topmed_nhomalt_nfe=637;non_cancer_AC_oth=406;non_cancer_AN_oth=5598;non_cancer_AF_oth=7.25259e-02;non_cancer_nhomalt_oth=24;non_topmed_AC_raw=18438;non_topmed_AN_raw=244872;non_topmed_AF_raw=7.52965e-02;non_topmed_nhomalt_raw=962;non_neuro_AC_nfe_est=17;non_neuro_AN_nfe_est=216;non_neuro_AF_nfe_est=7.87037e-02;non_neuro_nhomalt_nfe_est=0;non_topmed_AC_oth_male=225;non_topmed_AN_oth_male=3176;non_topmed_AF_oth_male=7.08438e-02;non_topmed_nhomalt_oth_male=13;non_cancer_AC_oth_male=211;non_cancer_AN_oth_male=2926;non_cancer_AF_oth_male=7.21121e-02;non_cancer_nhomalt_oth_male=14;AC_nfe_est=19;AN_nfe_est=242;AF_nfe_est=7.85124e-02;nhomalt_nfe_est=0;non_cancer_AC_afr_female=192;non_cancer_AN_afr_female=9172;non_cancer_AF_afr_female=2.09333e-02;non_cancer_nhomalt_afr_female=0;non_topmed_AC_afr_male=78;non_topmed_AN_afr_male=4686;non_topmed_AF_afr_male=1.66453e-02;non_topmed_nhomalt_afr_male=1;AC_eas_male=2;AN_eas_male=9066;AF_eas_male=2.20604e-04;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=9044;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=2;non_neuro_AN_eas_male=6574;non_neuro_AF_eas_male=3.04229e-04;non_neuro_nhomalt_eas_male=0;non_cancer_AC_nfe_nwe=4512;non_cancer_AN_nfe_nwe=39322;non_cancer_AF_nfe_nwe=1.14745e-01;non_cancer_nhomalt_nfe_nwe=266;controls_AC_sas=257;controls_AN_sas=15686;controls_AF_sas=1.63840e-02;controls_nhomalt_sas=4;non_neuro_AC_sas_male=391;non_neuro_AN_sas_male=23060;non_neuro_AF_sas_male=1.69558e-02;non_neuro_nhomalt_sas_male=5;non_neuro_AC_asj_male=405;non_neuro_AN_asj_male=3124;non_neuro_AF_asj_male=1.29641e-01;non_neuro_nhomalt_asj_male=20;non_cancer_AC_nfe_bgr=166;non_cancer_AN_nfe_bgr=2526;non_cancer_AF_nfe_bgr=6.57165e-02;non_cancer_nhomalt_nfe_bgr=7;controls_AC_oth=139;controls_AN_oth=1914;controls_AF_oth=7.26228e-02;controls_nhomalt_oth=9;non_cancer_AC_eas_female=0;non_cancer_AN_eas_female=8946;non_cancer_AF_eas_female=0.00000e+00;non_cancer_nhomalt_eas_female=0;AC_nfe=12203;AN_nfe=113462;AF_nfe=1.07551e-01;nhomalt_nfe=646;non_topmed_AC_female=8349;non_topmed_AN_female=111102;non_topmed_AF_female=7.51472e-02;non_topmed_nhomalt_female=434;non_neuro_AC_asj=798;non_neuro_AN_asj=6210;non_neuro_AF_asj=1.28502e-01;non_neuro_nhomalt_asj=48;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=9326;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=14725;non_neuro_AN_raw=208132;non_neuro_AF_raw=7.07484e-02;non_neuro_nhomalt_raw=754;non_topmed_AC_eas=2;non_topmed_AN_eas=18388;non_topmed_AF_eas=1.08767e-04;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=1503;non_topmed_AN_fin_male=11244;non_topmed_AF_fin_male=1.33671e-01;non_topmed_nhomalt_fin_male=105;non_cancer_AC_asj_male=659;non_cancer_AN_asj_male=4968;non_cancer_AF_asj_male=1.32649e-01;non_cancer_nhomalt_asj_male=39;AC_fin=2881;AN_fin=21580;AF_fin=1.33503e-01;nhomalt_fin=192;AC_nfe_male=6749;AN_nfe_male=63432;AF_nfe_male=1.06397e-01;nhomalt_nfe_male=353;non_topmed_AC_eas_kor=0;non_topmed_AN_eas_kor=3816;non_topmed_AF_eas_kor=0.00000e+00;non_topmed_nhomalt_eas_kor=0;controls_AC_amr_male=222;controls_AN_amr_male=6882;controls_AF_amr_male=3.22581e-02;controls_nhomalt_amr_male=1;non_neuro_AC_eas_oea=2;non_neuro_AN_eas_oea=9450;non_neuro_AF_eas_oea=2.11640e-04;non_neuro_nhomalt_eas_oea=0;AC_sas_female=98;AN_sas_female=7544;AF_sas_female=1.29905e-02;nhomalt_sas_female=0;controls_AC_afr_female=71;controls_AN_afr_female=4240;controls_AF_afr_female=1.67453e-02;controls_nhomalt_afr_female=0;controls_AC_amr=476;controls_AN_amr=17106;controls_AF_amr=2.78265e-02;controls_nhomalt_amr=2;non_topmed_AC_eas_jpn=0;non_topmed_AN_eas_jpn=152;non_topmed_AF_eas_jpn=0.00000e+00;non_topmed_nhomalt_eas_jpn=0;AC_asj_female=614;AN_asj_female=4896;AF_asj_female=1.25408e-01;nhomalt_asj_female=45;non_topmed_AC_nfe_bgr=172;non_topmed_AN_nfe_bgr=2662;non_topmed_AF_nfe_bgr=6.46131e-02;non_topmed_nhomalt_nfe_bgr=7;non_cancer_AC_nfe_est=11;non_cancer_AN_nfe_est=158;non_cancer_AF_nfe_est=6.96203e-02;non_cancer_nhomalt_nfe_est=0;non_neuro_AC_eas=2;non_neuro_AN_eas=13414;non_neuro_AF_eas=1.49098e-04;non_neuro_nhomalt_eas=0;non_cancer_AC_nfe=11079;non_cancer_AN_nfe=102446;non_cancer_AF_nfe=1.08145e-01;non_cancer_nhomalt_nfe=597;non_neuro_AC_male=7927;non_neuro_AN_male=112374;non_neuro_AF_male=7.05412e-02;non_neuro_nhomalt_male=399;non_neuro_AC_sas_female=98;non_neuro_AN_sas_female=7542;non_neuro_AF_sas_female=1.29939e-02;non_neuro_nhomalt_sas_female=0;AC_asj=1296;AN_asj=10068;AF_asj=1.28725e-01;nhomalt_asj=86;controls_AC_nfe_est=7;controls_AN_nfe_est=70;controls_AF_nfe_est=1.00000e-01;controls_nhomalt_nfe_est=0;non_topmed_AC_asj_female=610;non_topmed_AN_asj_female=4850;non_topmed_AF_asj_female=1.25773e-01;non_topmed_nhomalt_asj_female=44;non_cancer_AC_nfe_swe=3080;non_cancer_AN_nfe_swe=25284;non_cancer_AF_nfe_swe=1.21816e-01;non_cancer_nhomalt_nfe_swe=164;non_cancer_AC=17362;non_cancer_AN=236468;non_cancer_AF=7.34222e-02;non_cancer_nhomalt=912;non_topmed_AC_oth=435;non_topmed_AN_oth=6046;non_topmed_AF_oth=7.19484e-02;non_topmed_nhomalt_oth=24;non_topmed_AC_fin_female=1378;non_topmed_AN_fin_female=10334;non_topmed_AF_fin_female=1.33346e-01;non_topmed_nhomalt_fin_female=87;non_cancer_AC_fin_female=1375;non_cancer_AN_fin_female=10324;non_cancer_AF_fin_female=1.33185e-01;non_cancer_nhomalt_fin_female=87;AC_oth=444;AN_oth=6118;AF_oth=7.25727e-02;nhomalt_oth=25;non_neuro_AC_nfe_male=5257;non_neuro_AN_nfe_male=49676;non_neuro_AF_nfe_male=1.05826e-01;non_neuro_nhomalt_nfe_male=274;controls_AC_female=3523;controls_AN_female=51246;controls_AF_female=6.87468e-02;controls_nhomalt_female=183;non_cancer_AC_fin=2878;non_cancer_AN_fin=21564;non_cancer_AF_fin=1.33463e-01;non_cancer_nhomalt_fin=192;non_topmed_AC_fin=2881;non_topmed_AN_fin=21578;non_topmed_AF_fin=1.33516e-01;non_topmed_nhomalt_fin=192;non_cancer_AC_eas_oea=0;non_cancer_AN_eas_oea=13794;non_cancer_AF_eas_oea=0.00000e+00;non_cancer_nhomalt_eas_oea=0;non_topmed_AC_nfe_female=5347;non_topmed_AN_nfe_female=48694;non_topmed_AF_nfe_female=1.09808e-01;non_topmed_nhomalt_nfe_female=287;non_cancer_AC_sas_male=390;non_cancer_AN_sas_male=23026;non_cancer_AF_sas_male=1.69374e-02;non_cancer_nhomalt_sas_male=5;controls_AC_asj_male=151;controls_AN_asj_male=1106;controls_AF_asj_male=1.36528e-01;controls_nhomalt_asj_male=5;non_cancer_AC_raw=17454;non_cancer_AN_raw=236952;non_cancer_AF_raw=7.36605e-02;non_cancer_nhomalt_raw=920;non_cancer_AC_eas_male=0;non_cancer_AN_eas_male=8744;non_cancer_AF_eas_male=0.00000e+00;non_cancer_nhomalt_eas_male=0;non_topmed_AC_asj_male=679;non_topmed_AN_asj_male=5136;non_topmed_AF_asj_male=1.32204e-01;non_topmed_nhomalt_asj_male=41;non_neuro_AC_oth=326;non_neuro_AN_oth=4856;non_neuro_AF_oth=6.71334e-02;non_neuro_nhomalt_oth=16;AC_male=10108;AN_male=135678;AF_male=7.44999e-02;nhomalt_male=525;controls_AC_fin_female=842;controls_AN_fin_female=6436;controls_AF_fin_female=1.30827e-01;controls_nhomalt_fin_female=58;controls_AC_nfe_bgr=47;controls_AN_nfe_bgr=678;controls_AF_nfe_bgr=6.93215e-02;controls_nhomalt_nfe_bgr=5;controls_AC_asj_female=148;controls_AN_asj_female=1214;controls_AF_asj_female=1.21911e-01;controls_nhomalt_asj_female=8;AC_amr_male=444;AN_amr_male=14314;AF_amr_male=3.10186e-02;nhomalt_amr_male=5;AC_amr_female=570;AN_amr_female=20266;AF_amr_female=2.81259e-02;nhomalt_amr_female=5;non_topmed_AC_sas_male=391;non_topmed_AN_sas_male=23066;non_topmed_AF_sas_male=1.69514e-02;non_topmed_nhomalt_sas_male=5;AC_oth_male=230;AN_oth_male=3200;AF_oth_male=7.18750e-02;nhomalt_oth_male=14;non_cancer_AC_sas=488;non_cancer_AN_sas=30520;non_cancer_AF_sas=1.59895e-02;non_cancer_nhomalt_sas=5;non_neuro_AC_nfe_seu=722;non_neuro_AN_nfe_seu=10930;non_neuro_AF_nfe_seu=6.60567e-02;non_neuro_nhomalt_nfe_seu=27;non_cancer_AC_eas_kor=0;non_cancer_AN_eas_kor=3772;non_cancer_AF_eas_kor=0.00000e+00;non_cancer_nhomalt_eas_kor=0;non_topmed_AC_afr_female=138;non_topmed_AN_afr_female=7294;non_topmed_AF_afr_female=1.89197e-02;non_topmed_nhomalt_afr_female=0;controls_AC_sas_male=194;controls_AN_sas_male=11472;controls_AF_sas_male=1.69107e-02;controls_nhomalt_sas_male=4;non_topmed_AC_sas_female=98;non_topmed_AN_sas_female=7544;non_topmed_AF_sas_female=1.29905e-02;non_topmed_nhomalt_sas_female=0;non_topmed_AC_afr=216;non_topmed_AN_afr=11980;non_topmed_AF_afr=1.80301e-02;non_topmed_nhomalt_afr=1;controls_AC=7669;controls_AN=109316;controls_AF=7.01544e-02;controls_nhomalt=395;non_neuro_AC_oth_female=156;non_neuro_AN_oth_female=2384;non_neuro_AF_oth_female=6.54362e-02;non_neuro_nhomalt_oth_female=7;non_topmed_faf95_amr=2.78769e-02;non_topmed_faf99_amr=2.78761e-02;faf95_afr=1.74470e-02;faf99_afr=1.74462e-02;faf95_sas=1.48048e-02;faf99_sas=1.48054e-02;controls_faf95_afr=1.31569e-02;controls_faf99_afr=1.31561e-02;faf95_amr=2.78245e-02;faf99_amr=2.78245e-02;non_neuro_faf95_sas=1.48086e-02;non_neuro_faf99_sas=1.48091e-02;faf95_eas=1.89700e-05;faf99_eas=1.87100e-05;faf95=7.33687e-02;faf99=7.33685e-02;non_neuro_faf95_afr=1.73698e-02;non_neuro_faf99_afr=1.73699e-02;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=2.62377e-02;non_neuro_faf99_amr=2.62373e-02;non_topmed_faf95_sas=1.48048e-02;non_topmed_faf99_sas=1.48054e-02;controls_faf95_nfe=1.06054e-01;controls_faf99_nfe=1.06054e-01;non_cancer_faf95_afr=1.71776e-02;non_cancer_faf99_afr=1.71775e-02;non_cancer_faf95_amr=2.74972e-02;non_cancer_faf99_amr=2.74971e-02;non_topmed_faf95=7.41745e-02;non_topmed_faf99=7.41745e-02;non_neuro_faf95_nfe=1.05818e-01;non_neuro_faf99_nfe=1.05818e-01;non_neuro_faf95=6.95677e-02;non_neuro_faf99=6.95678e-02;non_topmed_faf95_nfe=1.06372e-01;non_topmed_faf99_nfe=1.06372e-01;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=1.47398e-02;controls_faf99_sas=1.47392e-02;faf95_nfe=1.05955e-01;faf99_nfe=1.05954e-01;non_topmed_faf95_eas=1.89700e-05;non_topmed_faf99_eas=1.87200e-05;controls_faf95_amr=2.57616e-02;controls_faf99_amr=2.57616e-02;non_neuro_faf95_eas=2.56000e-05;non_neuro_faf99_eas=2.61900e-05;non_cancer_faf95_nfe=1.06459e-01;non_cancer_faf99_nfe=1.06460e-01;non_cancer_faf95=7.25077e-02;non_cancer_faf99=7.25074e-02;non_cancer_faf95_sas=1.48178e-02;non_cancer_faf99_sas=1.48178e-02;non_topmed_faf95_afr=1.60601e-02;non_topmed_faf99_afr=1.60602e-02;controls_faf95=6.88418e-02;controls_faf99=6.88419e-02;popmax=nfe;AC_popmax=12203;AN_popmax=113462;AF_popmax=1.07551e-01;nhomalt_popmax=646;age_hist_het_bin_freq=538|568|947|1020|1303|1317|1252|1208|802|575;age_hist_het_n_smaller=340;age_hist_het_n_larger=336;age_hist_hom_bin_freq=24|28|31|65|67|77|76|64|53|34;age_hist_hom_n_smaller=14;age_hist_hom_n_larger=17;non_topmed_popmax=nfe;non_topmed_AC_popmax=12028;non_topmed_AN_popmax=111384;non_topmed_AF_popmax=1.07987e-01;non_topmed_nhomalt_popmax=637;non_neuro_popmax=nfe;non_neuro_AC_popmax=9628;non_neuro_AN_popmax=89466;non_neuro_AF_popmax=1.07616e-01;non_neuro_nhomalt_popmax=515;non_cancer_popmax=nfe;non_cancer_AC_popmax=11079;non_cancer_AN_popmax=102446;non_cancer_AF_popmax=1.08145e-01;non_cancer_nhomalt_popmax=597;controls_popmax=nfe;controls_AC_popmax=4646;controls_AN_popmax=42756;controls_AF_popmax=1.08663e-01;controls_nhomalt_popmax=249;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000292303.4:p.Ser185IlefsTer32|697-728|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000343985.4:p.Ser185IlefsTer32|908-939|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000404881.1:p.Ser185IlefsTer32|784-815|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC||SINGLE_EXON|GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-783&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2067_392-2036delCTGGAAATTCTTCCAGAATTGATACTGACTGT|||||||rs562091107&COSM1423390|1||-1||deletion|1|Clone_based_vega_gene||YES|||||||||||||-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||||| +3 46415066 rs146972949 C T 120238.89 PASS AC=34;AN=250848;AF=1.35540e-04;rf_tp_probability=5.71787e-01;FS=0.00000e+00;InbreedingCoeff=2.70000e-02;MQ=5.96200e+01;MQRankSum=4.44000e-01;QD=1.41100e+01;ReadPosRankSum=6.86000e-01;SOR=6.72000e-01;BaseQRankSum=1.19000e+00;ClippingRankSum=5.40000e-02;DP=7944597;VQSLOD=4.98000e+00;VQSR_culprit=FS;segdup;variant_type=snv;allele_type=snv;n_alt_alleles=1;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|33;gq_hist_all_bin_freq=75|33|37|87|171|158|463|783|639|1574|2076|1396|5239|1099|4118|1503|4855|520|4327|96594;dp_hist_alt_bin_freq=0|0|0|1|0|1|1|0|1|0|2|0|0|0|1|1|1|2|3|1;dp_hist_alt_n_larger=18;dp_hist_all_bin_freq=27|162|825|2720|6977|7997|12060|37575|33207|13569|4666|2275|1179|781|457|305|215|140|119|89;dp_hist_all_n_larger=403;ab_hist_alt_bin_freq=0|0|0|0|0|0|1|1|6|10|12|1|1|0|0|0|0|0|0|0;AC_nfe_seu=0;AN_nfe_seu=11474;AF_nfe_seu=0.00000e+00;nhomalt_nfe_seu=0;controls_AC_afr_male=2;controls_AN_afr_male=2924;controls_AF_afr_male=6.83995e-04;controls_nhomalt_afr_male=0;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3808;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=3;non_topmed_AN_amr=34382;non_topmed_AF_amr=8.72550e-05;non_topmed_nhomalt_amr=0;non_cancer_AC_asj_female=0;non_cancer_AN_asj_female=4572;non_cancer_AF_asj_female=0.00000e+00;non_cancer_nhomalt_asj_female=0;AC_raw=34;AN_raw=251494;AF_raw=1.35192e-04;nhomalt_raw=1;AC_fin_female=0;AN_fin_female=10338;AF_fin_female=0.00000e+00;nhomalt_fin_female=0;non_cancer_AC_oth_female=0;non_cancer_AN_oth_female=2676;non_cancer_AF_oth_female=0.00000e+00;non_cancer_nhomalt_oth_female=0;AC_nfe_bgr=0;AN_nfe_bgr=2668;AF_nfe_bgr=0.00000e+00;nhomalt_nfe_bgr=0;non_neuro_AC_asj_female=0;non_neuro_AN_asj_female=3068;non_neuro_AF_asj_female=0.00000e+00;non_neuro_nhomalt_asj_female=0;AC_sas_male=0;AN_sas_male=23036;AF_sas_male=0.00000e+00;nhomalt_sas_male=0;non_neuro_AC_afr_male=10;non_neuro_AN_afr_male=6164;non_neuro_AF_afr_male=1.62232e-03;non_neuro_nhomalt_afr_male=0;AC_afr_male=10;AN_afr_male=6186;AF_afr_male=1.61655e-03;nhomalt_afr_male=0;AC_afr=23;AN_afr=16252;AF_afr=1.41521e-03;nhomalt_afr=0;controls_AC_nfe_swe=2;controls_AN_nfe_swe=12802;controls_AF_nfe_swe=1.56226e-04;controls_nhomalt_nfe_swe=1;non_neuro_AC_afr_female=13;non_neuro_AN_afr_female=10050;non_neuro_AF_afr_female=1.29353e-03;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=3;non_topmed_AN_amr_female=20150;non_topmed_AF_amr_female=1.48883e-04;non_topmed_nhomalt_amr_female=0;non_cancer_AC_female=18;non_cancer_AN_female=107406;non_cancer_AF_female=1.67588e-04;non_cancer_nhomalt_female=1;non_cancer_AC_nfe_onf=2;non_cancer_AN_nfe_onf=24546;non_cancer_AF_nfe_onf=8.14797e-05;non_cancer_nhomalt_nfe_onf=0;non_cancer_AC_male=13;non_cancer_AN_male=128906;non_cancer_AF_male=1.00849e-04;non_cancer_nhomalt_male=0;non_topmed_AC_oth_female=0;non_topmed_AN_oth_female=2872;non_topmed_AF_oth_female=0.00000e+00;non_topmed_nhomalt_oth_female=0;AC_eas_female=0;AN_eas_female=9324;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=0;non_cancer_AN_sas_female=7480;non_cancer_AF_sas_female=0.00000e+00;non_cancer_nhomalt_sas_female=0;AC_afr_female=13;AN_afr_female=10066;AF_afr_female=1.29148e-03;nhomalt_afr_female=0;AC_sas=0;AN_sas=30566;AF_sas=0.00000e+00;nhomalt_sas=0;non_neuro_AC_female=20;non_neuro_AN_female=95468;non_neuro_AF_female=2.09494e-04;non_neuro_nhomalt_female=1;controls_AC_afr=9;controls_AN_afr=7164;controls_AF_afr=1.25628e-03;controls_nhomalt_afr=0;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=2;AN_nfe_onf=30878;AF_nfe_onf=6.47710e-05;nhomalt_nfe_onf=0;non_cancer_AC_amr_male=0;non_cancer_AN_amr_male=14142;non_cancer_AF_amr_male=0.00000e+00;non_cancer_nhomalt_amr_male=0;controls_AC_fin_male=0;controls_AN_fin_male=6914;controls_AF_fin_male=0.00000e+00;controls_nhomalt_fin_male=0;non_neuro_AC_nfe_nwe=3;non_neuro_AN_nfe_nwe=35264;non_neuro_AF_nfe_nwe=8.50726e-05;non_neuro_nhomalt_nfe_nwe=0;AC_fin_male=0;AN_fin_male=11252;AF_fin_male=0.00000e+00;nhomalt_fin_male=0;AC_nfe_female=4;AN_nfe_female=49998;AF_nfe_female=8.00032e-05;nhomalt_nfe_female=1;AC_amr=3;AN_amr=34516;AF_amr=8.69162e-05;nhomalt_amr=0;non_topmed_AC_nfe_male=4;non_topmed_AN_nfe_male=62676;non_topmed_AF_nfe_male=6.38203e-05;non_topmed_nhomalt_nfe_male=0;non_neuro_AC_sas=0;non_neuro_AN_sas=30558;non_neuro_AF_sas=0.00000e+00;non_neuro_nhomalt_sas=0;non_cancer_AC_fin_male=0;non_cancer_AN_fin_male=11248;non_cancer_AF_fin_male=0.00000e+00;non_cancer_nhomalt_fin_male=0;non_cancer_AC_nfe_seu=0;non_cancer_AN_nfe_seu=10582;non_cancer_AF_nfe_seu=0.00000e+00;non_cancer_nhomalt_nfe_seu=0;AC_eas=0;AN_eas=18382;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=1;non_neuro_AC_nfe_female=4;non_neuro_AN_nfe_female=39730;non_neuro_AF_nfe_female=1.00680e-04;non_neuro_nhomalt_nfe_female=1;non_neuro_AC_afr=23;non_neuro_AN_afr=16214;non_neuro_AF_afr=1.41853e-03;non_neuro_nhomalt_afr=0;controls_AC_raw=14;controls_AN_raw=109408;controls_AF_raw=1.27961e-04;controls_nhomalt_raw=1;non_cancer_AC_eas=0;non_cancer_AN_eas=17682;non_cancer_AF_eas=0.00000e+00;non_cancer_nhomalt_eas=0;non_cancer_AC_amr_female=3;non_cancer_AN_amr_female=20042;non_cancer_AF_amr_female=1.49686e-04;non_cancer_nhomalt_amr_female=0;non_neuro_AC_nfe_swe=2;non_neuro_AN_nfe_swe=14768;non_neuro_AF_nfe_swe=1.35428e-04;non_neuro_nhomalt_nfe_swe=1;controls_AC_male=3;controls_AN_male=58020;controls_AF_male=5.17063e-05;controls_nhomalt_male=0;non_topmed_AC_male=13;non_topmed_AN_male=133200;non_topmed_AF_male=9.75976e-05;non_topmed_nhomalt_male=0;controls_AC_eas_jpn=0;controls_AN_eas_jpn=114;controls_AF_eas_jpn=0.00000e+00;controls_nhomalt_eas_jpn=0;controls_AC_nfe_female=2;controls_AN_nfe_female=19108;controls_AF_nfe_female=1.04668e-04;controls_nhomalt_nfe_female=1;non_neuro_AC_amr=3;non_neuro_AN_amr=30450;non_neuro_AF_amr=9.85222e-05;non_neuro_nhomalt_amr=0;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=6840;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=0;AN_asj_male=5140;AF_asj_male=0.00000e+00;nhomalt_asj_male=0;controls_AC_nfe_male=1;controls_AN_nfe_male=23584;controls_AF_nfe_male=4.24016e-05;controls_nhomalt_nfe_male=0;non_neuro_AC_fin=0;non_neuro_AN_fin=16722;non_neuro_AF_fin=0.00000e+00;non_neuro_nhomalt_fin=0;non_topmed_AC_sas=0;non_topmed_AN_sas=30566;non_topmed_AF_sas=0.00000e+00;non_topmed_nhomalt_sas=0;non_cancer_AC_nfe_female=4;non_cancer_AN_nfe_female=44140;non_cancer_AF_nfe_female=9.06208e-05;non_cancer_nhomalt_nfe_female=1;AC_oth_female=0;AN_oth_female=2922;AF_oth_female=0.00000e+00;nhomalt_oth_female=0;non_cancer_AC_asj=0;non_cancer_AN_asj=9508;non_cancer_AF_asj=0.00000e+00;non_cancer_nhomalt_asj=0;AC_nfe_swe=2;AN_nfe_swe=26120;AF_nfe_swe=7.65697e-05;nhomalt_nfe_swe=1;controls_AC_nfe=3;controls_AN_nfe=42692;controls_AF_nfe=7.02708e-05;controls_nhomalt_nfe=1;controls_AC_oth_female=0;controls_AN_oth_female=986;controls_AF_oth_female=0.00000e+00;controls_nhomalt_oth_female=0;controls_AC_asj=0;controls_AN_asj=2302;controls_AF_asj=0.00000e+00;controls_nhomalt_asj=0;non_neuro_AC_amr_male=0;non_neuro_AN_amr_male=12228;non_neuro_AF_amr_male=0.00000e+00;non_neuro_nhomalt_amr_male=0;controls_AC_nfe_nwe=0;controls_AN_nfe_nwe=14410;controls_AF_nfe_nwe=0.00000e+00;controls_nhomalt_nfe_nwe=0;AC_nfe_nwe=4;AN_nfe_nwe=42036;AF_nfe_nwe=9.51565e-05;nhomalt_nfe_nwe=0;controls_AC_nfe_seu=0;controls_AN_nfe_seu=4758;controls_AF_nfe_seu=0.00000e+00;controls_nhomalt_nfe_seu=0;controls_AC_sas_female=0;controls_AN_sas_female=4208;controls_AF_sas_female=0.00000e+00;controls_nhomalt_sas_female=0;non_neuro_AC_amr_female=3;non_neuro_AN_amr_female=18222;non_neuro_AF_amr_female=1.64636e-04;non_neuro_nhomalt_amr_female=0;non_cancer_AC_eas_jpn=0;non_cancer_AN_eas_jpn=124;non_cancer_AF_eas_jpn=0.00000e+00;non_cancer_nhomalt_eas_jpn=0;non_neuro_AC_nfe_onf=2;non_neuro_AN_nfe_onf=27730;non_neuro_AF_nfe_onf=7.21241e-05;non_neuro_nhomalt_nfe_onf=0;non_topmed_AC_eas_male=0;non_topmed_AN_eas_male=9054;non_topmed_AF_eas_male=0.00000e+00;non_topmed_nhomalt_eas_male=0;AC_eas_jpn=0;AN_eas_jpn=152;AF_eas_jpn=0.00000e+00;nhomalt_eas_jpn=0;non_cancer_AC_afr_male=9;non_cancer_AN_afr_male=5672;non_cancer_AF_afr_male=1.58674e-03;non_cancer_nhomalt_afr_male=0;non_cancer_AC_afr=20;non_cancer_AN_afr=14898;non_cancer_AF_afr=1.34246e-03;non_cancer_nhomalt_afr=0;controls_AC_amr_female=2;controls_AN_amr_female=10196;controls_AF_amr_female=1.96155e-04;controls_nhomalt_amr_female=0;non_neuro_AC_fin_male=0;non_neuro_AN_fin_male=9078;non_neuro_AF_fin_male=0.00000e+00;non_neuro_nhomalt_fin_male=0;AC_female=20;AN_female=115280;AF_female=1.73491e-04;nhomalt_female=1;non_neuro_AC_nfe_bgr=0;non_neuro_AN_nfe_bgr=450;non_neuro_AF_nfe_bgr=0.00000e+00;non_neuro_nhomalt_nfe_bgr=0;non_neuro_AC_oth_male=0;non_neuro_AN_oth_male=2460;non_neuro_AF_oth_male=0.00000e+00;non_neuro_nhomalt_oth_male=0;non_topmed_AC_nfe_est=0;non_topmed_AN_nfe_est=238;non_topmed_AF_nfe_est=0.00000e+00;non_topmed_nhomalt_nfe_est=0;non_topmed_AC_nfe_nwe=4;non_topmed_AN_nfe_nwe=40918;non_topmed_AF_nfe_nwe=9.77565e-05;non_topmed_nhomalt_nfe_nwe=0;non_topmed_AC_amr_male=0;non_topmed_AN_amr_male=14232;non_topmed_AF_amr_male=0.00000e+00;non_topmed_nhomalt_amr_male=0;non_cancer_AC_amr=3;non_cancer_AN_amr=34184;non_cancer_AF_amr=8.77604e-05;non_cancer_nhomalt_amr=0;non_topmed_AC_nfe_swe=2;non_topmed_AN_nfe_swe=26058;non_topmed_AF_nfe_swe=7.67519e-05;non_topmed_nhomalt_nfe_swe=1;non_topmed_AC_nfe_onf=2;non_topmed_AN_nfe_onf=30078;non_topmed_AF_nfe_onf=6.64938e-05;non_topmed_nhomalt_nfe_onf=0;controls_AC_eas_kor=0;controls_AN_eas_kor=1882;controls_AF_eas_kor=0.00000e+00;controls_nhomalt_eas_kor=0;non_topmed_AC_eas_oea=0;non_topmed_AN_eas_oea=14416;non_topmed_AF_eas_oea=0.00000e+00;non_topmed_nhomalt_eas_oea=0;controls_AC_eas_male=0;controls_AN_eas_male=4254;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=0;controls_AN_oth_male=928;controls_AF_oth_male=0.00000e+00;controls_nhomalt_oth_male=0;non_topmed_AC=28;non_topmed_AN=244232;non_topmed_AF=1.14645e-04;non_topmed_nhomalt=1;controls_AC_fin=0;controls_AN_fin=13384;controls_AF_fin=0.00000e+00;controls_nhomalt_fin=0;AC_eas_kor=0;AN_eas_kor=3810;AF_eas_kor=0.00000e+00;nhomalt_eas_kor=0;non_neuro_AC_nfe=7;non_neuro_AN_nfe=89354;non_neuro_AF_nfe=7.83401e-05;non_neuro_nhomalt_nfe=1;non_neuro_AC_fin_female=0;non_neuro_AN_fin_female=7644;non_neuro_AF_fin_female=0.00000e+00;non_neuro_nhomalt_fin_female=0;non_cancer_AC_nfe_male=4;non_cancer_AN_nfe_male=58262;non_cancer_AF_nfe_male=6.86554e-05;non_cancer_nhomalt_nfe_male=0;controls_AC_eas_oea=0;controls_AN_eas_oea=7044;controls_AF_eas_oea=0.00000e+00;controls_nhomalt_eas_oea=0;non_topmed_AC_nfe_seu=0;non_topmed_AN_nfe_seu=11378;non_topmed_AF_nfe_seu=0.00000e+00;non_topmed_nhomalt_nfe_seu=0;controls_AC_eas_female=0;controls_AN_eas_female=4786;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=0;non_topmed_AN_asj=9934;non_topmed_AF_asj=0.00000e+00;non_topmed_nhomalt_asj=0;controls_AC_nfe_onf=1;controls_AN_nfe_onf=9974;controls_AF_nfe_onf=1.00261e-04;controls_nhomalt_nfe_onf=0;non_neuro_AC=33;non_neuro_AN=207724;non_neuro_AF=1.58865e-04;non_neuro_nhomalt=1;AC_eas_oea=0;AN_eas_oea=14420;AF_eas_oea=0.00000e+00;nhomalt_eas_oea=0;non_topmed_AC_nfe=8;non_topmed_AN_nfe=111330;non_topmed_AF_nfe=7.18584e-05;non_topmed_nhomalt_nfe=1;non_cancer_AC_oth=0;non_cancer_AN_oth=5588;non_cancer_AF_oth=0.00000e+00;non_cancer_nhomalt_oth=0;non_topmed_AC_raw=28;non_topmed_AN_raw=244876;non_topmed_AF_raw=1.14344e-04;non_topmed_nhomalt_raw=1;non_neuro_AC_nfe_est=0;non_neuro_AN_nfe_est=216;non_neuro_AF_nfe_est=0.00000e+00;non_neuro_nhomalt_nfe_est=0;non_topmed_AC_oth_male=0;non_topmed_AN_oth_male=3160;non_topmed_AF_oth_male=0.00000e+00;non_topmed_nhomalt_oth_male=0;non_cancer_AC_oth_male=0;non_cancer_AN_oth_male=2912;non_cancer_AF_oth_male=0.00000e+00;non_cancer_nhomalt_oth_male=0;AC_nfe_est=0;AN_nfe_est=242;AF_nfe_est=0.00000e+00;nhomalt_nfe_est=0;non_cancer_AC_afr_female=11;non_cancer_AN_afr_female=9226;non_cancer_AF_afr_female=1.19228e-03;non_cancer_nhomalt_afr_female=0;non_topmed_AC_afr_male=9;non_topmed_AN_afr_male=4686;non_topmed_AF_afr_male=1.92061e-03;non_topmed_nhomalt_afr_male=0;AC_eas_male=0;AN_eas_male=9058;AF_eas_male=0.00000e+00;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=9040;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=0;non_neuro_AN_eas_male=6566;non_neuro_AF_eas_male=0.00000e+00;non_neuro_nhomalt_eas_male=0;non_cancer_AC_nfe_nwe=4;non_cancer_AN_nfe_nwe=39316;non_cancer_AF_nfe_nwe=1.01740e-04;non_cancer_nhomalt_nfe_nwe=0;controls_AC_sas=0;controls_AN_sas=15664;controls_AF_sas=0.00000e+00;controls_nhomalt_sas=0;non_neuro_AC_sas_male=0;non_neuro_AN_sas_male=23030;non_neuro_AF_sas_male=0.00000e+00;non_neuro_nhomalt_sas_male=0;non_neuro_AC_asj_male=0;non_neuro_AN_asj_male=3106;non_neuro_AF_asj_male=0.00000e+00;non_neuro_nhomalt_asj_male=0;non_cancer_AC_nfe_bgr=0;non_cancer_AN_nfe_bgr=2524;non_cancer_AF_nfe_bgr=0.00000e+00;non_cancer_nhomalt_nfe_bgr=0;controls_AC_oth=0;controls_AN_oth=1914;controls_AF_oth=0.00000e+00;controls_nhomalt_oth=0;non_cancer_AC_eas_female=0;non_cancer_AN_eas_female=8944;non_cancer_AF_eas_female=0.00000e+00;non_cancer_nhomalt_eas_female=0;AC_nfe=8;AN_nfe=113418;AF_nfe=7.05355e-05;nhomalt_nfe=1;non_topmed_AC_female=15;non_topmed_AN_female=111032;non_topmed_AF_female=1.35096e-04;non_topmed_nhomalt_female=1;non_neuro_AC_asj=0;non_neuro_AN_asj=6174;non_neuro_AF_asj=0.00000e+00;non_neuro_nhomalt_asj=0;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=9324;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=33;non_neuro_AN_raw=208134;non_neuro_AF_raw=1.58552e-04;non_neuro_nhomalt_raw=1;non_topmed_AC_eas=0;non_topmed_AN_eas=18378;non_topmed_AF_eas=0.00000e+00;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=0;non_topmed_AN_fin_male=11252;non_topmed_AF_fin_male=0.00000e+00;non_topmed_nhomalt_fin_male=0;non_cancer_AC_asj_male=0;non_cancer_AN_asj_male=4936;non_cancer_AF_asj_male=0.00000e+00;non_cancer_nhomalt_asj_male=0;AC_fin=0;AN_fin=21590;AF_fin=0.00000e+00;nhomalt_fin=0;AC_nfe_male=4;AN_nfe_male=63420;AF_nfe_male=6.30716e-05;nhomalt_nfe_male=0;non_topmed_AC_eas_kor=0;non_topmed_AN_eas_kor=3810;non_topmed_AF_eas_kor=0.00000e+00;non_topmed_nhomalt_eas_kor=0;controls_AC_amr_male=0;controls_AN_amr_male=6866;controls_AF_amr_male=0.00000e+00;controls_nhomalt_amr_male=0;non_neuro_AC_eas_oea=0;non_neuro_AN_eas_oea=9448;non_neuro_AF_eas_oea=0.00000e+00;non_neuro_nhomalt_eas_oea=0;AC_sas_female=0;AN_sas_female=7530;AF_sas_female=0.00000e+00;nhomalt_sas_female=0;controls_AC_afr_female=7;controls_AN_afr_female=4240;controls_AF_afr_female=1.65094e-03;controls_nhomalt_afr_female=0;controls_AC_amr=2;controls_AN_amr=17062;controls_AF_amr=1.17220e-04;controls_nhomalt_amr=0;non_topmed_AC_eas_jpn=0;non_topmed_AN_eas_jpn=152;non_topmed_AF_eas_jpn=0.00000e+00;non_topmed_nhomalt_eas_jpn=0;AC_asj_female=0;AN_asj_female=4876;AF_asj_female=0.00000e+00;nhomalt_asj_female=0;non_topmed_AC_nfe_bgr=0;non_topmed_AN_nfe_bgr=2660;non_topmed_AF_nfe_bgr=0.00000e+00;non_topmed_nhomalt_nfe_bgr=0;non_cancer_AC_nfe_est=0;non_cancer_AN_nfe_est=158;non_cancer_AF_nfe_est=0.00000e+00;non_cancer_nhomalt_nfe_est=0;non_neuro_AC_eas=0;non_neuro_AN_eas=13406;non_neuro_AF_eas=0.00000e+00;non_neuro_nhomalt_eas=0;non_cancer_AC_nfe=8;non_cancer_AN_nfe=102402;non_cancer_AF_nfe=7.81235e-05;non_cancer_nhomalt_nfe=1;non_neuro_AC_male=13;non_neuro_AN_male=112256;non_neuro_AF_male=1.15807e-04;non_neuro_nhomalt_male=0;non_neuro_AC_sas_female=0;non_neuro_AN_sas_female=7528;non_neuro_AF_sas_female=0.00000e+00;non_neuro_nhomalt_sas_female=0;AC_asj=0;AN_asj=10016;AF_asj=0.00000e+00;nhomalt_asj=0;controls_AC_nfe_est=0;controls_AN_nfe_est=70;controls_AF_nfe_est=0.00000e+00;controls_nhomalt_nfe_est=0;non_topmed_AC_asj_female=0;non_topmed_AN_asj_female=4830;non_topmed_AF_asj_female=0.00000e+00;non_topmed_nhomalt_asj_female=0;non_cancer_AC_nfe_swe=2;non_cancer_AN_nfe_swe=25276;non_cancer_AF_nfe_swe=7.91264e-05;non_cancer_nhomalt_nfe_swe=1;non_cancer_AC=31;non_cancer_AN=236312;non_cancer_AF=1.31183e-04;non_cancer_nhomalt=1;non_topmed_AC_oth=0;non_topmed_AN_oth=6032;non_topmed_AF_oth=0.00000e+00;non_topmed_nhomalt_oth=0;non_topmed_AC_fin_female=0;non_topmed_AN_fin_female=10336;non_topmed_AF_fin_female=0.00000e+00;non_topmed_nhomalt_fin_female=0;non_cancer_AC_fin_female=0;non_cancer_AN_fin_female=10326;non_cancer_AF_fin_female=0.00000e+00;non_cancer_nhomalt_fin_female=0;AC_oth=0;AN_oth=6108;AF_oth=0.00000e+00;nhomalt_oth=0;non_neuro_AC_nfe_male=3;non_neuro_AN_nfe_male=49624;non_neuro_AF_nfe_male=6.04546e-05;non_neuro_nhomalt_nfe_male=0;controls_AC_female=11;controls_AN_female=51202;controls_AF_female=2.14835e-04;controls_nhomalt_female=1;non_cancer_AC_fin=0;non_cancer_AN_fin=21574;non_cancer_AF_fin=0.00000e+00;non_cancer_nhomalt_fin=0;non_topmed_AC_fin=0;non_topmed_AN_fin=21588;non_topmed_AF_fin=0.00000e+00;non_topmed_nhomalt_fin=0;non_cancer_AC_eas_oea=0;non_cancer_AN_eas_oea=13792;non_cancer_AF_eas_oea=0.00000e+00;non_cancer_nhomalt_eas_oea=0;non_topmed_AC_nfe_female=4;non_topmed_AN_nfe_female=48654;non_topmed_AF_nfe_female=8.22132e-05;non_topmed_nhomalt_nfe_female=1;non_cancer_AC_sas_male=0;non_cancer_AN_sas_male=22996;non_cancer_AF_sas_male=0.00000e+00;non_cancer_nhomalt_sas_male=0;controls_AC_asj_male=0;controls_AN_asj_male=1094;controls_AF_asj_male=0.00000e+00;controls_nhomalt_asj_male=0;non_cancer_AC_raw=31;non_cancer_AN_raw=236956;non_cancer_AF_raw=1.30826e-04;non_cancer_nhomalt_raw=1;non_cancer_AC_eas_male=0;non_cancer_AN_eas_male=8738;non_cancer_AF_eas_male=0.00000e+00;non_cancer_nhomalt_eas_male=0;non_topmed_AC_asj_male=0;non_topmed_AN_asj_male=5104;non_topmed_AF_asj_male=0.00000e+00;non_topmed_nhomalt_asj_male=0;non_neuro_AC_oth=0;non_neuro_AN_oth=4846;non_neuro_AF_oth=0.00000e+00;non_neuro_nhomalt_oth=0;AC_male=14;AN_male=135568;AF_male=1.03269e-04;nhomalt_male=0;controls_AC_fin_female=0;controls_AN_fin_female=6470;controls_AF_fin_female=0.00000e+00;controls_nhomalt_fin_female=0;controls_AC_nfe_bgr=0;controls_AN_nfe_bgr=678;controls_AF_nfe_bgr=0.00000e+00;controls_nhomalt_nfe_bgr=0;controls_AC_asj_female=0;controls_AN_asj_female=1208;controls_AF_asj_female=0.00000e+00;controls_nhomalt_asj_female=0;AC_amr_male=0;AN_amr_male=14290;AF_amr_male=0.00000e+00;nhomalt_amr_male=0;AC_amr_female=3;AN_amr_female=20226;AF_amr_female=1.48324e-04;nhomalt_amr_female=0;non_topmed_AC_sas_male=0;non_topmed_AN_sas_male=23036;non_topmed_AF_sas_male=0.00000e+00;non_topmed_nhomalt_sas_male=0;AC_oth_male=0;AN_oth_male=3186;AF_oth_male=0.00000e+00;nhomalt_oth_male=0;non_cancer_AC_sas=0;non_cancer_AN_sas=30476;non_cancer_AF_sas=0.00000e+00;non_cancer_nhomalt_sas=0;non_neuro_AC_nfe_seu=0;non_neuro_AN_nfe_seu=10926;non_neuro_AF_nfe_seu=0.00000e+00;non_neuro_nhomalt_nfe_seu=0;non_cancer_AC_eas_kor=0;non_cancer_AN_eas_kor=3766;non_cancer_AF_eas_kor=0.00000e+00;non_cancer_nhomalt_eas_kor=0;non_topmed_AC_afr_female=8;non_topmed_AN_afr_female=7336;non_topmed_AF_afr_female=1.09051e-03;non_topmed_nhomalt_afr_female=0;controls_AC_sas_male=0;controls_AN_sas_male=11456;controls_AF_sas_male=0.00000e+00;controls_nhomalt_sas_male=0;non_topmed_AC_sas_female=0;non_topmed_AN_sas_female=7530;non_topmed_AF_sas_female=0.00000e+00;non_topmed_nhomalt_sas_female=0;non_topmed_AC_afr=17;non_topmed_AN_afr=12022;non_topmed_AF_afr=1.41407e-03;non_topmed_nhomalt_afr=0;controls_AC=14;controls_AN=109222;controls_AF=1.28179e-04;controls_nhomalt=1;non_neuro_AC_oth_female=0;non_neuro_AN_oth_female=2386;non_neuro_AF_oth_female=0.00000e+00;non_neuro_nhomalt_oth_female=0;non_topmed_faf95_amr=2.31200e-05;non_topmed_faf99_amr=2.34100e-05;faf95_afr=9.66830e-04;faf99_afr=9.67200e-04;faf95_sas=0.00000e+00;faf99_sas=0.00000e+00;controls_faf95_afr=6.54730e-04;controls_faf99_afr=6.54620e-04;faf95_amr=2.30300e-05;faf99_amr=2.33800e-05;non_neuro_faf95_sas=0.00000e+00;non_neuro_faf99_sas=0.00000e+00;faf95_eas=0.00000e+00;faf99_eas=0.00000e+00;faf95=9.94300e-05;faf99=9.89300e-05;non_neuro_faf95_afr=9.69030e-04;non_neuro_faf99_afr=9.69050e-04;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=2.61000e-05;non_neuro_faf99_amr=2.62300e-05;non_topmed_faf95_sas=0.00000e+00;non_topmed_faf99_sas=0.00000e+00;controls_faf95_nfe=1.86300e-05;controls_faf99_nfe=1.81600e-05;non_cancer_faf95_afr=8.89330e-04;non_cancer_faf99_afr=8.89190e-04;non_cancer_faf95_amr=2.32600e-05;non_cancer_faf99_amr=2.34400e-05;non_topmed_faf95=8.13900e-05;non_topmed_faf99=8.13100e-05;non_neuro_faf95_nfe=3.64900e-05;non_neuro_faf99_nfe=3.58700e-05;non_neuro_faf95=1.15840e-04;non_neuro_faf99=1.15450e-04;non_topmed_faf95_nfe=3.48400e-05;non_topmed_faf99_nfe=3.52700e-05;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=0.00000e+00;controls_faf99_sas=0.00000e+00;faf95_nfe=3.42700e-05;faf99_nfe=3.48600e-05;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=2.03600e-05;controls_faf99_amr=2.02400e-05;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_cancer_faf95_nfe=3.85200e-05;non_cancer_faf99_nfe=3.82000e-05;non_cancer_faf95=9.48900e-05;non_cancer_faf99=9.47500e-05;non_cancer_faf95_sas=0.00000e+00;non_cancer_faf99_sas=0.00000e+00;non_topmed_faf95_afr=9.00250e-04;non_topmed_faf99_afr=9.00830e-04;controls_faf95=7.72000e-05;controls_faf99=7.69900e-05;popmax=afr;AC_popmax=23;AN_popmax=16252;AF_popmax=1.41521e-03;nhomalt_popmax=0;age_hist_het_bin_freq=2|0|2|3|5|4|1|3|3|1;age_hist_het_n_smaller=3;age_hist_het_n_larger=0;age_hist_hom_bin_freq=0|0|0|0|0|0|1|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;non_topmed_popmax=afr;non_topmed_AC_popmax=17;non_topmed_AN_popmax=12022;non_topmed_AF_popmax=1.41407e-03;non_topmed_nhomalt_popmax=0;non_neuro_popmax=afr;non_neuro_AC_popmax=23;non_neuro_AN_popmax=16214;non_neuro_AF_popmax=1.41853e-03;non_neuro_nhomalt_popmax=0;non_cancer_popmax=afr;non_cancer_AC_popmax=20;non_cancer_AN_popmax=14898;non_cancer_AF_popmax=1.34246e-03;non_cancer_nhomalt_popmax=0;controls_popmax=afr;controls_AC_popmax=9;controls_AN_popmax=7164;controls_AF_popmax=1.25628e-03;controls_nhomalt_popmax=0;vep=T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.673C>T|ENSP00000292303.4:p.Arg225Ter|819|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC|||GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-683&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.673C>T|ENSP00000343985.4:p.Arg225Ter|1030|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC|||GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-683&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.673C>T|ENSP00000404881.1:p.Arg225Ter|906|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC||SINGLE_EXON|GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-905&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2158G>A|||||||CM104769&rs146972949&COSM3781819|1||-1||SNV|1|Clone_based_vega_gene||YES|||||||||||||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||||| +3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 1947603.90 PASS AC=2427;AN=31348;AF=7.74212e-02;rf_tp_probability=9.53514e-01;FS=0.00000e+00;InbreedingCoeff=6.00000e-03;MQ=6.03900e+01;MQRankSum=4.52000e-01;QD=1.69200e+01;ReadPosRankSum=-2.90000e-02;SOR=6.82000e-01;VQSR_POSITIVE_TRAIN_SITE;BaseQRankSum=3.50000e-01;ClippingRankSum=-2.60000e-02;DP=651449;VQSLOD=8.95000e-01;VQSR_culprit=MQRankSum;segdup;rf_positive_label;rf_label=TP;rf_train;variant_type=indel;allele_type=del;n_alt_alleles=1;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|2|0|0|1|1|0|0|2|1|1|4|2|8|10|10|6|10|13|2273;gq_hist_all_bin_freq=0|4|2|7|11|13|42|105|122|293|508|378|1311|490|1227|629|1675|339|1590|6962;dp_hist_alt_bin_freq=0|1|7|103|272|429|467|464|288|169|81|42|9|2|5|1|1|0|0|1;dp_hist_alt_n_larger=2;dp_hist_all_bin_freq=0|6|133|855|2413|3283|3682|4026|918|231|85|47|12|5|7|1|1|0|0|1;dp_hist_all_n_larger=2;ab_hist_alt_bin_freq=0|0|3|13|33|112|269|379|528|329|325|143|68|17|3|0|1|3|4|11;AC_nfe_seu=4;AN_nfe_seu=106;AF_nfe_seu=3.77358e-02;nhomalt_nfe_seu=0;controls_AC_afr_male=26;controls_AN_afr_male=1408;controls_AF_afr_male=1.84659e-02;controls_nhomalt_afr_male=0;non_topmed_AC_amr=22;non_topmed_AN_amr=810;non_topmed_AF_amr=2.71605e-02;non_topmed_nhomalt_amr=1;AC_raw=2447;AN_raw=31416;AF_raw=7.78902e-02;nhomalt_raw=103;AC_fin_female=271;AN_fin_female=1838;AF_fin_female=1.47443e-01;nhomalt_fin_female=20;non_neuro_AC_asj_female=5;non_neuro_AN_asj_female=60;non_neuro_AF_asj_female=8.33333e-02;non_neuro_nhomalt_asj_female=0;non_neuro_AC_afr_male=26;non_neuro_AN_afr_male=1608;non_neuro_AF_afr_male=1.61692e-02;non_neuro_nhomalt_afr_male=0;AC_afr_male=101;AN_afr_male=5026;AF_afr_male=2.00955e-02;nhomalt_afr_male=1;AC_afr=168;AN_afr=8706;AF_afr=1.92970e-02;nhomalt_afr=1;non_neuro_AC_afr_female=29;non_neuro_AN_afr_female=1780;non_neuro_AF_afr_female=1.62921e-02;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=8;non_topmed_AN_amr_female=394;non_topmed_AF_amr_female=2.03046e-02;non_topmed_nhomalt_amr_female=0;non_topmed_AC_oth_female=53;non_topmed_AN_oth_female=546;non_topmed_AF_oth_female=9.70696e-02;non_topmed_nhomalt_oth_female=3;AC_eas_female=0;AN_eas_female=538;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;AC_afr_female=67;AN_afr_female=3680;AF_afr_female=1.82065e-02;nhomalt_afr_female=0;non_neuro_AC_female=807;non_neuro_AN_female=9576;non_neuro_AF_female=8.42732e-02;non_neuro_nhomalt_female=31;controls_AC_afr=45;controls_AN_afr=2574;controls_AF_afr=1.74825e-02;controls_nhomalt_afr=0;AC_nfe_onf=190;AN_nfe_onf=2136;AF_nfe_onf=8.89513e-02;nhomalt_nfe_onf=8;controls_AC_fin_male=74;controls_AN_fin_male=606;controls_AF_fin_male=1.22112e-01;controls_nhomalt_fin_male=6;non_neuro_AC_nfe_nwe=800;non_neuro_AN_nfe_nwe=7682;non_neuro_AF_nfe_nwe=1.04140e-01;non_neuro_nhomalt_nfe_nwe=21;AC_fin_male=207;AN_fin_male=1630;AF_fin_male=1.26994e-01;nhomalt_fin_male=16;AC_nfe_female=730;AN_nfe_female=6792;AF_nfe_female=1.07479e-01;nhomalt_nfe_female=27;AC_amr=23;AN_amr=848;AF_amr=2.71226e-02;nhomalt_amr=1;non_topmed_AC_nfe_male=572;non_topmed_AN_nfe_male=5458;non_topmed_AF_nfe_male=1.04800e-01;non_topmed_nhomalt_nfe_male=23;AC_eas=0;AN_eas=1558;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=102;non_neuro_AC_nfe_female=641;non_neuro_AN_nfe_female=5970;non_neuro_AF_nfe_female=1.07370e-01;non_neuro_nhomalt_nfe_female=22;non_neuro_AC_afr=55;non_neuro_AN_afr=3388;non_neuro_AF_afr=1.62338e-02;non_neuro_nhomalt_afr=0;controls_AC_raw=885;controls_AN_raw=10884;controls_AF_raw=8.13120e-02;controls_nhomalt_raw=41;controls_AC_male=464;controls_AN_male=5854;controls_AF_male=7.92620e-02;controls_nhomalt_male=24;non_topmed_AC_male=946;non_topmed_AN_male=13976;non_topmed_AF_male=6.76875e-02;non_topmed_nhomalt_male=43;controls_AC_nfe_female=281;controls_AN_nfe_female=2572;controls_AF_nfe_female=1.09253e-01;controls_nhomalt_nfe_female=9;non_neuro_AC_amr=15;non_neuro_AN_amr=554;non_neuro_AF_amr=2.70758e-02;non_neuro_nhomalt_amr=0;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=538;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=30;AN_asj_male=210;AF_asj_male=1.42857e-01;nhomalt_asj_male=2;controls_AC_nfe_male=332;controls_AN_nfe_male=2932;controls_AF_nfe_male=1.13233e-01;controls_nhomalt_nfe_male=16;non_neuro_AC_fin=163;non_neuro_AN_fin=1160;non_neuro_AF_fin=1.40517e-01;non_neuro_nhomalt_fin=13;AC_oth_female=56;AN_oth_female=562;AF_oth_female=9.96441e-02;nhomalt_oth_female=3;controls_AC_nfe=613;controls_AN_nfe=5504;controls_AF_nfe=1.11374e-01;controls_nhomalt_nfe=25;controls_AC_oth_female=23;controls_AN_oth_female=226;controls_AF_oth_female=1.01770e-01;controls_nhomalt_oth_female=2;controls_AC_asj=3;controls_AN_asj=38;controls_AF_asj=7.89474e-02;controls_nhomalt_asj=0;non_neuro_AC_amr_male=7;non_neuro_AN_amr_male=244;non_neuro_AF_amr_male=2.86885e-02;non_neuro_nhomalt_amr_male=0;controls_AC_nfe_nwe=88;controls_AN_nfe_nwe=922;controls_AF_nfe_nwe=9.54447e-02;controls_nhomalt_nfe_nwe=1;AC_nfe_nwe=891;AN_nfe_nwe=8576;AF_nfe_nwe=1.03895e-01;nhomalt_nfe_nwe=24;controls_AC_nfe_seu=2;controls_AN_nfe_seu=56;controls_AF_nfe_seu=3.57143e-02;controls_nhomalt_nfe_seu=0;non_neuro_AC_amr_female=8;non_neuro_AN_amr_female=310;non_neuro_AF_amr_female=2.58065e-02;non_neuro_nhomalt_amr_female=0;non_neuro_AC_nfe_onf=156;non_neuro_AN_nfe_onf=1722;non_neuro_AF_nfe_onf=9.05923e-02;non_neuro_nhomalt_nfe_onf=6;non_topmed_AC_eas_male=0;non_topmed_AN_eas_male=1000;non_topmed_AF_eas_male=0.00000e+00;non_topmed_nhomalt_eas_male=0;controls_AC_amr_female=3;controls_AN_amr_female=120;controls_AF_amr_female=2.50000e-02;controls_nhomalt_amr_female=0;non_neuro_AC_fin_male=74;non_neuro_AN_fin_male=606;non_neuro_AF_fin_male=1.22112e-01;non_neuro_nhomalt_fin_male=6;AC_female=1138;AN_female=13904;AF_female=8.18470e-02;nhomalt_female=50;non_neuro_AC_oth_male=36;non_neuro_AN_oth_male=368;non_neuro_AF_oth_male=9.78261e-02;non_neuro_nhomalt_oth_male=2;non_topmed_AC_nfe_est=533;non_topmed_AN_nfe_est=4552;non_topmed_AF_nfe_est=1.17091e-01;non_topmed_nhomalt_nfe_est=25;non_topmed_AC_nfe_nwe=521;non_topmed_AN_nfe_nwe=4884;non_topmed_AF_nfe_nwe=1.06675e-01;non_topmed_nhomalt_nfe_nwe=14;non_topmed_AC_amr_male=14;non_topmed_AN_amr_male=416;non_topmed_AF_amr_male=3.36538e-02;non_topmed_nhomalt_amr_male=1;non_topmed_AC_nfe_onf=132;non_topmed_AN_nfe_onf=1514;non_topmed_AF_nfe_onf=8.71863e-02;non_topmed_nhomalt_nfe_onf=7;controls_AC_eas_male=0;controls_AN_eas_male=572;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=26;controls_AN_oth_male=196;controls_AF_oth_male=1.32653e-01;controls_nhomalt_oth_male=2;non_topmed_AC=1966;non_topmed_AN=26546;non_topmed_AF=7.40601e-02;non_topmed_nhomalt=89;controls_AC_fin=161;controls_AN_fin=1158;controls_AF_fin=1.39033e-01;controls_nhomalt_fin=12;non_neuro_AC_nfe=1440;non_neuro_AN_nfe=13586;non_neuro_AF_nfe=1.05991e-01;non_neuro_nhomalt_nfe=49;non_neuro_AC_fin_female=89;non_neuro_AN_fin_female=554;non_neuro_AF_fin_female=1.60650e-01;non_neuro_nhomalt_fin_female=7;non_topmed_AC_nfe_seu=4;non_topmed_AN_nfe_seu=106;non_topmed_AF_nfe_seu=3.77358e-02;non_topmed_nhomalt_nfe_seu=0;controls_AC_eas_female=0;controls_AN_eas_female=342;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=15;non_topmed_AN_asj=138;non_topmed_AF_asj=1.08696e-01;non_topmed_nhomalt_asj=0;controls_AC_nfe_onf=46;controls_AN_nfe_onf=440;controls_AF_nfe_onf=1.04545e-01;controls_nhomalt_nfe_onf=2;non_neuro_AC=1774;non_neuro_AN=21224;non_neuro_AF=8.35846e-02;non_neuro_nhomalt=68;non_topmed_AC_nfe=1190;non_topmed_AN_nfe=11056;non_topmed_AF_nfe=1.07634e-01;non_topmed_nhomalt_nfe=46;non_topmed_AC_raw=1983;non_topmed_AN_raw=26608;non_topmed_AF_raw=7.45265e-02;non_topmed_nhomalt_raw=90;non_neuro_AC_nfe_est=482;non_neuro_AN_nfe_est=4128;non_neuro_AF_nfe_est=1.16764e-01;non_neuro_nhomalt_nfe_est=22;non_topmed_AC_oth_male=41;non_topmed_AN_oth_male=464;non_topmed_AF_oth_male=8.83621e-02;non_topmed_nhomalt_oth_male=2;AC_nfe_est=536;AN_nfe_est=4574;AF_nfe_est=1.17184e-01;nhomalt_nfe_est=25;non_topmed_AC_afr_male=100;non_topmed_AN_afr_male=4932;non_topmed_AF_afr_male=2.02758e-02;non_topmed_nhomalt_afr_male=1;AC_eas_male=0;AN_eas_male=1020;AF_eas_male=0.00000e+00;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=914;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=0;non_neuro_AN_eas_male=1020;non_neuro_AF_eas_male=0.00000e+00;non_neuro_nhomalt_eas_male=0;non_neuro_AC_asj_male=25;non_neuro_AN_asj_male=186;non_neuro_AF_asj_male=1.34409e-01;non_neuro_nhomalt_asj_male=2;controls_AC_oth=49;controls_AN_oth=422;controls_AF_oth=1.16114e-01;controls_nhomalt_oth=4;AC_nfe=1621;AN_nfe=15392;AF_nfe=1.05314e-01;nhomalt_nfe=57;non_topmed_AC_female=1020;non_topmed_AN_female=12570;non_topmed_AF_female=8.11456e-02;non_topmed_nhomalt_female=46;non_neuro_AC_asj=30;non_neuro_AN_asj=246;non_neuro_AF_asj=1.21951e-01;non_neuro_nhomalt_asj=2;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=520;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=1791;non_neuro_AN_raw=21272;non_neuro_AF_raw=8.41952e-02;non_neuro_nhomalt_raw=69;non_topmed_AC_eas=0;non_topmed_AN_eas=1520;non_topmed_AF_eas=0.00000e+00;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=207;non_topmed_AN_fin_male=1630;non_topmed_AF_fin_male=1.26994e-01;non_topmed_nhomalt_fin_male=16;AC_fin=478;AN_fin=3468;AF_fin=1.37832e-01;nhomalt_fin=36;AC_nfe_male=891;AN_nfe_male=8600;AF_nfe_male=1.03605e-01;nhomalt_nfe_male=30;controls_AC_amr_male=4;controls_AN_amr_male=126;controls_AF_amr_male=3.17460e-02;controls_nhomalt_amr_male=0;controls_AC_afr_female=19;controls_AN_afr_female=1166;controls_AF_afr_female=1.62950e-02;controls_nhomalt_afr_female=0;controls_AC_amr=7;controls_AN_amr=246;controls_AF_amr=2.84553e-02;controls_nhomalt_amr=0;AC_asj_female=5;AN_asj_female=80;AF_asj_female=6.25000e-02;nhomalt_asj_female=0;non_neuro_AC_eas=0;non_neuro_AN_eas=1558;non_neuro_AF_eas=0.00000e+00;non_neuro_nhomalt_eas=0;non_neuro_AC_male=967;non_neuro_AN_male=11648;non_neuro_AF_male=8.30185e-02;non_neuro_nhomalt_male=37;AC_asj=35;AN_asj=290;AF_asj=1.20690e-01;nhomalt_asj=2;controls_AC_nfe_est=477;controls_AN_nfe_est=4086;controls_AF_nfe_est=1.16740e-01;controls_nhomalt_nfe_est=22;non_topmed_AC_asj_female=3;non_topmed_AN_asj_female=62;non_topmed_AF_asj_female=4.83871e-02;non_topmed_nhomalt_asj_female=0;non_topmed_AC_oth=94;non_topmed_AN_oth=1010;non_topmed_AF_oth=9.30693e-02;non_topmed_nhomalt_oth=5;non_topmed_AC_fin_female=271;non_topmed_AN_fin_female=1838;non_topmed_AF_fin_female=1.47443e-01;non_topmed_nhomalt_fin_female=20;AC_oth=102;AN_oth=1086;AF_oth=9.39227e-02;nhomalt_oth=5;non_neuro_AC_nfe_male=799;non_neuro_AN_nfe_male=7616;non_neuro_AF_nfe_male=1.04911e-01;non_neuro_nhomalt_nfe_male=27;controls_AC_female=414;controls_AN_female=5002;controls_AF_female=8.27669e-02;controls_nhomalt_female=17;non_topmed_AC_fin=478;non_topmed_AN_fin=3468;non_topmed_AF_fin=1.37832e-01;non_topmed_nhomalt_fin=36;non_topmed_AC_nfe_female=618;non_topmed_AN_nfe_female=5598;non_topmed_AF_nfe_female=1.10397e-01;non_topmed_nhomalt_nfe_female=23;controls_AC_asj_male=2;controls_AN_asj_male=14;controls_AF_asj_male=1.42857e-01;controls_nhomalt_asj_male=0;non_topmed_AC_asj_male=12;non_topmed_AN_asj_male=76;non_topmed_AF_asj_male=1.57895e-01;non_topmed_nhomalt_asj_male=0;non_neuro_AC_oth=71;non_neuro_AN_oth=732;non_neuro_AF_oth=9.69945e-02;non_neuro_nhomalt_oth=4;AC_male=1289;AN_male=17444;AF_male=7.38936e-02;nhomalt_male=52;controls_AC_fin_female=87;controls_AN_fin_female=552;controls_AF_fin_female=1.57609e-01;controls_nhomalt_fin_female=6;controls_AC_asj_female=1;controls_AN_asj_female=24;controls_AF_asj_female=4.16667e-02;controls_nhomalt_asj_female=0;AC_amr_male=14;AN_amr_male=434;AF_amr_male=3.22581e-02;nhomalt_amr_male=1;AC_amr_female=9;AN_amr_female=414;AF_amr_female=2.17391e-02;nhomalt_amr_female=0;AC_oth_male=46;AN_oth_male=524;AF_oth_male=8.77863e-02;nhomalt_oth_male=2;non_neuro_AC_nfe_seu=2;non_neuro_AN_nfe_seu=54;non_neuro_AF_nfe_seu=3.70370e-02;non_neuro_nhomalt_nfe_seu=0;non_topmed_AC_afr_female=67;non_topmed_AN_afr_female=3612;non_topmed_AF_afr_female=1.85493e-02;non_topmed_nhomalt_afr_female=0;non_topmed_AC_afr=167;non_topmed_AN_afr=8544;non_topmed_AF_afr=1.95459e-02;non_topmed_nhomalt_afr=1;controls_AC=878;controls_AN=10856;controls_AF=8.08769e-02;controls_nhomalt=41;non_neuro_AC_oth_female=35;non_neuro_AN_oth_female=364;non_neuro_AF_oth_female=9.61538e-02;non_neuro_nhomalt_oth_female=2;non_topmed_faf95_amr=1.83865e-02;non_topmed_faf99_amr=1.83872e-02;faf95_afr=1.69148e-02;faf99_afr=1.69145e-02;controls_faf95_afr=1.34271e-02;controls_faf99_afr=1.34270e-02;faf95_amr=1.85367e-02;faf99_amr=1.85368e-02;faf95_eas=0.00000e+00;faf99_eas=0.00000e+00;faf95=7.48535e-02;faf99=7.48541e-02;non_neuro_faf95_afr=1.28081e-02;non_neuro_faf99_afr=1.28087e-02;non_neuro_faf95_amr=1.66897e-02;non_neuro_faf99_amr=1.66898e-02;controls_faf95_nfe=1.04079e-01;controls_faf99_nfe=1.04079e-01;non_topmed_faf95=7.13334e-02;non_topmed_faf99=7.13338e-02;non_neuro_faf95_nfe=1.01439e-01;non_neuro_faf99_nfe=1.01439e-01;non_neuro_faf95=8.03470e-02;non_neuro_faf99=8.03471e-02;non_topmed_faf95_nfe=1.02553e-01;non_topmed_faf99_nfe=1.02553e-01;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;faf95_nfe=1.01049e-01;faf99_nfe=1.01049e-01;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=1.33541e-02;controls_faf99_amr=1.33544e-02;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_topmed_faf95_afr=1.71260e-02;non_topmed_faf99_afr=1.71258e-02;controls_faf95=7.64398e-02;controls_faf99=7.64402e-02;controls_popmax=nfe;controls_AC_popmax=613;controls_AN_popmax=5504;controls_AF_popmax=1.11374e-01;controls_nhomalt_popmax=25;popmax=nfe;AC_popmax=1621;AN_popmax=15392;AF_popmax=1.05314e-01;nhomalt_popmax=57;age_hist_het_bin_freq=105|106|166|234|289|221|173|108|56|15;age_hist_het_n_smaller=251;age_hist_het_n_larger=7;age_hist_hom_bin_freq=3|3|5|12|10|10|8|8|4|0;age_hist_hom_n_smaller=12;age_hist_hom_n_larger=1;non_neuro_popmax=nfe;non_neuro_AC_popmax=1440;non_neuro_AN_popmax=13586;non_neuro_AF_popmax=1.05991e-01;non_neuro_nhomalt_popmax=49;non_topmed_popmax=nfe;non_topmed_AC_popmax=1190;non_topmed_AN_popmax=11056;non_topmed_AF_popmax=1.07634e-01;non_topmed_nhomalt_popmax=46;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000292303.4:p.Ser185IlefsTer32|697-728|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000343985.4:p.Ser185IlefsTer32|908-939|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000404881.1:p.Ser185IlefsTer32|784-815|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC||SINGLE_EXON|GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-783&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2067_392-2036delCTGGAAATTCTTCCAGAATTGATACTGACTGT|||||||rs562091107&COSM1423390|1||-1||deletion|1|Clone_based_vega_gene||YES|||||||||||||-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1|||||||||
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gnomadv2_results/Nonessential_Host_Genes_Basic.txt Thu Jul 29 19:17:40 2021 +0000 @@ -0,0 +1,2 @@ +HGNC_Symbol Status +CCR5 HC LoF found
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gnomadv2_results/Nonessential_Host_Genes_Detailed.txt Thu Jul 29 19:17:40 2021 +0000 @@ -0,0 +1,13 @@ +Chromosome Position_Start RSID Reference_Allele Alternate_Allele Score Quality LoF_Variant LoF_Annotation HGNC_Symbol Ensembl Code HGVSc african-AC african-AN african-AF ashkenazi-jewish-AC ashkenazi-jewish-AN ashkenazi-jewish-AF european-non-finnish-AC european-non-finnish-AN european-non-finnish-AF finnish-AC finnish-AN finnish-AF south-asian-AC south-asian-AN south-asian-AF latino-AC latino-AN latino-AF east-asian-AC east-asian-AN east-asian-AF other-AC other-AF other-AN male-AC male-AF male-AN female-AC female-AN female-AF +3 46414935 rs938517991 AT A 9974.16 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000292303.4:c.546delT 0 16192 0.0000000000e+00 0 10066 0.0000000000e+00 2 113380 1.7639800000e-05 0 21600 0.0000000000e+00 0 30616 0.0000000000e+00 0 34578 0.0000000000e+00 0 18394 0.0000000000e+00 0 0.0000000000e+00 6120 0 0.0000000000e+00 135678 2 115268 1.7350900000e-05 +3 46414935 rs938517991 AT A 9974.16 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000343801.4:c.546delT 0 16192 0.0000000000e+00 0 10066 0.0000000000e+00 2 113380 1.7639800000e-05 0 21600 0.0000000000e+00 0 30616 0.0000000000e+00 0 34578 0.0000000000e+00 0 18394 0.0000000000e+00 0 0.0000000000e+00 6120 0 0.0000000000e+00 135678 2 115268 1.7350900000e-05 +3 46414935 rs938517991 AT A 9974.16 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000445772.1:c.546delT 0 16192 0.0000000000e+00 0 10066 0.0000000000e+00 2 113380 1.7639800000e-05 0 21600 0.0000000000e+00 0 30616 0.0000000000e+00 0 34578 0.0000000000e+00 0 18394 0.0000000000e+00 0 0.0000000000e+00 6120 0 0.0000000000e+00 135678 2 115268 1.7350900000e-05 +3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 74264261.52 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA 311 16196 1.9202300000e-02 1296 10068 1.2872500000e-01 12203 113462 1.0755100000e-01 2881 21580 1.3350300000e-01 489 30610 1.5975200000e-02 1014 34580 2.9323300000e-02 2 18392 1.0874300000e-04 444 7.2572700000e-02 6118 10108 7.4499900000e-02 135678 8532 115328 7.3980300000e-02 +3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 74264261.52 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA 311 16196 1.9202300000e-02 1296 10068 1.2872500000e-01 12203 113462 1.0755100000e-01 2881 21580 1.3350300000e-01 489 30610 1.5975200000e-02 1014 34580 2.9323300000e-02 2 18392 1.0874300000e-04 444 7.2572700000e-02 6118 10108 7.4499900000e-02 135678 8532 115328 7.3980300000e-02 +3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 74264261.52 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA 311 16196 1.9202300000e-02 1296 10068 1.2872500000e-01 12203 113462 1.0755100000e-01 2881 21580 1.3350300000e-01 489 30610 1.5975200000e-02 1014 34580 2.9323300000e-02 2 18392 1.0874300000e-04 444 7.2572700000e-02 6118 10108 7.4499900000e-02 135678 8532 115328 7.3980300000e-02 +3 46415066 rs146972949 C T 120238.89 PASS T stop_gained CCR5 ENSG00000160791 ENST00000292303.4:c.673C>T 23 16252 1.4152100000e-03 0 10016 0.0000000000e+00 8 113418 7.0535500000e-05 0 21590 0.0000000000e+00 0 30566 0.0000000000e+00 3 34516 8.6916200000e-05 0 18382 0.0000000000e+00 0 0.0000000000e+00 6108 14 1.0326900000e-04 135568 20 115280 1.7349100000e-04 +3 46415066 rs146972949 C T 120238.89 PASS T stop_gained CCR5 ENSG00000160791 ENST00000343801.4:c.673C>T 23 16252 1.4152100000e-03 0 10016 0.0000000000e+00 8 113418 7.0535500000e-05 0 21590 0.0000000000e+00 0 30566 0.0000000000e+00 3 34516 8.6916200000e-05 0 18382 0.0000000000e+00 0 0.0000000000e+00 6108 14 1.0326900000e-04 135568 20 115280 1.7349100000e-04 +3 46415066 rs146972949 C T 120238.89 PASS T stop_gained CCR5 ENSG00000160791 ENST00000445772.1:c.673C>T 23 16252 1.4152100000e-03 0 10016 0.0000000000e+00 8 113418 7.0535500000e-05 0 21590 0.0000000000e+00 0 30566 0.0000000000e+00 3 34516 8.6916200000e-05 0 18382 0.0000000000e+00 0 0.0000000000e+00 6108 14 1.0326900000e-04 135568 20 115280 1.7349100000e-04 +3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 1947603.90 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA 168 8706 1.9297000000e-02 35 290 1.2069000000e-01 1621 15392 1.0531400000e-01 478 3468 1.3783200000e-01 - - - 23 848 2.7122600000e-02 0 1558 0.0000000000e+00 102 9.3922700000e-02 1086 1289 7.3893600000e-02 17444 1138 13904 8.1847000000e-02 +3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 1947603.90 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA 168 8706 1.9297000000e-02 35 290 1.2069000000e-01 1621 15392 1.0531400000e-01 478 3468 1.3783200000e-01 - - - 23 848 2.7122600000e-02 0 1558 0.0000000000e+00 102 9.3922700000e-02 1086 1289 7.3893600000e-02 17444 1138 13904 8.1847000000e-02 +3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 1947603.90 PASS - frameshift_variant CCR5 ENSG00000160791 ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA 168 8706 1.9297000000e-02 35 290 1.2069000000e-01 1621 15392 1.0531400000e-01 478 3468 1.3783200000e-01 - - - 23 848 2.7122600000e-02 0 1558 0.0000000000e+00 102 9.3922700000e-02 1086 1289 7.3893600000e-02 17444 1138 13904 8.1847000000e-02
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gnomadv3_input.txt Thu Jul 29 19:17:40 2021 +0000 @@ -0,0 +1,1 @@ +COL6A5
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gnomadv3_results/Nonessential_Gene_Variants.vcf Thu Jul 29 19:17:40 2021 +0000 @@ -0,0 +1,950 @@ +##fileformat=VCFv4.2 +##hailversion=0.2.64-1ef70187dc78 +##FILTER=<ID=AC0,Description="Allele count is zero after filtering out low-confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls)"> +##FILTER=<ID=AS_VQSR,Description="Failed VQSR filtering thresholds of -2.7739 for SNPs and -1.0606 for indels (probabilities of being a true positive variant)"> +##FILTER=<ID=InbreedingCoeff,Description="GATK InbreedingCoeff < -0.3"> +##FILTER=<ID=PASS,Description="Passed all variant filters"> +##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate allele count"> +##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles"> +##INFO=<ID=AF,Number=A,Type=Float,Description="Alternate allele frequency"> +##INFO=<ID=popmax,Number=A,Type=String,Description="Population with maximum AF"> +##INFO=<ID=faf95_popmax,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for the population with the maximum allele frequency"> +##INFO=<ID=AC_non_v2_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples in non_v2 subset"> +##INFO=<ID=AN_non_v2_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples in non_v2 subset"> +##INFO=<ID=AF_non_v2_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples in non_v2 subset"> +##INFO=<ID=AC_non_cancer_fin_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_fin_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_fin_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_fin_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AC_non_neuro_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AC_non_neuro_afr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_afr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_afr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_afr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AC_non_neuro_nfe_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_nfe_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_nfe_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_nfe_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AC_controls_and_biobanks_eas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_eas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_eas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_eas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_neuro_sas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_sas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_sas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_sas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AC_non_v2,Number=A,Type=Integer,Description="Alternate allele count in non_v2 subset"> +##INFO=<ID=AN_non_v2,Number=1,Type=Integer,Description="Total number of alleles in non_v2 subset"> +##INFO=<ID=AF_non_v2,Number=A,Type=Float,Description="Alternate allele frequency in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2,Number=A,Type=Integer,Description="Count of homozygous individuals in non_v2 subset"> +##INFO=<ID=AC_non_topmed_nfe_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_nfe_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_nfe_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_nfe_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AC_non_v2_mid,Number=A,Type=Integer,Description="Alternate allele count for samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_mid,Number=1,Type=Integer,Description="Total number of alleles in samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_mid,Number=A,Type=Float,Description="Alternate allele frequency in samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_mid,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AC_non_topmed_sas,Number=A,Type=Integer,Description="Alternate allele count for samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_sas,Number=1,Type=Integer,Description="Total number of alleles in samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_sas,Number=A,Type=Float,Description="Alternate allele frequency in samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_sas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AC_non_cancer_eas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_eas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_eas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_eas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AC_amr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Latino ancestry"> +##INFO=<ID=AN_amr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Latino ancestry"> +##INFO=<ID=AF_amr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Latino ancestry"> +##INFO=<ID=nhomalt_amr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Latino ancestry"> +##INFO=<ID=AC_non_v2_nfe_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_nfe_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_nfe_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_nfe_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AC_controls_and_biobanks_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples in controls_and_biobanks subset"> +##INFO=<ID=AC_non_neuro_asj_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_asj_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_asj_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_asj_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry"> +##INFO=<ID=AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry"> +##INFO=<ID=AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry"> +##INFO=<ID=nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry"> +##INFO=<ID=AC_non_topmed_mid_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_mid_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_mid_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_mid_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AC_non_cancer_asj_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_asj_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_asj_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_asj_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AC_sas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of South Asian ancestry"> +##INFO=<ID=AN_sas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of South Asian ancestry"> +##INFO=<ID=AF_sas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of South Asian ancestry"> +##INFO=<ID=nhomalt_sas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of South Asian ancestry"> +##INFO=<ID=AC_non_neuro_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AC_non_topmed_amr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_amr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_amr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_amr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AC_non_neuro_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples in non_neuro subset"> +##INFO=<ID=AN_non_neuro_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples in non_neuro subset"> +##INFO=<ID=AF_non_neuro_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples in non_neuro subset"> +##INFO=<ID=AC_fin_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Finnish ancestry"> +##INFO=<ID=AN_fin_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Finnish ancestry"> +##INFO=<ID=AF_fin_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Finnish ancestry"> +##INFO=<ID=nhomalt_fin_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Finnish ancestry"> +##INFO=<ID=AC_controls_and_biobanks_asj_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_asj_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_asj_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_asj_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_v2_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes in non_v2 subset"> +##INFO=<ID=AN_non_v2_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes in non_v2 subset"> +##INFO=<ID=AF_non_v2_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes in non_v2 subset"> +##INFO=<ID=AC_non_v2_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=AC_nfe_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Non-Finnish European ancestry"> +##INFO=<ID=AN_nfe_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Non-Finnish European ancestry"> +##INFO=<ID=AF_nfe_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Non-Finnish European ancestry"> +##INFO=<ID=nhomalt_nfe_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Non-Finnish European ancestry"> +##INFO=<ID=AC_controls_and_biobanks_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_ami,Number=A,Type=Integer,Description="Alternate allele count for samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_ami,Number=1,Type=Integer,Description="Total number of alleles in samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_ami,Number=A,Type=Float,Description="Alternate allele frequency in samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_ami,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_topmed_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AC_non_v2_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AC_non_neuro_sas,Number=A,Type=Integer,Description="Alternate allele count for samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_sas,Number=1,Type=Integer,Description="Total number of alleles in samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_sas,Number=A,Type=Float,Description="Alternate allele frequency in samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_sas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_fin_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_fin_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_fin_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_fin_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AC_non_cancer_nfe_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_nfe_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_nfe_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_nfe_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AC_non_v2_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AC_ami,Number=A,Type=Integer,Description="Alternate allele count for samples of Amish ancestry"> +##INFO=<ID=AN_ami,Number=1,Type=Integer,Description="Total number of alleles in samples of Amish ancestry"> +##INFO=<ID=AF_ami,Number=A,Type=Float,Description="Alternate allele frequency in samples of Amish ancestry"> +##INFO=<ID=nhomalt_ami,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Amish ancestry"> +##INFO=<ID=AC_non_cancer_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples in non_cancer subset"> +##INFO=<ID=AN_non_cancer_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples in non_cancer subset"> +##INFO=<ID=AF_non_cancer_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples in non_cancer subset"> +##INFO=<ID=AC_non_v2_sas,Number=A,Type=Integer,Description="Alternate allele count for samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_sas,Number=1,Type=Integer,Description="Total number of alleles in samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_sas,Number=A,Type=Float,Description="Alternate allele frequency in samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_sas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AC_non_topmed_afr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_afr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_afr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_afr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AC_sas,Number=A,Type=Integer,Description="Alternate allele count for samples of South Asian ancestry"> +##INFO=<ID=AN_sas,Number=1,Type=Integer,Description="Total number of alleles in samples of South Asian ancestry"> +##INFO=<ID=AF_sas,Number=A,Type=Float,Description="Alternate allele frequency in samples of South Asian ancestry"> +##INFO=<ID=nhomalt_sas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of South Asian ancestry"> +##INFO=<ID=AC_non_neuro_nfe_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_nfe_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_nfe_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_nfe_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Non-Finnish European ancestry in non_neuro subset"> +##INFO=<ID=AC_non_topmed_ami_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_ami_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_ami_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_ami_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AC_ami_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Amish ancestry"> +##INFO=<ID=AN_ami_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Amish ancestry"> +##INFO=<ID=AF_ami_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Amish ancestry"> +##INFO=<ID=nhomalt_ami_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Amish ancestry"> +##INFO=<ID=AC_oth_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Other ancestry"> +##INFO=<ID=AN_oth_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Other ancestry"> +##INFO=<ID=AF_oth_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Other ancestry"> +##INFO=<ID=nhomalt_oth_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Other ancestry"> +##INFO=<ID=AC_non_cancer_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AC_non_topmed_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples in non_topmed subset"> +##INFO=<ID=AN_non_topmed_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples in non_topmed subset"> +##INFO=<ID=AF_non_topmed_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples in non_topmed subset"> +##INFO=<ID=AC_non_v2_ami,Number=A,Type=Integer,Description="Alternate allele count for samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_ami,Number=1,Type=Integer,Description="Total number of alleles in samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_ami,Number=A,Type=Float,Description="Alternate allele frequency in samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_ami,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AC_non_neuro,Number=A,Type=Integer,Description="Alternate allele count in non_neuro subset"> +##INFO=<ID=AN_non_neuro,Number=1,Type=Integer,Description="Total number of alleles in non_neuro subset"> +##INFO=<ID=AF_non_neuro,Number=A,Type=Float,Description="Alternate allele frequency in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro,Number=A,Type=Integer,Description="Count of homozygous individuals in non_neuro subset"> +##INFO=<ID=AC_amr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Latino ancestry"> +##INFO=<ID=AN_amr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Latino ancestry"> +##INFO=<ID=AF_amr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Latino ancestry"> +##INFO=<ID=nhomalt_amr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Latino ancestry"> +##INFO=<ID=AC_controls_and_biobanks_nfe_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_nfe_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_nfe_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_nfe_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples"> +##INFO=<ID=AN_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples"> +##INFO=<ID=AF_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples"> +##INFO=<ID=nhomalt_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples"> +##INFO=<ID=AC_non_cancer_oth_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_oth_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_oth_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Other ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_oth_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AC_non_v2_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples in non_v2 subset"> +##INFO=<ID=AN_non_v2_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples in non_v2 subset"> +##INFO=<ID=AF_non_v2_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples in non_v2 subset"> +##INFO=<ID=AC_non_topmed_amr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_amr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_amr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_amr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry"> +##INFO=<ID=AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry"> +##INFO=<ID=AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry"> +##INFO=<ID=nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry"> +##INFO=<ID=AC_controls_and_biobanks_nfe_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_nfe_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_nfe_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_nfe_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_asj_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AN_asj_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AF_asj_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=nhomalt_asj_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AC_non_topmed_mid,Number=A,Type=Integer,Description="Alternate allele count for samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_mid,Number=1,Type=Integer,Description="Total number of alleles in samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_mid,Number=A,Type=Float,Description="Alternate allele frequency in samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_mid,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AC_non_cancer_sas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_sas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_sas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_sas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AC_sas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of South Asian ancestry"> +##INFO=<ID=AN_sas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of South Asian ancestry"> +##INFO=<ID=AF_sas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of South Asian ancestry"> +##INFO=<ID=nhomalt_sas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of South Asian ancestry"> +##INFO=<ID=AC_non_topmed,Number=A,Type=Integer,Description="Alternate allele count in non_topmed subset"> +##INFO=<ID=AN_non_topmed,Number=1,Type=Integer,Description="Total number of alleles in non_topmed subset"> +##INFO=<ID=AF_non_topmed,Number=A,Type=Float,Description="Alternate allele frequency in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed,Number=A,Type=Integer,Description="Count of homozygous individuals in non_topmed subset"> +##INFO=<ID=AC_non_v2_oth_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_oth_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_oth_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Other ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_oth_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AC_non_neuro_ami_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_ami_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_ami_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_ami_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AC_controls_and_biobanks_afr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_afr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_afr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_afr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_amr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_amr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_amr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_amr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_topmed_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in non_topmed subset"> +##INFO=<ID=AC_controls_and_biobanks_sas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_sas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_sas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_sas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_neuro_fin_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_fin_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_fin_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_fin_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes in non_cancer subset"> +##INFO=<ID=AN_non_cancer_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes in non_cancer subset"> +##INFO=<ID=AF_non_cancer_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes in non_cancer subset"> +##INFO=<ID=AC_non_neuro_mid,Number=A,Type=Integer,Description="Alternate allele count for samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_mid,Number=1,Type=Integer,Description="Total number of alleles in samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_mid,Number=A,Type=Float,Description="Alternate allele frequency in samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_mid,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AC_non_v2_asj_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_asj_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_asj_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_asj_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=AC_non_v2_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AC_non_neuro_fin_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_fin_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_fin_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_fin_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Finnish ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AC_non_topmed_sas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_sas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_sas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_sas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AC_mid_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Middle Eastern ancestry"> +##INFO=<ID=AN_mid_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Middle Eastern ancestry"> +##INFO=<ID=AF_mid_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Middle Eastern ancestry"> +##INFO=<ID=nhomalt_mid_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Middle Eastern ancestry"> +##INFO=<ID=AC_non_v2_oth_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_oth_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_oth_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Other ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_oth_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Other ancestry in non_v2 subset"> +##INFO=<ID=AC_controls_and_biobanks_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_neuro_eas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_eas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_eas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_eas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AC_non_topmed_eas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_eas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_eas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_eas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AC_non_v2_afr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_afr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_afr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_afr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AC_non_neuro_amr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_amr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_amr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_amr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_ami,Number=A,Type=Integer,Description="Alternate allele count for samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_ami,Number=1,Type=Integer,Description="Total number of alleles in samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_ami,Number=A,Type=Float,Description="Alternate allele frequency in samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_ami,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AC_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples"> +##INFO=<ID=AN_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples"> +##INFO=<ID=AF_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples"> +##INFO=<ID=nhomalt_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples"> +##INFO=<ID=AC_non_topmed_asj_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_asj_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_asj_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_asj_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AC_non_topmed_eas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_eas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_eas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_eas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of East Asian ancestry in non_topmed subset"> +##INFO=<ID=AC_non_v2_eas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_eas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_eas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_eas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry"> +##INFO=<ID=AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry"> +##INFO=<ID=AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry"> +##INFO=<ID=nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry"> +##INFO=<ID=AC_asj_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AN_asj_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AF_asj_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=nhomalt_asj_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AC_non_v2_eas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_eas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_eas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_eas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AC_controls_and_biobanks_mid_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_mid_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_mid_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_mid_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_fin_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Finnish ancestry"> +##INFO=<ID=AN_fin_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Finnish ancestry"> +##INFO=<ID=AF_fin_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Finnish ancestry"> +##INFO=<ID=nhomalt_fin_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Finnish ancestry"> +##INFO=<ID=AC_non_topmed_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry"> +##INFO=<ID=AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry"> +##INFO=<ID=AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry"> +##INFO=<ID=nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry"> +##INFO=<ID=AC_non_neuro_ami,Number=A,Type=Integer,Description="Alternate allele count for samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_ami,Number=1,Type=Integer,Description="Total number of alleles in samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_ami,Number=A,Type=Float,Description="Alternate allele frequency in samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_ami,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_nfe_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_nfe_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_nfe_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_nfe_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AC_non_cancer_mid,Number=A,Type=Integer,Description="Alternate allele count for samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_mid,Number=1,Type=Integer,Description="Total number of alleles in samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_mid,Number=A,Type=Float,Description="Alternate allele frequency in samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_mid,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AC_non_v2_mid_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_mid_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_mid_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_mid_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AC_controls_and_biobanks_amr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_amr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_amr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_amr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Latino ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_cancer_ami_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_ami_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_ami_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_ami_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AC_non_neuro_asj_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_asj_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_asj_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_asj_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African/African-American ancestry"> +##INFO=<ID=AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African/African-American ancestry"> +##INFO=<ID=AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African/African-American ancestry"> +##INFO=<ID=nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African/African-American ancestry"> +##INFO=<ID=AC_non_v2_sas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_sas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_sas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_sas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AC_non_neuro_afr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_afr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_afr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_afr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_sas,Number=A,Type=Integer,Description="Alternate allele count for samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_sas,Number=1,Type=Integer,Description="Total number of alleles in samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_sas,Number=A,Type=Float,Description="Alternate allele frequency in samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_sas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AC_non_topmed_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AC_non_cancer_asj_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_asj_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_asj_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_asj_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AC_non_cancer_mid_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_mid_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_mid_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_mid_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes"> +##INFO=<ID=AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes"> +##INFO=<ID=AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes"> +##INFO=<ID=nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes"> +##INFO=<ID=AC_non_topmed_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples in non_topmed subset"> +##INFO=<ID=AN_non_topmed_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples in non_topmed subset"> +##INFO=<ID=AF_non_topmed_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples in non_topmed subset"> +##INFO=<ID=AC_ami_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Amish ancestry"> +##INFO=<ID=AN_ami_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Amish ancestry"> +##INFO=<ID=AF_ami_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Amish ancestry"> +##INFO=<ID=nhomalt_ami_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Amish ancestry"> +##INFO=<ID=AC_eas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of East Asian ancestry"> +##INFO=<ID=AN_eas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of East Asian ancestry"> +##INFO=<ID=AF_eas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of East Asian ancestry"> +##INFO=<ID=nhomalt_eas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of East Asian ancestry"> +##INFO=<ID=AC_controls_and_biobanks_mid,Number=A,Type=Integer,Description="Alternate allele count for samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_mid,Number=1,Type=Integer,Description="Total number of alleles in samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_mid,Number=A,Type=Float,Description="Alternate allele frequency in samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_mid,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_v2_nfe_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_nfe_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_nfe_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_nfe_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AC_controls_and_biobanks_sas,Number=A,Type=Integer,Description="Alternate allele count for samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_sas,Number=1,Type=Integer,Description="Total number of alleles in samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_sas,Number=A,Type=Float,Description="Alternate allele frequency in samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_sas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_v2_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in non_v2 subset"> +##INFO=<ID=AC_mid,Number=A,Type=Integer,Description="Alternate allele count for samples of Middle Eastern ancestry"> +##INFO=<ID=AN_mid,Number=1,Type=Integer,Description="Total number of alleles in samples of Middle Eastern ancestry"> +##INFO=<ID=AF_mid,Number=A,Type=Float,Description="Alternate allele frequency in samples of Middle Eastern ancestry"> +##INFO=<ID=nhomalt_mid,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Middle Eastern ancestry"> +##INFO=<ID=AC_oth_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Other ancestry"> +##INFO=<ID=AN_oth_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Other ancestry"> +##INFO=<ID=AF_oth_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Other ancestry"> +##INFO=<ID=nhomalt_oth_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Other ancestry"> +##INFO=<ID=AC_non_cancer_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in non_cancer subset"> +##INFO=<ID=AC_non_neuro_eas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_eas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_eas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_eas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AC_non_neuro_sas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_sas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_sas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_sas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of South Asian ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_ami_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_ami_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_ami_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_ami_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Amish ancestry in non_cancer subset"> +##INFO=<ID=AC_mid_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Middle Eastern ancestry"> +##INFO=<ID=AN_mid_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Middle Eastern ancestry"> +##INFO=<ID=AF_mid_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Middle Eastern ancestry"> +##INFO=<ID=nhomalt_mid_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Middle Eastern ancestry"> +##INFO=<ID=AC_non_topmed_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AC_non_v2_asj_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_asj_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_asj_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_asj_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Ashkenazi Jewish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals"> +##INFO=<ID=AC_non_v2_amr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_amr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_amr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_amr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AC_non_cancer_amr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_amr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_amr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_amr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AC_controls_and_biobanks_afr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_afr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_afr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_afr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of African/African-American ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry"> +##INFO=<ID=AC_non_topmed_asj_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_asj_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_asj_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_asj_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Ashkenazi Jewish ancestry in non_topmed subset"> +##INFO=<ID=AC_non_v2_fin_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_fin_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_fin_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_fin_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AC_non_topmed_ami,Number=A,Type=Integer,Description="Alternate allele count for samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_ami,Number=1,Type=Integer,Description="Total number of alleles in samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_ami,Number=A,Type=Float,Description="Alternate allele frequency in samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_ami,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AC_controls_and_biobanks_eas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_eas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_eas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_eas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of East Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_fin_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_fin_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_fin_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_fin_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_topmed_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes in non_topmed subset"> +##INFO=<ID=AN_non_topmed_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes in non_topmed subset"> +##INFO=<ID=AF_non_topmed_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes in non_topmed subset"> +##INFO=<ID=AC_non_cancer_eas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_eas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_eas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_eas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of East Asian ancestry in non_cancer subset"> +##INFO=<ID=AC_non_cancer,Number=A,Type=Integer,Description="Alternate allele count in non_cancer subset"> +##INFO=<ID=AN_non_cancer,Number=1,Type=Integer,Description="Total number of alleles in non_cancer subset"> +##INFO=<ID=AF_non_cancer,Number=A,Type=Float,Description="Alternate allele frequency in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer,Number=A,Type=Integer,Description="Count of homozygous individuals in non_cancer subset"> +##INFO=<ID=AC_controls_and_biobanks_ami_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_ami_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_ami_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_ami_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_mid_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_mid_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_mid_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_mid_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Middle Eastern ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_v2_afr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_afr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_afr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_afr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of African/African-American ancestry in non_v2 subset"> +##INFO=<ID=AC_non_v2_sas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_sas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_sas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_sas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of South Asian ancestry in non_v2 subset"> +##INFO=<ID=AC_non_v2_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AC_non_neuro_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_sas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_sas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_sas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_sas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of South Asian ancestry in non_cancer subset"> +##INFO=<ID=AC_non_neuro_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in non_neuro subset"> +##INFO=<ID=AC_non_topmed_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AC_non_topmed_afr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_afr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_afr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_afr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of African/African-American ancestry in non_topmed subset"> +##INFO=<ID=AC_non_neuro_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in non_neuro subset"> +##INFO=<ID=AC_afr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of African/African-American ancestry"> +##INFO=<ID=AN_afr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of African/African-American ancestry"> +##INFO=<ID=AF_afr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of African/African-American ancestry"> +##INFO=<ID=nhomalt_afr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of African/African-American ancestry"> +##INFO=<ID=AC_non_neuro_mid_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_mid_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_mid_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_mid_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AC_non_topmed_fin_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_fin_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_fin_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_fin_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AC_non_cancer_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AC_non_v2_ami_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_ami_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_ami_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_ami_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AC_afr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of African/African-American ancestry"> +##INFO=<ID=AN_afr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of African/African-American ancestry"> +##INFO=<ID=AF_afr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of African/African-American ancestry"> +##INFO=<ID=nhomalt_afr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of African/African-American ancestry"> +##INFO=<ID=AC_non_v2_mid_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_mid_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_mid_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_mid_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Middle Eastern ancestry in non_v2 subset"> +##INFO=<ID=AC_non_topmed_fin_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_fin_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_fin_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_fin_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Finnish ancestry in non_topmed subset"> +##INFO=<ID=AC_non_neuro_amr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_amr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_amr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_amr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AC_non_topmed_mid_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_mid_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_mid_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_mid_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Middle Eastern ancestry in non_topmed subset"> +##INFO=<ID=AC_controls_and_biobanks_asj_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_asj_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_asj_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_asj_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_v2_fin_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_fin_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_fin_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_fin_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Finnish ancestry in non_v2 subset"> +##INFO=<ID=AC_controls_and_biobanks_ami_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_ami_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_ami_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_ami_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Amish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_eas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of East Asian ancestry"> +##INFO=<ID=AN_eas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of East Asian ancestry"> +##INFO=<ID=AF_eas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of East Asian ancestry"> +##INFO=<ID=nhomalt_eas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of East Asian ancestry"> +##INFO=<ID=AC_non_cancer_amr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_amr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_amr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_amr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Latino ancestry in non_cancer subset"> +##INFO=<ID=AC_non_neuro_ami_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_ami_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_ami_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_ami_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Amish ancestry in non_neuro subset"> +##INFO=<ID=AC_controls_and_biobanks,Number=A,Type=Integer,Description="Alternate allele count in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks,Number=1,Type=Integer,Description="Total number of alleles in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks,Number=A,Type=Float,Description="Alternate allele frequency in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks,Number=A,Type=Integer,Description="Count of homozygous individuals in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_nfe_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Non-Finnish European ancestry"> +##INFO=<ID=AN_nfe_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Non-Finnish European ancestry"> +##INFO=<ID=AF_nfe_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Non-Finnish European ancestry"> +##INFO=<ID=nhomalt_nfe_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Non-Finnish European ancestry"> +##INFO=<ID=AC_non_cancer_afr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_afr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_afr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_afr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AC_controls_and_biobanks_sas_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_sas_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_sas_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_sas_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of South Asian ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_cancer_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AC_non_topmed_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AC_non_topmed_nfe_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_nfe_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_nfe_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_nfe_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Non-Finnish European ancestry in non_topmed subset"> +##INFO=<ID=AC_non_topmed_sas_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_sas_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_sas_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_sas_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of South Asian ancestry in non_topmed subset"> +##INFO=<ID=AC_non_v2_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in non_v2 subset"> +##INFO=<ID=AC_non_topmed_oth_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_oth_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_oth_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Other ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_oth_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AC_non_cancer_mid_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_mid_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_mid_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_mid_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Middle Eastern ancestry in non_cancer subset"> +##INFO=<ID=AC_controls_and_biobanks_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_oth_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_oth_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_oth_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_oth_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_controls_and_biobanks_fin_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_fin_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_fin_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_fin_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Finnish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_v2_amr_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_amr_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_amr_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_amr_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Latino ancestry in non_v2 subset"> +##INFO=<ID=AC_non_cancer_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in non_cancer subset"> +##INFO=<ID=AC_non_cancer_oth_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_oth_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_oth_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Other ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_oth_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Other ancestry in non_cancer subset"> +##INFO=<ID=AC_non_neuro_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in non_neuro subset"> +##INFO=<ID=AC_non_cancer_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples in non_cancer subset"> +##INFO=<ID=AN_non_cancer_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples in non_cancer subset"> +##INFO=<ID=AF_non_cancer_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples in non_cancer subset"> +##INFO=<ID=AC_non_v2_ami_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AN_non_v2_ami_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AF_non_v2_ami_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=nhomalt_non_v2_ami_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Amish ancestry in non_v2 subset"> +##INFO=<ID=AC_non_neuro_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes in non_neuro subset"> +##INFO=<ID=AN_non_neuro_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes in non_neuro subset"> +##INFO=<ID=AF_non_neuro_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes in non_neuro subset"> +##INFO=<ID=AC_non_neuro_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African/African-American ancestry in non_neuro subset"> +##INFO=<ID=AC_non_topmed_ami_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_ami_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_ami_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_ami_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Amish ancestry in non_topmed subset"> +##INFO=<ID=AC_non_neuro_oth_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_oth_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_oth_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Other ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_oth_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AC_non_neuro_oth_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_oth_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_oth_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Other ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_oth_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Other ancestry in non_neuro subset"> +##INFO=<ID=AC_controls_and_biobanks_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples in controls_and_biobanks subset"> +##INFO=<ID=AC_non_cancer_afr_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_afr_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_afr_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_afr_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of African/African-American ancestry in non_cancer subset"> +##INFO=<ID=AC_non_cancer_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AN_non_cancer_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AF_non_cancer_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=nhomalt_non_cancer_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in non_cancer subset"> +##INFO=<ID=AC_controls_and_biobanks_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_topmed_oth_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AN_non_topmed_oth_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AF_non_topmed_oth_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples of Other ancestry in non_topmed subset"> +##INFO=<ID=nhomalt_non_topmed_oth_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples of Other ancestry in non_topmed subset"> +##INFO=<ID=AC_non_neuro_mid_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AN_non_neuro_mid_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AF_non_neuro_mid_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_mid_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Middle Eastern ancestry in non_neuro subset"> +##INFO=<ID=AC_controls_and_biobanks_oth_XX,Number=A,Type=Integer,Description="Alternate allele count for XX samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AN_controls_and_biobanks_oth_XX,Number=1,Type=Integer,Description="Total number of alleles in XX samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AF_controls_and_biobanks_oth_XX,Number=A,Type=Float,Description="Alternate allele frequency in XX samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=nhomalt_controls_and_biobanks_oth_XX,Number=A,Type=Integer,Description="Count of homozygous individuals in XX samples of Other ancestry in controls_and_biobanks subset"> +##INFO=<ID=AC_non_neuro_XY,Number=A,Type=Integer,Description="Alternate allele count for XY samples in non_neuro subset"> +##INFO=<ID=AN_non_neuro_XY,Number=1,Type=Integer,Description="Total number of alleles in XY samples in non_neuro subset"> +##INFO=<ID=AF_non_neuro_XY,Number=A,Type=Float,Description="Alternate allele frequency in XY samples in non_neuro subset"> +##INFO=<ID=nhomalt_non_neuro_XY,Number=A,Type=Integer,Description="Count of homozygous individuals in XY samples in non_neuro subset"> +##INFO=<ID=AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry"> +##INFO=<ID=AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry"> +##INFO=<ID=AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry"> +##INFO=<ID=nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry"> +##INFO=<ID=AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF"> +##INFO=<ID=AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF"> +##INFO=<ID=AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations"> +##INFO=<ID=nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency"> +##INFO=<ID=faf95_amr_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XY samples of Latino ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_amr_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XY samples of Latino ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_sas_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XY samples of South Asian ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_sas_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XY samples of South Asian ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_nfe_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XX samples of Non-Finnish European ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_nfe_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XX samples of Non-Finnish European ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_sas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry"> +##INFO=<ID=faf99_sas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry"> +##INFO=<ID=faf95_amr_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XX samples of Latino ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_amr_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XX samples of Latino ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XX samples in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XX samples in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_sas_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XX samples of South Asian ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_sas_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XX samples of South Asian ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XY samples in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XY samples in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry"> +##INFO=<ID=faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry"> +##INFO=<ID=faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry"> +##INFO=<ID=faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry"> +##INFO=<ID=faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African/African-American ancestry"> +##INFO=<ID=faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African/African-American ancestry"> +##INFO=<ID=faf95_eas_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XY samples of East Asian ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_eas_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XY samples of East Asian ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI)"> +##INFO=<ID=faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI)"> +##INFO=<ID=faf95_afr_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XX samples of African/African-American ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_afr_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XX samples of African/African-American ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_afr_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XY samples of African/African-American ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_afr_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XY samples of African/African-American ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_eas_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XX samples of East Asian ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_eas_XX,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XX samples of East Asian ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_nfe_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for XY samples of Non-Finnish European ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf99_nfe_XY,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for XY samples of Non-Finnish European ancestry in non-PAR regions of sex chromosomes only"> +##INFO=<ID=faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry"> +##INFO=<ID=faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry"> +##INFO=<ID=age_hist_het_bin_freq,Number=A,Type=String,Description="Histogram of ages of heterozygous individuals; bin edges are: 30.0|35.0|40.0|45.0|50.0|55.0|60.0|65.0|70.0|75.0|80.0; total number of individuals of any genotype bin: bin_edges|bin_freq|n_smaller|n_larger"> +##INFO=<ID=age_hist_het_n_smaller,Number=A,Type=Integer,Description="Count of age values falling below lowest histogram bin edge for heterozygous individuals"> +##INFO=<ID=age_hist_het_n_larger,Number=A,Type=Integer,Description="Count of age values falling above highest histogram bin edge for heterozygous individuals"> +##INFO=<ID=age_hist_hom_bin_freq,Number=A,Type=String,Description="Histogram of ages of homozygous alternate individuals; bin edges are: 30.0|35.0|40.0|45.0|50.0|55.0|60.0|65.0|70.0|75.0|80.0; total number of individuals of any genotype bin: bin_edges|bin_freq|n_smaller|n_larger"> +##INFO=<ID=age_hist_hom_n_smaller,Number=A,Type=Integer,Description="Count of age values falling below lowest histogram bin edge for homozygous alternate individuals"> +##INFO=<ID=age_hist_hom_n_larger,Number=A,Type=Integer,Description="Count of age values falling above highest histogram bin edge for homozygous alternate individuals"> +##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value of Fisher's exact test for strand bias"> +##INFO=<ID=MQ,Number=1,Type=Float,Description="Root mean square of the mapping quality of reads across all samples"> +##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference read mapping qualities"> +##INFO=<ID=QD,Number=1,Type=Float,Description="Variant call confidence normalized by depth of sample reads supporting a variant"> +##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference read position bias"> +##INFO=<ID=VarDP,Number=1,Type=Integer,Description="Depth over variant genotypes (does not include depth of reference samples)"> +##INFO=<ID=monoallelic,Number=0,Type=Flag,Description="All samples are all homozygous alternate for the variant"> +##INFO=<ID=QUALapprox,Number=1,Type=Integer,Description="Sum of PL[0] values; used to approximate the QUAL score"> +##INFO=<ID=transmitted_singleton,Number=0,Type=Flag,Description="Variant was a callset-wide doubleton that was transmitted within a family from a parent to a child (i.e., a singleton amongst unrelated samples in cohort)"> +##INFO=<ID=AS_FS,Number=A,Type=Float,Description="Allele-specific phred-scaled p-value of Fisher's exact test for strand bias"> +##INFO=<ID=AS_MQ,Number=A,Type=Float,Description="Allele-specific root mean square of the mapping quality of reads across all samples"> +##INFO=<ID=AS_MQRankSum,Number=A,Type=Float,Description="Allele-specific z-score from Wilcoxon rank sum test of alternate vs. reference read mapping qualities"> +##INFO=<ID=AS_pab_max,Number=A,Type=Float,Description="Maximum p-value over callset for binomial test of observed allele balance for a heterozygous genotype, given expectation of 0.5"> +##INFO=<ID=AS_QD,Number=A,Type=Float,Description="Allele-specific variant call confidence normalized by depth of sample reads supporting a variant"> +##INFO=<ID=AS_ReadPosRankSum,Number=A,Type=Float,Description="Allele-specific z-score from Wilcoxon rank sum test of alternate vs. reference read position bias"> +##INFO=<ID=AS_SOR,Number=A,Type=Float,Description="Allele-specific strand bias estimated by the symmetric odds ratio test"> +##INFO=<ID=InbreedingCoeff,Number=A,Type=Float,Description="Inbreeding coefficient, the excess heterozygosity at a variant site, computed as 1 - (the number of heterozygous genotypes)/(the number of heterozygous genotypes expected under Hardy-Weinberg equilibrium)"> +##INFO=<ID=AS_SB_TABLE,Number=.,Type=String,Description="Allele-specific forward/reverse read counts for strand bias tests"> +##INFO=<ID=AS_VQSLOD,Number=A,Type=Float,Description="Allele-specific log-odds ratio of being a true variant versus being a false positive under the trained VQSR Gaussian mixture model"> +##INFO=<ID=AS_culprit,Number=A,Type=String,Description="Allele-specific worst-performing annotation in the VQSR Gaussian mixture model"> +##INFO=<ID=NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="Variant was used to build the negative training set of low-quality variants for VQSR"> +##INFO=<ID=POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="Variant was used to build the positive training set of high-quality variants for VQSR"> +##INFO=<ID=allele_type,Number=1,Type=String,Description="Allele type (snv, insertion, deletion, or mixed)"> +##INFO=<ID=n_alt_alleles,Number=1,Type=Integer,Description="Total number of alternate alleles observed at variant locus"> +##INFO=<ID=variant_type,Number=1,Type=String,Description="Variant type (snv, indel, multi-snv, multi-indel, or mixed)"> +##INFO=<ID=was_mixed,Number=0,Type=Flag,Description="Variant type was mixed"> +##INFO=<ID=lcr,Number=0,Type=Flag,Description="Variant falls within a low complexity region"> +##INFO=<ID=nonpar,Number=0,Type=Flag,Description="Variant (on sex chromosome) falls outside a pseudoautosomal region"> +##INFO=<ID=segdup,Number=0,Type=Flag,Description="Variant falls within a segmental duplication region"> +##INFO=<ID=gq_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for GQ in heterozygous individuals calculated on high quality genotypes; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> +##INFO=<ID=gq_hist_all_bin_freq,Number=A,Type=String,Description="Histogram for GQ calculated on high quality genotypes; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> +##INFO=<ID=dp_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for DP in heterozygous individuals calculated on high quality genotypes; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> +##INFO=<ID=dp_hist_alt_n_larger,Number=A,Type=Integer,Description="Count of DP values falling above highest histogram bin edge DP in heterozygous individuals calculated on high quality genotypes"> +##INFO=<ID=dp_hist_all_bin_freq,Number=A,Type=String,Description="Histogram for DP calculated on high quality genotypes; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> +##INFO=<ID=dp_hist_all_n_smaller,Number=A,Type=Integer,Description="Count of DP values falling below lowest histogram bin edge DP calculated on high quality genotypes"> +##INFO=<ID=dp_hist_all_n_larger,Number=A,Type=Integer,Description="Count of DP values falling above highest histogram bin edge DP calculated on high quality genotypes"> +##INFO=<ID=ab_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for AB in heterozygous individuals calculated on high quality genotypes; bin edges are: 0.00|0.05|0.10|0.15|0.20|0.25|0.30|0.35|0.40|0.45|0.50|0.55|0.60|0.65|0.70|0.75|0.80|0.85|0.90|0.95|1.00"> +##INFO=<ID=cadd_raw_score,Number=1,Type=Float,Description="Raw CADD scores are interpretable as the extent to which the annotation profile for a given variant suggests that the variant is likely to be 'observed' (negative values) vs 'simulated' (positive values). Larger values are more deleterious."> +##INFO=<ID=cadd_phred,Number=1,Type=Float,Description="Cadd Phred-like scores ('scaled C-scores') ranging from 1 to 99, based on the rank of each variant relative to all possible 8.6 billion substitutions in the human reference genome. Larger values are more deleterious"> +##INFO=<ID=revel_score,Number=1,Type=Float,Description="dbNSFP's Revel score from 0 to 1. Variants with higher scores are predicted to be more likely to be deleterious."> +##INFO=<ID=splice_ai_max_ds,Number=1,Type=Float,Description="Illumina's SpliceAI max delta score; interpreted as the probability of the variant being splice-altering."> +##INFO=<ID=splice_ai_consequence,Number=1,Type=String,Description="The consequence term associated with the max delta score in 'splice_ai_max_ds'."> +##INFO=<ID=primate_ai_score,Number=1,Type=Float,Description="PrimateAI's deleteriousness score from 0 (less deleterious) to 1 (more deleterious)."> +##INFO=<ID=vep,Number=.,Type=String,Description="Consequence annotations from Ensembl VEP. Format: Allele|Consequence|IMPACT|SYMBOL|Gene|Feature_type|Feature|BIOTYPE|EXON|INTRON|HGVSc|HGVSp|cDNA_position|CDS_position|Protein_position|Amino_acids|Codons|ALLELE_NUM|DISTANCE|STRAND|VARIANT_CLASS|MINIMISED|SYMBOL_SOURCE|HGNC_ID|CANONICAL|TSL|APPRIS|CCDS|ENSP|SWISSPROT|TREMBL|UNIPARC|GENE_PHENO|SIFT|PolyPhen|DOMAINS|HGVS_OFFSET|MOTIF_NAME|MOTIF_POS|HIGH_INF_POS|MOTIF_SCORE_CHANGE|LoF|LoF_filter|LoF_flags|LoF_info"> +##vep_version=v101 +##dbsnp_version=b154 +##age_distributions=bin_edges=[30.0, 35.0, 40.0, 45.0, 50.0, 55.0, 60.0, 65.0, 70.0, 75.0, 80.0], bin_freq=[1428, 1606, 1905, 3228, 4577, 3924, 3656, 3194, 2153, 1283], n_smaller=3760, n_larger=454 +##contig=<ID=chr1,length=248956422,assembly=gnomAD_GRCh38> +##contig=<ID=chr2,length=242193529,assembly=gnomAD_GRCh38> +##contig=<ID=chr3,length=198295559,assembly=gnomAD_GRCh38> +##contig=<ID=chr4,length=190214555,assembly=gnomAD_GRCh38> +##contig=<ID=chr5,length=181538259,assembly=gnomAD_GRCh38> +##contig=<ID=chr6,length=170805979,assembly=gnomAD_GRCh38> +##contig=<ID=chr7,length=159345973,assembly=gnomAD_GRCh38> +##contig=<ID=chr8,length=145138636,assembly=gnomAD_GRCh38> +##contig=<ID=chr9,length=138394717,assembly=gnomAD_GRCh38> +##contig=<ID=chr10,length=133797422,assembly=gnomAD_GRCh38> +##contig=<ID=chr11,length=135086622,assembly=gnomAD_GRCh38> +##contig=<ID=chr12,length=133275309,assembly=gnomAD_GRCh38> +##contig=<ID=chr13,length=114364328,assembly=gnomAD_GRCh38> +##contig=<ID=chr14,length=107043718,assembly=gnomAD_GRCh38> +##contig=<ID=chr15,length=101991189,assembly=gnomAD_GRCh38> +##contig=<ID=chr16,length=90338345,assembly=gnomAD_GRCh38> +##contig=<ID=chr17,length=83257441,assembly=gnomAD_GRCh38> +##contig=<ID=chr18,length=80373285,assembly=gnomAD_GRCh38> +##contig=<ID=chr19,length=58617616,assembly=gnomAD_GRCh38> +##contig=<ID=chr20,length=64444167,assembly=gnomAD_GRCh38> +##contig=<ID=chr21,length=46709983,assembly=gnomAD_GRCh38> +##contig=<ID=chr22,length=50818468,assembly=gnomAD_GRCh38> +##contig=<ID=chrX,length=156040895,assembly=gnomAD_GRCh38> +##contig=<ID=chrY,length=57227415,assembly=gnomAD_GRCh38> +##contig=<ID=chrM,length=16569,assembly=gnomAD_GRCh38> +#CHROM POS ID REF ALT QUAL FILTER INFO +chr3 130395447 rs115380050 C T . PASS AC=789;AN=152160;AF=0.00518533;popmax=afr;faf95_popmax=0.0170978;AC_non_v2_XX=307;AN_non_v2_XX=60168;AF_non_v2_XX=0.00510238;nhomalt_non_v2_XX=2;AC_non_cancer_fin_XX=0;AN_non_cancer_fin_XX=2574;AF_non_cancer_fin_XX=0.00000;nhomalt_non_cancer_fin_XX=0;AC_non_neuro_nfe=3;AN_non_neuro_nfe=63906;AF_non_neuro_nfe=4.69439e-05;nhomalt_non_neuro_nfe=0;AC_non_neuro_afr_XY=226;AN_non_neuro_afr_XY=13740;AF_non_neuro_afr_XY=0.0164483;nhomalt_non_neuro_afr_XY=3;AC_non_neuro_nfe_XY=1;AN_non_neuro_nfe_XY=26266;AF_non_neuro_nfe_XY=3.80720e-05;nhomalt_non_neuro_nfe_XY=0;AC_controls_and_biobanks_eas_XY=0;AN_controls_and_biobanks_eas_XY=1396;AF_controls_and_biobanks_eas_XY=0.00000;nhomalt_controls_and_biobanks_eas_XY=0;AC_non_neuro_sas_XX=0;AN_non_neuro_sas_XX=1166;AF_non_neuro_sas_XX=0.00000;nhomalt_non_neuro_sas_XX=0;AC_non_v2=550;AN_non_v2=114564;AF_non_v2=0.00480081;nhomalt_non_v2=6;AC_non_topmed_nfe_XX=0;AN_non_topmed_nfe_XX=9322;AF_non_topmed_nfe_XX=0.00000;nhomalt_non_topmed_nfe_XX=0;AC_non_v2_mid=0;AN_non_v2_mid=308;AF_non_v2_mid=0.00000;nhomalt_non_v2_mid=0;AC_non_topmed_sas=2;AN_non_topmed_sas=4804;AF_non_topmed_sas=0.000416320;nhomalt_non_topmed_sas=0;AC_non_cancer_eas_XX=0;AN_non_cancer_eas_XX=2176;AF_non_cancer_eas_XX=0.00000;nhomalt_non_cancer_eas_XX=0;AC_amr_XY=12;AN_amr_XY=8488;AF_amr_XY=0.00141376;nhomalt_amr_XY=0;AC_non_v2_nfe_XX=2;AN_non_v2_nfe_XX=31784;AF_non_v2_nfe_XX=6.29247e-05;nhomalt_non_v2_nfe_XX=0;AC_controls_and_biobanks_XY=77;AN_controls_and_biobanks_XY=19452;AF_controls_and_biobanks_XY=0.00395846;nhomalt_controls_and_biobanks_XY=2;AC_non_neuro_asj_XY=0;AN_non_neuro_asj_XY=1556;AF_non_neuro_asj_XY=0.00000;nhomalt_non_neuro_asj_XY=0;AC_oth=5;AN_oth=2090;AF_oth=0.00239234;nhomalt_oth=0;AC_non_topmed_mid_XY=0;AN_non_topmed_mid_XY=130;AF_non_topmed_mid_XY=0.00000;nhomalt_non_topmed_mid_XY=0;AC_non_cancer_asj_XX=0;AN_non_cancer_asj_XX=1744;AF_non_cancer_asj_XX=0.00000;nhomalt_non_cancer_asj_XX=0;AC_sas_XY=2;AN_sas_XY=3666;AF_sas_XY=0.000545554;nhomalt_sas_XY=0;AC_non_neuro_fin=0;AN_non_neuro_fin=6964;AF_non_neuro_fin=0.00000;nhomalt_non_neuro_fin=0;AC_non_topmed_amr_XY=10;AN_non_topmed_amr_XY=7584;AF_non_topmed_amr_XY=0.00131857;nhomalt_non_topmed_amr_XY=0;AC_non_neuro_XX=385;AN_non_neuro_XX=70486;AF_non_neuro_XX=0.00546208;nhomalt_non_neuro_XX=4;AC_fin_XX=0;AN_fin_XX=2574;AF_fin_XX=0.00000;nhomalt_fin_XX=0;AC_controls_and_biobanks_asj_XX=0;AN_controls_and_biobanks_asj_XX=84;AF_controls_and_biobanks_asj_XX=0.00000;nhomalt_controls_and_biobanks_asj_XX=0;AC_non_v2_raw=550;AN_non_v2_raw=114646;AF_non_v2_raw=0.00479738;nhomalt_non_v2_raw=6;AC_non_v2_asj=0;AN_non_v2_asj=3074;AF_non_v2_asj=0.00000;nhomalt_non_v2_asj=0;AC_nfe_XX=2;AN_nfe_XX=39354;AF_nfe_XX=5.08208e-05;nhomalt_nfe_XX=0;AC_controls_and_biobanks_raw=184;AN_controls_and_biobanks_raw=32918;AF_controls_and_biobanks_raw=0.00558965;nhomalt_controls_and_biobanks_raw=5;AC_controls_and_biobanks_ami=0;AN_controls_and_biobanks_ami=60;AF_controls_and_biobanks_ami=0.00000;nhomalt_controls_and_biobanks_ami=0;AC_non_topmed_eas=0;AN_non_topmed_eas=3758;AF_non_topmed_eas=0.00000;nhomalt_non_topmed_eas=0;AC_non_v2_amr=22;AN_non_v2_amr=13732;AF_non_v2_amr=0.00160210;nhomalt_non_v2_amr=0;AC_non_neuro_sas=2;AN_non_neuro_sas=4830;AF_non_neuro_sas=0.000414079;nhomalt_non_neuro_sas=0;AC_non_cancer_fin_XY=0;AN_non_cancer_fin_XY=8032;AF_non_cancer_fin_XY=0.00000;nhomalt_non_cancer_fin_XY=0;AC_non_cancer_nfe_XY=1;AN_non_cancer_nfe_XY=26732;AF_non_cancer_nfe_XY=3.74083e-05;nhomalt_non_cancer_nfe_XY=0;AC_non_v2_oth=5;AN_non_v2_oth=1860;AF_non_v2_oth=0.00268817;nhomalt_non_v2_oth=0;AC_ami=0;AN_ami=910;AF_ami=0.00000;nhomalt_ami=0;AC_non_cancer_XY=351;AN_non_cancer_XY=71840;AF_non_cancer_XY=0.00488586;nhomalt_non_cancer_XY=4;AC_non_v2_sas=2;AN_non_v2_sas=3886;AF_non_v2_sas=0.000514668;nhomalt_non_v2_sas=0;AC_non_topmed_afr_XX=231;AN_non_topmed_afr_XX=11926;AF_non_topmed_afr_XX=0.0193694;nhomalt_non_topmed_afr_XX=3;AC_sas=2;AN_sas=4832;AF_sas=0.000413907;nhomalt_sas=0;AC_non_neuro_nfe_XX=2;AN_non_neuro_nfe_XX=37640;AF_non_neuro_nfe_XX=5.31350e-05;nhomalt_non_neuro_nfe_XX=0;AC_non_topmed_ami_XX=0;AN_non_topmed_ami_XX=66;AF_non_topmed_ami_XX=0.00000;nhomalt_non_topmed_ami_XX=0;AC_ami_XY=0;AN_ami_XY=442;AF_ami_XY=0.00000;nhomalt_ami_XY=0;AC_oth_XX=2;AN_oth_XX=1032;AF_oth_XX=0.00193798;nhomalt_oth_XX=0;AC_non_cancer_eas=0;AN_non_cancer_eas=4964;AF_non_cancer_eas=0.00000;nhomalt_non_cancer_eas=0;AC_non_topmed_XY=244;AN_non_topmed_XY=47904;AF_non_topmed_XY=0.00509352;nhomalt_non_topmed_XY=3;AC_non_v2_ami=0;AN_non_v2_ami=908;AF_non_v2_ami=0.00000;nhomalt_non_v2_ami=0;AC_non_neuro=628;AN_non_neuro=134750;AF_non_neuro=0.00466048;nhomalt_non_neuro=7;AC_amr_XX=14;AN_amr_XX=6782;AF_amr_XX=0.00206429;nhomalt_amr_XX=0;AC_controls_and_biobanks_nfe_XY=0;AN_controls_and_biobanks_nfe_XY=3596;AF_controls_and_biobanks_nfe_XY=0.00000;nhomalt_controls_and_biobanks_nfe_XY=0;AC_controls_and_biobanks_eas=0;AN_controls_and_biobanks_eas=2424;AF_controls_and_biobanks_eas=0.00000;nhomalt_controls_and_biobanks_eas=0;AC_XX=435;AN_XX=77830;AF_XX=0.00558910;nhomalt_XX=4;AC_non_cancer_oth_XY=2;AN_non_cancer_oth_XY=1012;AF_non_cancer_oth_XY=0.00197628;nhomalt_non_cancer_oth_XY=0;AC_non_v2_XY=243;AN_non_v2_XY=54396;AF_non_v2_XY=0.00446724;nhomalt_non_v2_XY=4;AC_non_topmed_amr_XX=12;AN_non_topmed_amr_XX=5312;AF_non_topmed_amr_XX=0.00225904;nhomalt_non_topmed_amr_XX=0;AC_fin=0;AN_fin=10606;AF_fin=0.00000;nhomalt_fin=0;AC_controls_and_biobanks_nfe_XX=0;AN_controls_and_biobanks_nfe_XX=3256;AF_controls_and_biobanks_nfe_XX=0.00000;nhomalt_controls_and_biobanks_nfe_XX=0;AC_controls_and_biobanks_afr=171;AN_controls_and_biobanks_afr=9090;AF_controls_and_biobanks_afr=0.0188119;nhomalt_controls_and_biobanks_afr=5;AC_asj_XX=0;AN_asj_XX=1866;AF_asj_XX=0.00000;nhomalt_asj_XX=0;AC_non_topmed_mid=0;AN_non_topmed_mid=272;AF_non_topmed_mid=0.00000;nhomalt_non_topmed_mid=0;AC_non_cancer_sas_XY=2;AN_non_cancer_sas_XY=3652;AF_non_cancer_sas_XY=0.000547645;nhomalt_non_cancer_sas_XY=0;AC_sas_XX=0;AN_sas_XX=1166;AF_sas_XX=0.00000;nhomalt_sas_XX=0;AC_non_topmed=489;AN_non_topmed=80720;AF_non_topmed=0.00605798;nhomalt_non_topmed=6;AC_non_v2_oth_XX=2;AN_non_v2_oth_XX=932;AF_non_v2_oth_XX=0.00214592;nhomalt_non_v2_oth_XX=0;AC_non_neuro_ami_XY=0;AN_non_neuro_ami_XY=430;AF_non_neuro_ami_XY=0.00000;nhomalt_non_neuro_ami_XY=0;AC_controls_and_biobanks_afr_XY=70;AN_controls_and_biobanks_afr_XY=4378;AF_controls_and_biobanks_afr_XY=0.0159890;nhomalt_controls_and_biobanks_afr_XY=2;AC_controls_and_biobanks_amr_XX=5;AN_controls_and_biobanks_amr_XX=2480;AF_controls_and_biobanks_amr_XX=0.00201613;nhomalt_controls_and_biobanks_amr_XX=0;AC_non_topmed_amr=22;AN_non_topmed_amr=12896;AF_non_topmed_amr=0.00170596;nhomalt_non_topmed_amr=0;AC_controls_and_biobanks_sas_XX=0;AN_controls_and_biobanks_sas_XX=842;AF_controls_and_biobanks_sas_XX=0.00000;nhomalt_controls_and_biobanks_sas_XX=0;AC_controls_and_biobanks_amr=9;AN_controls_and_biobanks_amr=4690;AF_controls_and_biobanks_amr=0.00191898;nhomalt_controls_and_biobanks_amr=0;AC_non_neuro_fin_XX=0;AN_non_neuro_fin_XX=658;AF_non_neuro_fin_XX=0.00000;nhomalt_non_neuro_fin_XX=0;AC_non_cancer_raw=784;AN_non_cancer_raw=148014;AF_non_cancer_raw=0.00529680;nhomalt_non_cancer_raw=8;AC_non_neuro_mid=0;AN_non_neuro_mid=310;AF_non_neuro_mid=0.00000;nhomalt_non_neuro_mid=0;AC_non_v2_asj_XY=0;AN_non_v2_asj_XY=1388;AF_non_v2_asj_XY=0.00000;nhomalt_non_v2_asj_XY=0;AC_non_v2_afr=518;AN_non_v2_afr=28710;AF_non_v2_afr=0.0180425;nhomalt_non_v2_afr=6;AC_non_neuro_fin_XY=0;AN_non_neuro_fin_XY=6306;AF_non_neuro_fin_XY=0.00000;nhomalt_non_neuro_fin_XY=0;AC_non_cancer_afr=749;AN_non_cancer_afr=41112;AF_non_cancer_afr=0.0182185;nhomalt_non_cancer_afr=8;AC_non_topmed_sas_XY=2;AN_non_topmed_sas_XY=3644;AF_non_topmed_sas_XY=0.000548847;nhomalt_non_topmed_sas_XY=0;AC_mid_XY=0;AN_mid_XY=152;AF_mid_XY=0.00000;nhomalt_mid_XY=0;AC_non_v2_oth_XY=3;AN_non_v2_oth_XY=928;AF_non_v2_oth_XY=0.00323276;nhomalt_non_v2_oth_XY=0;AC_controls_and_biobanks_fin=0;AN_controls_and_biobanks_fin=5476;AF_controls_and_biobanks_fin=0.00000;nhomalt_controls_and_biobanks_fin=0;AC_non_neuro_eas_XY=0;AN_non_neuro_eas_XY=2920;AF_non_neuro_eas_XY=0.00000;nhomalt_non_neuro_eas_XY=0;AC_non_topmed_eas_XX=0;AN_non_topmed_eas_XX=1406;AF_non_topmed_eas_XX=0.00000;nhomalt_non_topmed_eas_XX=0;AC_non_v2_afr_XX=291;AN_non_v2_afr_XX=15808;AF_non_v2_afr_XX=0.0184084;nhomalt_non_v2_afr_XX=2;AC_non_neuro_amr_XX=14;AN_non_neuro_amr_XX=6592;AF_non_neuro_amr_XX=0.00212379;nhomalt_non_neuro_amr_XX=0;AC_non_cancer_ami=0;AN_non_cancer_ami=910;AF_non_cancer_ami=0.00000;nhomalt_non_cancer_ami=0;AC_XY=354;AN_XY=74330;AF_XY=0.00476255;nhomalt_XY=4;AC_non_topmed_asj_XX=0;AN_non_topmed_asj_XX=278;AF_non_topmed_asj_XX=0.00000;nhomalt_non_topmed_asj_XX=0;AC_non_topmed_eas_XY=0;AN_non_topmed_eas_XY=2352;AF_non_topmed_eas_XY=0.00000;nhomalt_non_topmed_eas_XY=0;AC_non_v2_eas_XY=0;AN_non_v2_eas_XY=1516;AF_non_v2_eas_XY=0.00000;nhomalt_non_v2_eas_XY=0;AC_eas=0;AN_eas=5200;AF_eas=0.00000;nhomalt_eas=0;AC_asj_XY=0;AN_asj_XY=1604;AF_asj_XY=0.00000;nhomalt_asj_XY=0;AC_non_v2_eas_XX=0;AN_non_v2_eas_XX=1312;AF_non_v2_eas_XX=0.00000;nhomalt_non_v2_eas_XX=0;AC_controls_and_biobanks_mid_XY=0;AN_controls_and_biobanks_mid_XY=112;AF_controls_and_biobanks_mid_XY=0.00000;nhomalt_controls_and_biobanks_mid_XY=0;AC_fin_XY=0;AN_fin_XY=8032;AF_fin_XY=0.00000;nhomalt_fin_XY=0;AC_non_topmed_nfe=0;AN_non_topmed_nfe=21044;AF_non_topmed_nfe=0.00000;nhomalt_non_topmed_nfe=0;AC_amr=26;AN_amr=15270;AF_amr=0.00170269;nhomalt_amr=0;AC_non_neuro_ami=0;AN_non_neuro_ami=862;AF_non_neuro_ami=0.00000;nhomalt_non_neuro_ami=0;AC_non_cancer_nfe_XX=2;AN_non_cancer_nfe_XX=38076;AF_non_cancer_nfe_XX=5.25265e-05;nhomalt_non_cancer_nfe_XX=0;AC_non_cancer_mid=0;AN_non_cancer_mid=304;AF_non_cancer_mid=0.00000;nhomalt_non_cancer_mid=0;AC_non_v2_mid_XY=0;AN_non_v2_mid_XY=146;AF_non_v2_mid_XY=0.00000;nhomalt_non_v2_mid_XY=0;AC_controls_and_biobanks_amr_XY=4;AN_controls_and_biobanks_amr_XY=2210;AF_controls_and_biobanks_amr_XY=0.00180995;nhomalt_controls_and_biobanks_amr_XY=0;AC_non_cancer_ami_XY=0;AN_non_cancer_ami_XY=442;AF_non_cancer_ami_XY=0.00000;nhomalt_non_cancer_ami_XY=0;AC_non_neuro_asj_XX=0;AN_non_neuro_asj_XX=1830;AF_non_neuro_asj_XX=0.00000;nhomalt_non_neuro_asj_XX=0;AC_afr=753;AN_afr=41434;AF_afr=0.0181735;nhomalt_afr=8;AC_non_v2_sas_XX=0;AN_non_v2_sas_XX=792;AF_non_v2_sas_XX=0.00000;nhomalt_non_v2_sas_XX=0;AC_non_neuro_afr_XX=367;AN_non_neuro_afr_XX=18728;AF_non_neuro_afr_XX=0.0195963;nhomalt_non_neuro_afr_XX=4;AC_non_cancer_sas=2;AN_non_cancer_sas=4800;AF_non_cancer_sas=0.000416667;nhomalt_non_cancer_sas=0;AC_non_topmed_fin=0;AN_non_topmed_fin=10514;AF_non_topmed_fin=0.00000;nhomalt_non_topmed_fin=0;AC_non_cancer_asj_XY=0;AN_non_cancer_asj_XY=1558;AF_non_cancer_asj_XY=0.00000;nhomalt_non_cancer_asj_XY=0;AC_non_cancer_mid_XY=0;AN_non_cancer_mid_XY=144;AF_non_cancer_mid_XY=0.00000;nhomalt_non_cancer_mid_XY=0;AC_raw=789;AN_raw=152266;AF_raw=0.00518172;nhomalt_raw=8;AC_non_topmed_XX=245;AN_non_topmed_XX=32816;AF_non_topmed_XX=0.00746587;nhomalt_non_topmed_XX=3;AC_ami_XX=0;AN_ami_XX=468;AF_ami_XX=0.00000;nhomalt_ami_XX=0;AC_eas_XY=0;AN_eas_XY=2920;AF_eas_XY=0.00000;nhomalt_eas_XY=0;AC_controls_and_biobanks_mid=0;AN_controls_and_biobanks_mid=246;AF_controls_and_biobanks_mid=0.00000;nhomalt_controls_and_biobanks_mid=0;AC_non_v2_nfe_XY=1;AN_non_v2_nfe_XY=20176;AF_non_v2_nfe_XY=4.95638e-05;nhomalt_non_v2_nfe_XY=0;AC_controls_and_biobanks_sas=2;AN_controls_and_biobanks_sas=3114;AF_controls_and_biobanks_sas=0.000642261;nhomalt_controls_and_biobanks_sas=0;AC_non_v2_eas=0;AN_non_v2_eas=2828;AF_non_v2_eas=0.00000;nhomalt_non_v2_eas=0;AC_mid=0;AN_mid=316;AF_mid=0.00000;nhomalt_mid=0;AC_oth_XY=3;AN_oth_XY=1058;AF_oth_XY=0.00283554;nhomalt_oth_XY=0;AC_non_cancer_nfe=3;AN_non_cancer_nfe=64808;AF_non_cancer_nfe=4.62906e-05;nhomalt_non_cancer_nfe=0;AC_non_neuro_eas_XX=0;AN_non_neuro_eas_XX=2280;AF_non_neuro_eas_XX=0.00000;nhomalt_non_neuro_eas_XX=0;AC_non_neuro_sas_XY=2;AN_non_neuro_sas_XY=3664;AF_non_neuro_sas_XY=0.000545852;nhomalt_non_neuro_sas_XY=0;AC_non_cancer_ami_XX=0;AN_non_cancer_ami_XX=468;AF_non_cancer_ami_XX=0.00000;nhomalt_non_cancer_ami_XX=0;AC_mid_XX=0;AN_mid_XX=164;AF_mid_XX=0.00000;nhomalt_mid_XX=0;AC_non_topmed_asj=0;AN_non_topmed_asj=996;AF_non_topmed_asj=0.00000;nhomalt_non_topmed_asj=0;AC_non_v2_asj_XX=0;AN_non_v2_asj_XX=1686;AF_non_v2_asj_XX=0.00000;nhomalt_non_v2_asj_XX=0;nhomalt=8;AC_non_v2_amr_XY=10;AN_non_v2_amr_XY=7710;AF_non_v2_amr_XY=0.00129702;nhomalt_non_v2_amr_XY=0;AC_non_cancer_amr_XX=14;AN_non_cancer_amr_XX=6732;AF_non_cancer_amr_XX=0.00207962;nhomalt_non_cancer_amr_XX=0;AC_controls_and_biobanks_afr_XX=101;AN_controls_and_biobanks_afr_XX=4712;AF_controls_and_biobanks_afr_XX=0.0214346;nhomalt_controls_and_biobanks_afr_XX=3;AC_asj=0;AN_asj=3470;AF_asj=0.00000;nhomalt_asj=0;AC_non_topmed_asj_XY=0;AN_non_topmed_asj_XY=718;AF_non_topmed_asj_XY=0.00000;nhomalt_non_topmed_asj_XY=0;AC_non_v2_fin_XX=0;AN_non_v2_fin_XX=1202;AF_non_v2_fin_XX=0.00000;nhomalt_non_v2_fin_XX=0;AC_non_topmed_ami=0;AN_non_topmed_ami=110;AF_non_topmed_ami=0.00000;nhomalt_non_topmed_ami=0;AC_controls_and_biobanks_eas_XX=0;AN_controls_and_biobanks_eas_XX=1028;AF_controls_and_biobanks_eas_XX=0.00000;nhomalt_controls_and_biobanks_eas_XX=0;AC_controls_and_biobanks_fin_XX=0;AN_controls_and_biobanks_fin_XX=490;AF_controls_and_biobanks_fin_XX=0.00000;nhomalt_controls_and_biobanks_fin_XX=0;AC_non_topmed_raw=489;AN_non_topmed_raw=80820;AF_non_topmed_raw=0.00605048;nhomalt_non_topmed_raw=6;AC_non_cancer_eas_XY=0;AN_non_cancer_eas_XY=2788;AF_non_cancer_eas_XY=0.00000;nhomalt_non_cancer_eas_XY=0;AC_non_cancer=784;AN_non_cancer=147910;AF_non_cancer=0.00530052;nhomalt_non_cancer=8;AC_controls_and_biobanks_ami_XY=0;AN_controls_and_biobanks_ami_XY=30;AF_controls_and_biobanks_ami_XY=0.00000;nhomalt_controls_and_biobanks_ami_XY=0;AC_controls_and_biobanks_mid_XX=0;AN_controls_and_biobanks_mid_XX=134;AF_controls_and_biobanks_mid_XX=0.00000;nhomalt_controls_and_biobanks_mid_XX=0;AC_non_v2_afr_XY=227;AN_non_v2_afr_XY=12902;AF_non_v2_afr_XY=0.0175942;nhomalt_non_v2_afr_XY=4;AC_non_v2_sas_XY=2;AN_non_v2_sas_XY=3094;AF_non_v2_sas_XY=0.000646412;nhomalt_non_v2_sas_XY=0;AC_non_v2_fin=0;AN_non_v2_fin=7298;AF_non_v2_fin=0.00000;nhomalt_non_v2_fin=0;AC_non_neuro_oth=5;AN_non_neuro_oth=2000;AF_non_neuro_oth=0.00250000;nhomalt_non_neuro_oth=0;AC_non_cancer_sas_XX=0;AN_non_cancer_sas_XX=1148;AF_non_cancer_sas_XX=0.00000;nhomalt_non_cancer_sas_XX=0;AC_non_neuro_asj=0;AN_non_neuro_asj=3386;AF_non_neuro_asj=0.00000;nhomalt_non_neuro_asj=0;AC_non_topmed_afr=460;AN_non_topmed_afr=24810;AF_non_topmed_afr=0.0185409;nhomalt_non_topmed_afr=6;AC_non_topmed_afr_XY=229;AN_non_topmed_afr_XY=12884;AF_non_topmed_afr_XY=0.0177740;nhomalt_non_topmed_afr_XY=3;AC_non_neuro_eas=0;AN_non_neuro_eas=5200;AF_non_neuro_eas=0.00000;nhomalt_non_neuro_eas=0;AC_afr_XX=417;AN_afr_XX=22144;AF_afr_XX=0.0188313;nhomalt_afr_XX=4;AC_non_neuro_mid_XY=0;AN_non_neuro_mid_XY=146;AF_non_neuro_mid_XY=0.00000;nhomalt_non_neuro_mid_XY=0;AC_non_topmed_fin_XX=0;AN_non_topmed_fin_XX=2516;AF_non_topmed_fin_XX=0.00000;nhomalt_non_topmed_fin_XX=0;AC_non_cancer_amr=26;AN_non_cancer_amr=15084;AF_non_cancer_amr=0.00172368;nhomalt_non_cancer_amr=0;AC_non_v2_ami_XX=0;AN_non_v2_ami_XX=468;AF_non_v2_ami_XX=0.00000;nhomalt_non_v2_ami_XX=0;AC_afr_XY=336;AN_afr_XY=19290;AF_afr_XY=0.0174184;nhomalt_afr_XY=4;AC_non_v2_mid_XX=0;AN_non_v2_mid_XX=162;AF_non_v2_mid_XX=0.00000;nhomalt_non_v2_mid_XX=0;AC_non_topmed_fin_XY=0;AN_non_topmed_fin_XY=7998;AF_non_topmed_fin_XY=0.00000;nhomalt_non_topmed_fin_XY=0;AC_non_neuro_amr_XY=11;AN_non_neuro_amr_XY=8232;AF_non_neuro_amr_XY=0.00133625;nhomalt_non_neuro_amr_XY=0;AC_non_topmed_mid_XX=0;AN_non_topmed_mid_XX=142;AF_non_topmed_mid_XX=0.00000;nhomalt_non_topmed_mid_XX=0;AC_controls_and_biobanks_asj_XY=0;AN_controls_and_biobanks_asj_XY=52;AF_controls_and_biobanks_asj_XY=0.00000;nhomalt_controls_and_biobanks_asj_XY=0;AC_non_v2_fin_XY=0;AN_non_v2_fin_XY=6096;AF_non_v2_fin_XY=0.00000;nhomalt_non_v2_fin_XY=0;AC_controls_and_biobanks_ami_XX=0;AN_controls_and_biobanks_ami_XX=30;AF_controls_and_biobanks_ami_XX=0.00000;nhomalt_controls_and_biobanks_ami_XX=0;AC_eas_XX=0;AN_eas_XX=2280;AF_eas_XX=0.00000;nhomalt_eas_XX=0;AC_non_cancer_amr_XY=12;AN_non_cancer_amr_XY=8352;AF_non_cancer_amr_XY=0.00143678;nhomalt_non_cancer_amr_XY=0;AC_non_neuro_ami_XX=0;AN_non_neuro_ami_XX=432;AF_non_neuro_ami_XX=0.00000;nhomalt_non_neuro_ami_XX=0;AC_controls_and_biobanks=184;AN_controls_and_biobanks=32874;AF_controls_and_biobanks=0.00559713;nhomalt_controls_and_biobanks=5;AC_controls_and_biobanks_oth=2;AN_controls_and_biobanks_oth=786;AF_controls_and_biobanks_oth=0.00254453;nhomalt_controls_and_biobanks_oth=0;AC_nfe_XY=1;AN_nfe_XY=28678;AF_nfe_XY=3.48699e-05;nhomalt_nfe_XY=0;AC_non_cancer_afr_XX=415;AN_non_cancer_afr_XX=21984;AF_non_cancer_afr_XX=0.0188774;nhomalt_non_cancer_afr_XX=4;AC_controls_and_biobanks_sas_XY=2;AN_controls_and_biobanks_sas_XY=2272;AF_controls_and_biobanks_sas_XY=0.000880282;nhomalt_controls_and_biobanks_sas_XY=0;AC_non_cancer_oth=4;AN_non_cancer_oth=2020;AF_non_cancer_oth=0.00198020;nhomalt_non_cancer_oth=0;AC_non_topmed_oth=5;AN_non_topmed_oth=1516;AF_non_topmed_oth=0.00329815;nhomalt_non_topmed_oth=0;AC_non_topmed_nfe_XY=0;AN_non_topmed_nfe_XY=11722;AF_non_topmed_nfe_XY=0.00000;nhomalt_non_topmed_nfe_XY=0;AC_non_topmed_sas_XX=0;AN_non_topmed_sas_XX=1160;AF_non_topmed_sas_XX=0.00000;nhomalt_non_topmed_sas_XX=0;AC_non_v2_nfe=3;AN_non_v2_nfe=51960;AF_non_v2_nfe=5.77367e-05;nhomalt_non_v2_nfe=0;AC_non_topmed_oth_XX=2;AN_non_topmed_oth_XX=688;AF_non_topmed_oth_XX=0.00290698;nhomalt_non_topmed_oth_XX=0;AC_non_cancer_mid_XX=0;AN_non_cancer_mid_XX=160;AF_non_cancer_mid_XX=0.00000;nhomalt_non_cancer_mid_XX=0;AC_controls_and_biobanks_nfe=0;AN_controls_and_biobanks_nfe=6852;AF_controls_and_biobanks_nfe=0.00000;nhomalt_controls_and_biobanks_nfe=0;AC_controls_and_biobanks_oth_XY=1;AN_controls_and_biobanks_oth_XY=420;AF_controls_and_biobanks_oth_XY=0.00238095;nhomalt_controls_and_biobanks_oth_XY=0;AC_controls_and_biobanks_fin_XY=0;AN_controls_and_biobanks_fin_XY=4986;AF_controls_and_biobanks_fin_XY=0.00000;nhomalt_controls_and_biobanks_fin_XY=0;AC_non_v2_amr_XX=12;AN_non_v2_amr_XX=6022;AF_non_v2_amr_XX=0.00199269;nhomalt_non_v2_amr_XX=0;AC_non_cancer_asj=0;AN_non_cancer_asj=3302;AF_non_cancer_asj=0.00000;nhomalt_non_cancer_asj=0;AC_non_cancer_oth_XX=2;AN_non_cancer_oth_XX=1008;AF_non_cancer_oth_XX=0.00198413;nhomalt_non_cancer_oth_XX=0;AC_non_neuro_amr=25;AN_non_neuro_amr=14824;AF_non_neuro_amr=0.00168645;nhomalt_non_neuro_amr=0;AC_non_cancer_XX=433;AN_non_cancer_XX=76070;AF_non_cancer_XX=0.00569213;nhomalt_non_cancer_XX=4;AC_non_v2_ami_XY=0;AN_non_v2_ami_XY=440;AF_non_v2_ami_XY=0.00000;nhomalt_non_v2_ami_XY=0;AC_non_neuro_raw=628;AN_non_neuro_raw=134842;AF_non_neuro_raw=0.00465730;nhomalt_non_neuro_raw=7;AC_non_neuro_afr=593;AN_non_neuro_afr=32468;AF_non_neuro_afr=0.0182641;nhomalt_non_neuro_afr=7;AC_non_topmed_ami_XY=0;AN_non_topmed_ami_XY=44;AF_non_topmed_ami_XY=0.00000;nhomalt_non_topmed_ami_XY=0;AC_non_neuro_oth_XY=3;AN_non_neuro_oth_XY=1004;AF_non_neuro_oth_XY=0.00298805;nhomalt_non_neuro_oth_XY=0;AC_non_neuro_oth_XX=2;AN_non_neuro_oth_XX=996;AF_non_neuro_oth_XX=0.00200803;nhomalt_non_neuro_oth_XX=0;AC_controls_and_biobanks_XX=107;AN_controls_and_biobanks_XX=13422;AF_controls_and_biobanks_XX=0.00797199;nhomalt_controls_and_biobanks_XX=3;AC_non_cancer_afr_XY=334;AN_non_cancer_afr_XY=19128;AF_non_cancer_afr_XY=0.0174613;nhomalt_non_cancer_afr_XY=4;AC_non_cancer_fin=0;AN_non_cancer_fin=10606;AF_non_cancer_fin=0.00000;nhomalt_non_cancer_fin=0;AC_controls_and_biobanks_asj=0;AN_controls_and_biobanks_asj=136;AF_controls_and_biobanks_asj=0.00000;nhomalt_controls_and_biobanks_asj=0;AC_non_topmed_oth_XY=3;AN_non_topmed_oth_XY=828;AF_non_topmed_oth_XY=0.00362319;nhomalt_non_topmed_oth_XY=0;AC_non_neuro_mid_XX=0;AN_non_neuro_mid_XX=164;AF_non_neuro_mid_XX=0.00000;nhomalt_non_neuro_mid_XX=0;AC_controls_and_biobanks_oth_XX=1;AN_controls_and_biobanks_oth_XX=366;AF_controls_and_biobanks_oth_XX=0.00273224;nhomalt_controls_and_biobanks_oth_XX=0;AC_non_neuro_XY=243;AN_non_neuro_XY=64264;AF_non_neuro_XY=0.00378128;nhomalt_non_neuro_XY=3;AC_nfe=3;AN_nfe=68032;AF_nfe=4.40969e-05;nhomalt_nfe=0;AC_popmax=753;AN_popmax=41434;AF_popmax=0.0181735;nhomalt_popmax=8;faf95_sas=7.28500e-05;faf99_sas=3.02700e-05;faf95_eas=0.00000;faf99_eas=0.00000;faf95_amr=0.00119270;faf99_amr=0.00102263;faf95_afr=0.0170978;faf99_afr=0.0166681;faf95=0.00488495;faf99=0.00476474;faf95_nfe=1.17100e-05;faf99_nfe=6.25000e-06;age_hist_het_bin_freq=18|12|28|35|35|34|36|33|18|11;age_hist_het_n_smaller=76;age_hist_het_n_larger=4;age_hist_hom_bin_freq=0|0|0|0|1|0|0|1|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;FS=1.44649e-15;MQ=59.9985;MQRankSum=-0.0420000;QD=13.9740;ReadPosRankSum=0.325000;VarDP=43797;QUALapprox=612021;AS_FS=1.44649e-15;AS_MQ=59.9985;AS_MQRankSum=-0.0370000;AS_pab_max=1.00000;AS_QD=13.9740;AS_ReadPosRankSum=0.319000;AS_SOR=0.717572;InbreedingCoeff=0.0151757;AS_SB_TABLE=11138,10561|11476,10622;AS_VQSLOD=21.6344;AS_culprit=AS_MQ;POSITIVE_TRAIN_SITE;allele_type=snv;n_alt_alleles=1;variant_type=snv;gq_hist_alt_bin_freq=0|0|0|0|0|1|0|0|0|0|0|0|1|0|0|2|1|1|1|774;gq_hist_all_bin_freq=0|0|0|0|24239|16018|10307|6831|5691|3967|2763|1966|1374|852|512|314|196|102|68|880;dp_hist_alt_bin_freq=0|0|6|55|133|166|141|113|85|57|17|5|2|0|0|0|1|0|0|0;dp_hist_alt_n_larger=0;dp_hist_all_bin_freq=0|0|132|1674|7062|12872|33425|17904|2016|473|249|112|79|41|14|13|3|4|1|3;dp_hist_all_n_smaller=0;dp_hist_all_n_larger=3;ab_hist_alt_bin_freq=0|0|0|0|2|12|28|56|124|127|181|130|60|41|7|4|1|0|0|0;cadd_raw_score=6.91849;cadd_phred=36.0000;splice_ai_max_ds=0.0100000;splice_ai_consequence=donor_loss;vep=T|stop_gained|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000265379|protein_coding|8/43||ENST00000265379.10:c.3550C>T|ENSP00000265379.7:p.Gln1184Ter|4044|3550|1184|Q/*|Cag/Tag|1||1|SNV||HGNC|HGNC:26674|YES|5|P1||ENSP00000265379|||||||Gene3D:3&PANTHER:PTHR22588&PANTHER:PTHR22588&Superfamily:SSF53300||||||HC|||PERCENTILE:0.453037263910158,GERP_DIST:-5165.26902042828,BP_DIST:5061,DIST_FROM_LAST_EXON:5033,50_BP_RULE:PASS,ANN_ORF:1280.34,MAX_ORF:1280.34,T|stop_gained&NMD_transcript_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000312481|nonsense_mediated_decay|8/42||ENST00000312481.11:c.3550C>T|ENSP00000309762.7:p.Gln1184Ter|4044|3550|1184|Q/*|Cag/Tag|1||1|SNV||HGNC|HGNC:26674||1|||ENSP00000309762||||||||||||||||,T|stop_gained|HIGH|COL6A5|256076|Transcript|NM_001278298.1|protein_coding|8/41||NM_001278298.1:c.3550C>T|NP_001265227.1:p.Gln1184Ter|4044|3550|1184|Q/*|Cag/Tag|1||1|SNV||EntrezGene|HGNC:26674|||||NP_001265227.1|||||||||||||HC|||PERCENTILE:0.452517527087317,GERP_DIST:-3047.47523648269,BP_DIST:4262,DIST_FROM_LAST_EXON:4237,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|COL6A5|256076|Transcript|NM_153264.6|protein_coding|8/40||NM_153264.6:c.3550C>T|NP_694996.5:p.Gln1184Ter|4044|3550|1184|Q/*|Cag/Tag|1||1|SNV||EntrezGene|HGNC:26674|||||NP_694996.5|||||||||||||HC|||PERCENTILE:0.468275953040496,GERP_DIST:-2735.58170950688,BP_DIST:3999,DIST_FROM_LAST_EXON:3993,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|non_coding_transcript_exon_variant|MODIFIER|COL6A5|256076|Transcript|NR_022012.2|misc_RNA|8/42||NR_022012.2:n.4044C>T||4044|||||1||1|SNV||EntrezGene|HGNC:26674|YES||||||||||||||||||||,T|stop_gained|HIGH|COL6A5|256076|Transcript|XM_011512621.2|protein_coding|8/41||XM_011512621.2:c.3550C>T|XP_011510923.1:p.Gln1184Ter|3918|3550|1184|Q/*|Cag/Tag|1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510923.1|||||||||||||HC|||PERCENTILE:0.456005138086063,GERP_DIST:-3151.82136652074,BP_DIST:4289,DIST_FROM_LAST_EXON:4261,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|COL6A5|256076|Transcript|XM_011512622.2|protein_coding|8/30||XM_011512622.2:c.3550C>T|XP_011510924.1:p.Gln1184Ter|3918|3550|1184|Q/*|Cag/Tag|1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510924.1|||||||||||||HC|||PERCENTILE:0.659973972857408,GERP_DIST:-1650.3869297897,BP_DIST:1807,DIST_FROM_LAST_EXON:1592,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|COL6A5|256076|Transcript|XM_011512623.2|protein_coding|8/33||XM_011512623.2:c.3550C>T|XP_011510925.1:p.Gln1184Ter|3918|3550|1184|Q/*|Cag/Tag|1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510925.1|||||||||||||HC|||PERCENTILE:0.675804302303446,GERP_DIST:-1206.769026765,BP_DIST:1678,DIST_FROM_LAST_EXON:1674,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000700709|promoter_flanking_region||||||||||1|||SNV|||||||||||||||||||||||| +chr3 130405586 rs373650908 A G . PASS 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lt_popmax=1;faf95_sas=0.00000;faf99_sas=0.00000;faf95_eas=0.000157170;faf99_eas=8.40400e-05;faf95_amr=0.00000;faf99_amr=0.00000;faf95_afr=0.00000;faf99_afr=0.00000;faf95=5.25000e-06;faf99=2.46000e-06;faf95_nfe=0.00000;faf99_nfe=0.00000;age_hist_het_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_het_n_smaller=0;age_hist_het_n_larger=0;age_hist_hom_bin_freq=0|0|0|0|0|0|0|0|0|1;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;FS=0.532956;MQ=60.0000;MQRankSum=-0.0150000;QD=18.0273;ReadPosRankSum=1.07300;VarDP=770;QUALapprox=13881;AS_FS=0.532956;AS_MQ=60.0000;AS_MQRankSum=-0.0150000;AS_pab_max=0.902159;AS_QD=18.0273;AS_ReadPosRankSum=1.07300;AS_SOR=0.622117;InbreedingCoeff=0.666660;AS_SB_TABLE=156,143|237,234;AS_VQSLOD=5.67580;AS_culprit=AS_MQ;allele_type=snv;n_alt_alleles=1;variant_type=snv;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|2;gq_hist_all_bin_freq=0|0|0|0|6766|7387|6630|5998|7271|6291|5757|6295|5148|4306|3946|2848|2331|1586|1109|2338;dp_hist_alt_bin_freq=0|0|0|0|0|0|0|1|1|0|0|0|0|0|0|0|0|0|0|0;dp_hist_alt_n_larger=0;dp_hist_all_bin_freq=0|0|446|3980|9305|14424|24935|16019|4390|1242|700|314|120|50|28|22|7|2|5|2;dp_hist_all_n_smaller=0;dp_hist_all_n_larger=16;ab_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|1|0|0|0|0|0|0|0|0;cadd_raw_score=5.50192;cadd_phred=34.0000;splice_ai_max_ds=0.990000;splice_ai_consequence=acceptor_loss;vep=G|splice_acceptor_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000265379|protein_coding||13/42|ENST00000265379.10:c.4282-2A>G|||||||1||1|SNV||HGNC|HGNC:26674|YES|5|P1||ENSP00000265379|||||||||||||HC|||INTRON_SIZE:1925,G|splice_acceptor_variant&NMD_transcript_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000312481|nonsense_mediated_decay||13/41|ENST00000312481.11:c.4282-2A>G|||||||1||1|SNV||HGNC|HGNC:26674||1|||ENSP00000309762||||||||||||||||,G|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|NM_001278298.1|protein_coding||13/40|NM_001278298.1:c.4282-2A>G|||||||1||1|SNV||EntrezGene|HGNC:26674|||||NP_001265227.1|||||||||||||HC|||INTRON_SIZE:1925,G|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|NM_153264.6|protein_coding||13/39|NM_153264.6:c.4282-2A>G|||||||1||1|SNV||EntrezGene|HGNC:26674|||||NP_694996.5|||||||||||||HC|||INTRON_SIZE:1925,G|splice_acceptor_variant&non_coding_transcript_variant|HIGH|COL6A5|256076|Transcript|NR_022012.2|misc_RNA||13/41|NR_022012.2:n.4776-2A>G|||||||1||1|SNV||EntrezGene|HGNC:26674|YES||||||||||||||||||||,G|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|XM_011512621.2|protein_coding||13/40|XM_011512621.2:c.4282-2A>G|||||||1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510923.1|||||||||||||HC|||INTRON_SIZE:1925,G|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|XM_011512622.2|protein_coding||13/29|XM_011512622.2:c.4282-2A>G|||||||1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510924.1|||||||||||||HC|||INTRON_SIZE:1925,G|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|XM_011512623.2|protein_coding||13/32|XM_011512623.2:c.4282-2A>G|||||||1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510925.1|||||||||||||HC|||INTRON_SIZE:1925 +chr3 130413557 rs190283135 C T . PASS 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s=0;AC_XX=122;AN_XX=77540;AF_XX=0.00157338;nhomalt_XX=1;AC_non_cancer_oth_XY=1;AN_non_cancer_oth_XY=1004;AF_non_cancer_oth_XY=0.000996016;nhomalt_non_cancer_oth_XY=0;AC_non_v2_XY=65;AN_non_v2_XY=54138;AF_non_v2_XY=0.00120064;nhomalt_non_v2_XY=0;AC_non_topmed_amr_XX=21;AN_non_topmed_amr_XX=5294;AF_non_topmed_amr_XX=0.00396675;nhomalt_non_topmed_amr_XX=1;AC_fin=1;AN_fin=10554;AF_fin=9.47508e-05;nhomalt_fin=0;AC_controls_and_biobanks_nfe_XX=6;AN_controls_and_biobanks_nfe_XX=3246;AF_controls_and_biobanks_nfe_XX=0.00184843;nhomalt_controls_and_biobanks_nfe_XX=0;AC_controls_and_biobanks_afr=7;AN_controls_and_biobanks_afr=9070;AF_controls_and_biobanks_afr=0.000771775;nhomalt_controls_and_biobanks_afr=0;AC_asj_XX=0;AN_asj_XX=1858;AF_asj_XX=0.00000;nhomalt_asj_XX=0;AC_non_topmed_mid=0;AN_non_topmed_mid=270;AF_non_topmed_mid=0.00000;nhomalt_non_topmed_mid=0;AC_non_cancer_sas_XY=0;AN_non_cancer_sas_XY=3614;AF_non_cancer_sas_XY=0.00000;nhomalt_non_cancer_sas_XY=0;AC_sas_XX=0;AN_sas_XX=1160;AF_sas_XX=0.00000;nhomalt_sas_XX=0;AC_non_topmed=96;AN_non_topmed=80316;AF_non_topmed=0.00119528;nhomalt_non_topmed=1;AC_non_v2_oth_XX=6;AN_non_v2_oth_XX=928;AF_non_v2_oth_XX=0.00646552;nhomalt_non_v2_oth_XX=0;AC_non_neuro_ami_XY=0;AN_non_neuro_ami_XY=428;AF_non_neuro_ami_XY=0.00000;nhomalt_non_neuro_ami_XY=0;AC_controls_and_biobanks_afr_XY=2;AN_controls_and_biobanks_afr_XY=4370;AF_controls_and_biobanks_afr_XY=0.000457666;nhomalt_controls_and_biobanks_afr_XY=0;AC_controls_and_biobanks_amr_XX=15;AN_controls_and_biobanks_amr_XX=2476;AF_controls_and_biobanks_amr_XX=0.00605816;nhomalt_controls_and_biobanks_amr_XX=1;AC_non_topmed_amr=41;AN_non_topmed_amr=12844;AF_non_topmed_amr=0.00319215;nhomalt_non_topmed_amr=1;AC_controls_and_biobanks_sas_XX=0;AN_controls_and_biobanks_sas_XX=842;AF_controls_and_biobanks_sas_XX=0.00000;nhomalt_controls_and_biobanks_sas_XX=0;AC_controls_and_biobanks_amr=20;AN_controls_and_biobanks_amr=4676;AF_controls_and_biobanks_amr=0.00427716;nhomalt_controls_and_biobanks_amr=1;AC_non_neuro_fin_XX=0;AN_non_neuro_fin_XX=650;AF_non_neuro_fin_XX=0.00000;nhomalt_non_neuro_fin_XX=0;AC_non_cancer_raw=203;AN_non_cancer_raw=147952;AF_non_cancer_raw=0.00137207;nhomalt_non_cancer_raw=1;AC_non_neuro_mid=0;AN_non_neuro_mid=308;AF_non_neuro_mid=0.00000;nhomalt_non_neuro_mid=0;AC_non_v2_asj_XY=0;AN_non_v2_asj_XY=1384;AF_non_v2_asj_XY=0.00000;nhomalt_non_v2_asj_XY=0;AC_non_v2_afr=11;AN_non_v2_afr=28634;AF_non_v2_afr=0.000384159;nhomalt_non_v2_afr=0;AC_non_neuro_fin_XY=0;AN_non_neuro_fin_XY=6280;AF_non_neuro_fin_XY=0.00000;nhomalt_non_neuro_fin_XY=0;AC_non_cancer_afr=14;AN_non_cancer_afr=41020;AF_non_cancer_afr=0.000341297;nhomalt_non_cancer_afr=0;AC_non_topmed_sas_XY=0;AN_non_topmed_sas_XY=3606;AF_non_topmed_sas_XY=0.00000;nhomalt_non_topmed_sas_XY=0;AC_mid_XY=0;AN_mid_XY=152;AF_mid_XY=0.00000;nhomalt_mid_XY=0;AC_non_v2_oth_XY=1;AN_non_v2_oth_XY=920;AF_non_v2_oth_XY=0.00108696;nhomalt_non_v2_oth_XY=0;AC_controls_and_biobanks_fin=0;AN_controls_and_biobanks_fin=5454;AF_controls_and_biobanks_fin=0.00000;nhomalt_controls_and_biobanks_fin=0;AC_non_neuro_eas_XY=0;AN_non_neuro_eas_XY=2908;AF_non_neuro_eas_XY=0.00000;nhomalt_non_neuro_eas_XY=0;AC_non_topmed_eas_XX=0;AN_non_topmed_eas_XX=1400;AF_non_topmed_eas_XX=0.00000;nhomalt_non_topmed_eas_XX=0;AC_non_v2_afr_XX=7;AN_non_v2_afr_XX=15772;AF_non_v2_afr_XX=0.000443824;nhomalt_non_v2_afr_XX=0;AC_non_neuro_amr_XX=31;AN_non_neuro_amr_XX=6570;AF_non_neuro_amr_XX=0.00471842;nhomalt_non_neuro_amr_XX=1;AC_non_cancer_ami=0;AN_non_cancer_ami=910;AF_non_cancer_ami=0.00000;nhomalt_non_cancer_ami=0;AC_XY=87;AN_XY=74022;AF_XY=0.00117533;nhomalt_XY=0;AC_non_topmed_asj_XX=0;AN_non_topmed_asj_XX=278;AF_non_topmed_asj_XX=0.00000;nhomalt_non_topmed_asj_XX=0;AC_non_topmed_eas_XY=0;AN_non_topmed_eas_XY=2340;AF_non_topmed_eas_XY=0.00000;nhomalt_non_topmed_eas_XY=0;AC_non_v2_eas_XY=0;AN_non_v2_eas_XY=1498;AF_non_v2_eas_XY=0.00000;nhomalt_non_v2_eas_XY=0;AC_eas=0;AN_eas=5182;AF_eas=0.00000;nhomalt_eas=0;AC_asj_XY=0;AN_asj_XY=1600;AF_asj_XY=0.00000;nhomalt_asj_XY=0;AC_non_v2_eas_XX=0;AN_non_v2_eas_XX=1304;AF_non_v2_eas_XX=0.00000;nhomalt_non_v2_eas_XX=0;AC_controls_and_biobanks_mid_XY=0;AN_controls_and_biobanks_mid_XY=112;AF_controls_and_biobanks_mid_XY=0.00000;nhomalt_controls_and_biobanks_mid_XY=0;AC_fin_XY=1;AN_fin_XY=7996;AF_fin_XY=0.000125063;nhomalt_fin_XY=0;AC_non_topmed_nfe=37;AN_non_topmed_nfe=20904;AF_non_topmed_nfe=0.00177000;nhomalt_non_topmed_nfe=0;AC_amr=56;AN_amr=15212;AF_amr=0.00368130;nhomalt_amr=1;AC_non_neuro_ami=0;AN_non_neuro_ami=860;AF_non_neuro_ami=0.00000;nhomalt_non_neuro_ami=0;AC_non_cancer_nfe_XX=71;AN_non_cancer_nfe_XX=37894;AF_non_cancer_nfe_XX=0.00187365;nhomalt_non_cancer_nfe_XX=0;AC_non_cancer_mid=0;AN_non_cancer_mid=302;AF_non_cancer_mid=0.00000;nhomalt_non_cancer_mid=0;AC_non_v2_mid_XY=0;AN_non_v2_mid_XY=146;AF_non_v2_mid_XY=0.00000;nhomalt_non_v2_mid_XY=0;AC_controls_and_biobanks_amr_XY=5;AN_controls_and_biobanks_amr_XY=2200;AF_controls_and_biobanks_amr_XY=0.00227273;nhomalt_controls_and_biobanks_amr_XY=0;AC_non_cancer_ami_XY=0;AN_non_cancer_ami_XY=440;AF_non_cancer_ami_XY=0.00000;nhomalt_non_cancer_ami_XY=0;AC_non_neuro_asj_XX=0;AN_non_neuro_asj_XX=1824;AF_non_neuro_asj_XX=0.00000;nhomalt_non_neuro_asj_XX=0;AC_afr=15;AN_afr=41342;AF_afr=0.000362827;nhomalt_afr=0;AC_non_v2_sas_XX=0;AN_non_v2_sas_XX=786;AF_non_v2_sas_XX=0.00000;nhomalt_non_v2_sas_XX=0;AC_non_neuro_afr_XX=11;AN_non_neuro_afr_XX=18704;AF_non_neuro_afr_XX=0.000588109;nhomalt_non_neuro_afr_XX=0;AC_non_cancer_sas=0;AN_non_cancer_sas=4756;AF_non_cancer_sas=0.00000;nhomalt_non_cancer_sas=0;AC_non_topmed_fin=1;AN_non_topmed_fin=10462;AF_non_topmed_fin=9.55840e-05;nhomalt_non_topmed_fin=0;AC_non_cancer_asj_XY=0;AN_non_cancer_asj_XY=1554;AF_non_cancer_asj_XY=0.00000;nhomalt_non_cancer_asj_XY=0;AC_non_cancer_mid_XY=0;AN_non_cancer_mid_XY=144;AF_non_cancer_mid_XY=0.00000;nhomalt_non_cancer_mid_XY=0;AC_raw=209;AN_raw=152204;AF_raw=0.00137316;nhomalt_raw=1;AC_non_topmed_XX=55;AN_non_topmed_XX=32670;AF_non_topmed_XX=0.00168350;nhomalt_non_topmed_XX=1;AC_ami_XX=0;AN_ami_XX=470;AF_ami_XX=0.00000;nhomalt_ami_XX=0;AC_eas_XY=0;AN_eas_XY=2908;AF_eas_XY=0.00000;nhomalt_eas_XY=0;AC_controls_and_biobanks_mid=0;AN_controls_and_biobanks_mid=244;AF_controls_and_biobanks_mid=0.00000;nhomalt_controls_and_biobanks_mid=0;AC_non_v2_nfe_XY=38;AN_non_v2_nfe_XY=20086;AF_non_v2_nfe_XY=0.00189186;nhomalt_non_v2_nfe_XY=0;AC_controls_and_biobanks_sas=0;AN_controls_and_biobanks_sas=3094;AF_controls_and_biobanks_sas=0.00000;nhomalt_controls_and_biobanks_sas=0;AC_non_v2_eas=0;AN_non_v2_eas=2802;AF_non_v2_eas=0.00000;nhomalt_non_v2_eas=0;AC_mid=0;AN_mid=314;AF_mid=0.00000;nhomalt_mid=0;AC_oth_XY=1;AN_oth_XY=1050;AF_oth_XY=0.000952381;nhomalt_oth_XY=0;AC_non_cancer_nfe=125;AN_non_cancer_nfe=64506;AF_non_cancer_nfe=0.00193780;nhomalt_non_cancer_nfe=0;AC_non_neuro_eas_XX=0;AN_non_neuro_eas_XX=2274;AF_non_neuro_eas_XX=0.00000;nhomalt_non_neuro_eas_XX=0;AC_non_neuro_sas_XY=0;AN_non_neuro_sas_XY=3626;AF_non_neuro_sas_XY=0.00000;nhomalt_non_neuro_sas_XY=0;AC_non_cancer_ami_XX=0;AN_non_cancer_ami_XX=470;AF_non_cancer_ami_XX=0.00000;nhomalt_non_cancer_ami_XX=0;AC_mid_XX=0;AN_mid_XX=162;AF_mid_XX=0.00000;nhomalt_mid_XX=0;AC_non_topmed_asj=0;AN_non_topmed_asj=994;AF_non_topmed_asj=0.00000;nhomalt_non_topmed_asj=0;AC_non_v2_asj_XX=0;AN_non_v2_asj_XX=1680;AF_non_v2_asj_XX=0.00000;nhomalt_non_v2_asj_XX=0;nhomalt=1;AC_non_v2_amr_XY=21;AN_non_v2_amr_XY=7676;AF_non_v2_amr_XY=0.00273580;nhomalt_non_v2_amr_XY=0;AC_non_cancer_amr_XX=31;AN_non_cancer_amr_XX=6710;AF_non_cancer_amr_XX=0.00461997;nhomalt_non_cancer_amr_XX=1;AC_controls_and_biobanks_afr_XX=5;AN_controls_and_biobanks_afr_XX=4700;AF_controls_and_biobanks_afr_XX=0.00106383;nhomalt_controls_and_biobanks_afr_XX=0;AC_asj=0;AN_asj=3458;AF_asj=0.00000;nhomalt_asj=0;AC_non_topmed_asj_XY=0;AN_non_topmed_asj_XY=716;AF_non_topmed_asj_XY=0.00000;nhomalt_non_topmed_asj_XY=0;AC_non_v2_fin_XX=0;AN_non_v2_fin_XX=1190;AF_non_v2_fin_XX=0.00000;nhomalt_non_v2_fin_XX=0;AC_non_topmed_ami=0;AN_non_topmed_ami=110;AF_non_topmed_ami=0.00000;nhomalt_non_topmed_ami=0;AC_controls_and_biobanks_eas_XX=0;AN_controls_and_biobanks_eas_XX=1026;AF_controls_and_biobanks_eas_XX=0.00000;nhomalt_controls_and_biobanks_eas_XX=0;AC_controls_and_biobanks_fin_XX=0;AN_controls_and_biobanks_fin_XX=486;AF_controls_and_biobanks_fin_XX=0.00000;nhomalt_controls_and_biobanks_fin_XX=0;AC_non_topmed_raw=96;AN_non_topmed_raw=80790;AF_non_topmed_raw=0.00118827;nhomalt_non_topmed_raw=1;AC_non_cancer_eas_XY=0;AN_non_cancer_eas_XY=2776;AF_non_cancer_eas_XY=0.00000;nhomalt_non_cancer_eas_XY=0;AC_non_cancer=203;AN_non_cancer=147316;AF_non_cancer=0.00137799;nhomalt_non_cancer=1;AC_controls_and_biobanks_ami_XY=0;AN_controls_and_biobanks_ami_XY=30;AF_controls_and_biobanks_ami_XY=0.00000;nhomalt_controls_and_biobanks_ami_XY=0;AC_controls_and_biobanks_mid_XX=0;AN_controls_and_biobanks_mid_XX=132;AF_controls_and_biobanks_mid_XX=0.00000;nhomalt_controls_and_biobanks_mid_XX=0;AC_non_v2_afr_XY=4;AN_non_v2_afr_XY=12862;AF_non_v2_afr_XY=0.000310994;nhomalt_non_v2_afr_XY=0;AC_non_v2_sas_XY=0;AN_non_v2_sas_XY=3060;AF_non_v2_sas_XY=0.00000;nhomalt_non_v2_sas_XY=0;AC_non_v2_fin=1;AN_non_v2_fin=7256;AF_non_v2_fin=0.000137817;nhomalt_non_v2_fin=0;AC_non_neuro_oth=8;AN_non_neuro_oth=1990;AF_non_neuro_oth=0.00402010;nhomalt_non_neuro_oth=0;AC_non_cancer_sas_XX=0;AN_non_cancer_sas_XX=1142;AF_non_cancer_sas_XX=0.00000;nhomalt_non_cancer_sas_XX=0;AC_non_neuro_asj=0;AN_non_neuro_asj=3378;AF_non_neuro_asj=0.00000;nhomalt_non_neuro_asj=0;AC_non_topmed_afr=11;AN_non_topmed_afr=24726;AF_non_topmed_afr=0.000444876;nhomalt_non_topmed_afr=0;AC_non_topmed_afr_XY=3;AN_non_topmed_afr_XY=12838;AF_non_topmed_afr_XY=0.000233681;nhomalt_non_topmed_afr_XY=0;AC_non_neuro_eas=0;AN_non_neuro_eas=5182;AF_non_neuro_eas=0.00000;nhomalt_non_neuro_eas=0;AC_afr_XX=11;AN_afr_XX=22100;AF_afr_XX=0.000497738;nhomalt_afr_XX=0;AC_non_neuro_mid_XY=0;AN_non_neuro_mid_XY=146;AF_non_neuro_mid_XY=0.00000;nhomalt_non_neuro_mid_XY=0;AC_non_topmed_fin_XX=0;AN_non_topmed_fin_XX=2500;AF_non_topmed_fin_XX=0.00000;nhomalt_non_topmed_fin_XX=0;AC_non_cancer_amr=56;AN_non_cancer_amr=15026;AF_non_cancer_amr=0.00372687;nhomalt_non_cancer_amr=1;AC_non_v2_ami_XX=0;AN_non_v2_ami_XX=470;AF_non_v2_ami_XX=0.00000;nhomalt_non_v2_ami_XX=0;AC_afr_XY=4;AN_afr_XY=19242;AF_afr_XY=0.000207879;nhomalt_afr_XY=0;AC_non_v2_mid_XX=0;AN_non_v2_mid_XX=160;AF_non_v2_mid_XX=0.00000;nhomalt_non_v2_mid_XX=0;AC_non_topmed_fin_XY=1;AN_non_topmed_fin_XY=7962;AF_non_topmed_fin_XY=0.000125597;nhomalt_non_topmed_fin_XY=0;AC_non_neuro_amr_XY=24;AN_non_neuro_amr_XY=8198;AF_non_neuro_amr_XY=0.00292754;nhomalt_non_neuro_amr_XY=0;AC_non_topmed_mid_XX=0;AN_non_topmed_mid_XX=140;AF_non_topmed_mid_XX=0.00000;nhomalt_non_topmed_mid_XX=0;AC_controls_and_biobanks_asj_XY=0;AN_controls_and_biobanks_asj_XY=52;AF_controls_and_biobanks_asj_XY=0.00000;nhomalt_controls_and_biobanks_asj_XY=0;AC_non_v2_fin_XY=1;AN_non_v2_fin_XY=6066;AF_non_v2_fin_XY=0.000164853;nhomalt_non_v2_fin_XY=0;AC_controls_and_biobanks_ami_XX=0;AN_controls_and_biobanks_ami_XX=30;AF_controls_and_biobanks_ami_XX=0.00000;nhomalt_controls_and_biobanks_ami_XX=0;AC_eas_XX=0;AN_eas_XX=2274;AF_eas_XX=0.00000;nhomalt_eas_XX=0;AC_non_cancer_amr_XY=25;AN_non_cancer_amr_XY=8316;AF_non_cancer_amr_XY=0.00300625;nhomalt_non_cancer_amr_XY=0;AC_non_neuro_ami_XX=0;AN_non_neuro_ami_XX=432;AF_non_neuro_ami_XX=0.00000;nhomalt_non_neuro_ami_XX=0;AC_controls_and_biobanks=45;AN_controls_and_biobanks=32750;AF_controls_and_biobanks=0.00137405;nhomalt_controls_and_biobanks=1;AC_controls_and_biobanks_oth=3;AN_controls_and_biobanks_oth=782;AF_controls_and_biobanks_oth=0.00383632;nhomalt_controls_and_biobanks_oth=0;AC_nfe_XY=56;AN_nfe_XY=28554;AF_nfe_XY=0.00196120;nhomalt_nfe_XY=0;AC_non_cancer_afr_XX=10;AN_non_cancer_afr_XX=21940;AF_non_cancer_afr_XX=0.000455789;nhomalt_non_cancer_afr_XX=0;AC_controls_and_biobanks_sas_XY=0;AN_controls_and_biobanks_sas_XY=2252;AF_controls_and_biobanks_sas_XY=0.00000;nhomalt_controls_and_biobanks_sas_XY=0;AC_non_cancer_oth=7;AN_non_cancer_oth=2008;AF_non_cancer_oth=0.00348606;nhomalt_non_cancer_oth=0;AC_non_topmed_oth=6;AN_non_topmed_oth=1506;AF_non_topmed_oth=0.00398406;nhomalt_non_topmed_oth=0;AC_non_topmed_nfe_XY=16;AN_non_topmed_nfe_XY=11642;AF_non_topmed_nfe_XY=0.00137433;nhomalt_non_topmed_nfe_XY=0;AC_non_topmed_sas_XX=0;AN_non_topmed_sas_XX=1154;AF_non_topmed_sas_XX=0.00000;nhomalt_non_topmed_sas_XX=0;AC_non_v2_nfe=100;AN_non_v2_nfe=51712;AF_non_v2_nfe=0.00193379;nhomalt_non_v2_nfe=0;AC_non_topmed_oth_XX=5;AN_non_topmed_oth_XX=686;AF_non_topmed_oth_XX=0.00728863;nhomalt_non_topmed_oth_XX=0;AC_non_cancer_mid_XX=0;AN_non_cancer_mid_XX=158;AF_non_cancer_mid_XX=0.00000;nhomalt_non_cancer_mid_XX=0;AC_controls_and_biobanks_nfe=15;AN_controls_and_biobanks_nfe=6816;AF_controls_and_biobanks_nfe=0.00220070;nhomalt_controls_and_biobanks_nfe=0;AC_controls_and_biobanks_oth_XY=1;AN_controls_and_biobanks_oth_XY=414;AF_controls_and_biobanks_oth_XY=0.00241546;nhomalt_controls_and_biobanks_oth_XY=0;AC_controls_and_biobanks_fin_XY=0;AN_controls_and_biobanks_fin_XY=4968;AF_controls_and_biobanks_fin_XY=0.00000;nhomalt_controls_and_biobanks_fin_XY=0;AC_non_v2_amr_XX=26;AN_non_v2_amr_XX=6000;AF_non_v2_amr_XX=0.00433333;nhomalt_non_v2_amr_XX=0;AC_non_cancer_asj=0;AN_non_cancer_asj=3288;AF_non_cancer_asj=0.00000;nhomalt_non_cancer_asj=0;AC_non_cancer_oth_XX=6;AN_non_cancer_oth_XX=1004;AF_non_cancer_oth_XX=0.00597610;nhomalt_non_cancer_oth_XX=0;AC_non_neuro_amr=55;AN_non_neuro_amr=14768;AF_non_neuro_amr=0.00372427;nhomalt_non_neuro_amr=1;AC_non_cancer_XX=118;AN_non_cancer_XX=75780;AF_non_cancer_XX=0.00155714;nhomalt_non_cancer_XX=1;AC_non_v2_ami_XY=0;AN_non_v2_ami_XY=440;AF_non_v2_ami_XY=0.00000;nhomalt_non_v2_ami_XY=0;AC_non_neuro_raw=201;AN_non_neuro_raw=134780;AF_non_neuro_raw=0.00149132;nhomalt_non_neuro_raw=1;AC_non_neuro_afr=15;AN_non_neuro_afr=32418;AF_non_neuro_afr=0.000462706;nhomalt_non_neuro_afr=0;AC_non_topmed_ami_XY=0;AN_non_topmed_ami_XY=42;AF_non_topmed_ami_XY=0.00000;nhomalt_non_topmed_ami_XY=0;AC_non_neuro_oth_XY=1;AN_non_neuro_oth_XY=996;AF_non_neuro_oth_XY=0.00100402;nhomalt_non_neuro_oth_XY=0;AC_non_neuro_oth_XX=7;AN_non_neuro_oth_XX=994;AF_non_neuro_oth_XX=0.00704225;nhomalt_non_neuro_oth_XX=0;AC_controls_and_biobanks_XX=28;AN_controls_and_biobanks_XX=13390;AF_controls_and_biobanks_XX=0.00209111;nhomalt_controls_and_biobanks_XX=1;AC_non_cancer_afr_XY=4;AN_non_cancer_afr_XY=19080;AF_non_cancer_afr_XY=0.000209644;nhomalt_non_cancer_afr_XY=0;AC_non_cancer_fin=1;AN_non_cancer_fin=10554;AF_non_cancer_fin=9.47508e-05;nhomalt_non_cancer_fin=0;AC_controls_and_biobanks_asj=0;AN_controls_and_biobanks_asj=136;AF_controls_and_biobanks_asj=0.00000;nhomalt_controls_and_biobanks_asj=0;AC_non_topmed_oth_XY=1;AN_non_topmed_oth_XY=820;AF_non_topmed_oth_XY=0.00121951;nhomalt_non_topmed_oth_XY=0;AC_non_neuro_mid_XX=0;AN_non_neuro_mid_XX=162;AF_non_neuro_mid_XX=0.00000;nhomalt_non_neuro_mid_XX=0;AC_controls_and_biobanks_oth_XX=2;AN_controls_and_biobanks_oth_XX=368;AF_controls_and_biobanks_oth_XX=0.00543478;nhomalt_controls_and_biobanks_oth_XX=0;AC_non_neuro_XY=83;AN_non_neuro_XY=64014;AF_non_neuro_XY=0.00129659;nhomalt_non_neuro_XY=0;AC_nfe=129;AN_nfe=67724;AF_nfe=0.00190479;nhomalt_nfe=0;AC_popmax=56;AN_popmax=15212;AF_popmax=0.00368130;nhomalt_popmax=1;faf95_sas=0.00000;faf99_sas=0.00000;faf95_eas=0.00000;faf99_eas=0.00000;faf95_amr=0.00291099;faf99_amr=0.00263405;faf95_afr=0.000222840;faf99_afr=0.000180610;faf95=0.00122589;faf99=0.00116602;faf95_nfe=0.00163708;faf99_nfe=0.00153602;age_hist_het_bin_freq=7|1|10|5|9|11|11|7|6|2;age_hist_het_n_smaller=7;age_hist_het_n_larger=0;age_hist_hom_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;FS=0.00000;MQ=59.9953;MQRankSum=0.0240000;QD=13.6902;ReadPosRankSum=0.200000;VarDP=14173;QUALapprox=194031;AS_FS=0.00000;AS_MQ=59.9953;AS_MQRankSum=0.0240000;AS_pab_max=1.00000;AS_QD=13.6902;AS_ReadPosRankSum=0.200000;AS_SOR=0.704362;InbreedingCoeff=0.00820744;AS_SB_TABLE=3767,3280|3829,3297;AS_VQSLOD=20.3354;AS_culprit=AS_MQ;POSITIVE_TRAIN_SITE;allele_type=snv;n_alt_alleles=1;variant_type=snv;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|1|1|0|1|0|0|205;gq_hist_all_bin_freq=0|0|0|0|8485|8377|7074|6305|7497|6027|5570|5922|4705|3758|3294|2443|1888|1309|867|2260;dp_hist_alt_bin_freq=0|0|1|8|41|47|55|32|14|6|2|1|0|1|0|0|0|0|0|0;dp_hist_alt_n_larger=0;dp_hist_all_bin_freq=0|0|1084|4994|10165|15478|23699|13987|3923|1233|666|294|137|55|23|11|11|6|6|1;dp_hist_all_n_smaller=0;dp_hist_all_n_larger=8;ab_hist_alt_bin_freq=0|0|0|0|3|3|7|15|34|30|46|29|23|15|2|0|0|0|0|0;cadd_raw_score=8.30222;cadd_phred=42.0000;splice_ai_max_ds=0.0600000;splice_ai_consequence=acceptor_loss;vep=T|stop_gained|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000265379|protein_coding|21/43||ENST00000265379.10:c.4675C>T|ENSP00000265379.7:p.Gln1559Ter|5169|4675|1559|Q/*|Caa/Taa|1||1|SNV||HGNC|HGNC:26674|YES|5|P1||ENSP00000265379|||||||Pfam:PF01391&PANTHER:PTHR22588&PANTHER:PTHR22588&MobiDB_lite:mobidb&MobiDB_lite:mobidb||||||HC|||PERCENTILE:0.596605410923941,GERP_DIST:-4230.04117513537,BP_DIST:3949,DIST_FROM_LAST_EXON:3921,50_BP_RULE:PASS,ANN_ORF:27.873,MAX_ORF:27.873,T|stop_gained&NMD_transcript_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000312481|nonsense_mediated_decay|21/42||ENST00000312481.11:c.4675C>T|ENSP00000309762.7:p.Gln1559Ter|5169|4675|1559|Q/*|Caa/Taa|1||1|SNV||HGNC|HGNC:26674||1|||ENSP00000309762||||||||||||||||,T|stop_gained|HIGH|COL6A5|256076|Transcript|NM_001278298.1|protein_coding|21/41||NM_001278298.1:c.4675C>T|NP_001265227.1:p.Gln1559Ter|5169|4675|1559|Q/*|Caa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||NP_001265227.1|||||||||||||HC|||PERCENTILE:0.595920968769917,GERP_DIST:-2112.24739118978,BP_DIST:3150,DIST_FROM_LAST_EXON:3125,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|COL6A5|256076|Transcript|NM_153264.6|protein_coding|21/40||NM_153264.6:c.4675C>T|NP_694996.5:p.Gln1559Ter|5169|4675|1559|Q/*|Caa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||NP_694996.5|||||||||||||HC|||PERCENTILE:0.616673262102625,GERP_DIST:-1800.35386421397,BP_DIST:2887,DIST_FROM_LAST_EXON:2881,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|non_coding_transcript_exon_variant|MODIFIER|COL6A5|256076|Transcript|NR_022012.2|misc_RNA|21/42||NR_022012.2:n.5169C>T||5169|||||1||1|SNV||EntrezGene|HGNC:26674|YES||||||||||||||||||||,T|stop_gained|HIGH|COL6A5|256076|Transcript|XM_011512621.2|protein_coding|21/41||XM_011512621.2:c.4675C>T|XP_011510923.1:p.Gln1559Ter|5043|4675|1559|Q/*|Caa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510923.1|||||||||||||HC|||PERCENTILE:0.600513808606294,GERP_DIST:-2216.59352122783,BP_DIST:3177,DIST_FROM_LAST_EXON:3149,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|COL6A5|256076|Transcript|XM_011512622.2|protein_coding|21/30||XM_011512622.2:c.4675C>T|XP_011510924.1:p.Gln1559Ter|5043|4675|1559|Q/*|Caa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510924.1|||||||||||||HC|||PERCENTILE:0.869120654396728,GERP_DIST:-715.15908449679,BP_DIST:695,DIST_FROM_LAST_EXON:480,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|COL6A5|256076|Transcript|XM_011512623.2|protein_coding|21/33||XM_011512623.2:c.4675C>T|XP_011510925.1:p.Gln1559Ter|5043|4675|1559|Q/*|Caa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510925.1|||||||||||||HC|||PERCENTILE:0.889967637540453,GERP_DIST:-271.541181472086,BP_DIST:566,DIST_FROM_LAST_EXON:562,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT +chr3 130421152 rs139339125 G T . PASS AC=370;AN=152038;AF=0.00243360;popmax=eas;faf95_popmax=0.00104938;AC_non_v2_XX=72;AN_non_v2_XX=60140;AF_non_v2_XX=0.00119721;nhomalt_non_v2_XX=0;AC_non_cancer_fin_XX=64;AN_non_cancer_fin_XX=2570;AF_non_cancer_fin_XX=0.0249027;nhomalt_non_cancer_fin_XX=1;AC_non_neuro_nfe=32;AN_non_neuro_nfe=63862;AF_non_neuro_nfe=0.000501080;nhomalt_non_neuro_nfe=0;AC_non_neuro_afr_XY=1;AN_non_neuro_afr_XY=13738;AF_non_neuro_afr_XY=7.27908e-05;nhomalt_non_neuro_afr_XY=0;AC_non_neuro_nfe_XY=12;AN_non_neuro_nfe_XY=26226;AF_non_neuro_nfe_XY=0.000457561;nhomalt_non_neuro_nfe_XY=0;AC_controls_and_biobanks_eas_XY=7;AN_controls_and_biobanks_eas_XY=1388;AF_controls_and_biobanks_eas_XY=0.00504323;nhomalt_controls_and_biobanks_eas_XY=0;AC_non_neuro_sas_XX=0;AN_non_neuro_sas_XX=1166;AF_non_neuro_sas_XX=0.00000;nhomalt_non_neuro_sas_XX=0;AC_non_v2=257;AN_non_v2=114446;AF_non_v2=0.00224560;nhomalt_non_v2=4;AC_non_topmed_nfe_XX=14;AN_non_topmed_nfe_XX=9332;AF_non_topmed_nfe_XX=0.00150021;nhomalt_non_topmed_nfe_XX=0;AC_non_v2_mid=0;AN_non_v2_mid=308;AF_non_v2_mid=0.00000;nhomalt_non_v2_mid=0;AC_non_topmed_sas=1;AN_non_topmed_sas=4798;AF_non_topmed_sas=0.000208420;nhomalt_non_topmed_sas=0;AC_non_cancer_eas_XX=2;AN_non_cancer_eas_XX=2172;AF_non_cancer_eas_XX=0.000920810;nhomalt_non_cancer_eas_XX=0;AC_amr_XY=0;AN_amr_XY=8468;AF_amr_XY=0.00000;nhomalt_amr_XY=0;AC_non_v2_nfe_XX=13;AN_non_v2_nfe_XX=31776;AF_non_v2_nfe_XX=0.000409114;nhomalt_non_v2_nfe_XX=0;AC_controls_and_biobanks_XY=133;AN_controls_and_biobanks_XY=19442;AF_controls_and_biobanks_XY=0.00684086;nhomalt_controls_and_biobanks_XY=0;AC_non_neuro_asj_XY=10;AN_non_neuro_asj_XY=1556;AF_non_neuro_asj_XY=0.00642674;nhomalt_non_neuro_asj_XY=0;AC_oth=4;AN_oth=2094;AF_oth=0.00191022;nhomalt_oth=0;AC_non_topmed_mid_XY=0;AN_non_topmed_mid_XY=130;AF_non_topmed_mid_XY=0.00000;nhomalt_non_topmed_mid_XY=0;AC_non_cancer_asj_XX=26;AN_non_cancer_asj_XX=1742;AF_non_cancer_asj_XX=0.0149254;nhomalt_non_cancer_asj_XX=0;AC_sas_XY=1;AN_sas_XY=3660;AF_sas_XY=0.000273224;nhomalt_sas_XY=0;AC_non_neuro_fin=178;AN_non_neuro_fin=6962;AF_non_neuro_fin=0.0255674;nhomalt_non_neuro_fin=3;AC_non_topmed_amr_XY=0;AN_non_topmed_amr_XY=7564;AF_non_topmed_amr_XY=0.00000;nhomalt_non_topmed_amr_XY=0;AC_non_neuro_XX=71;AN_non_neuro_XX=70456;AF_non_neuro_XX=0.00100772;nhomalt_non_neuro_XX=0;AC_fin_XX=64;AN_fin_XX=2570;AF_fin_XX=0.0249027;nhomalt_fin_XX=1;AC_controls_and_biobanks_asj_XX=0;AN_controls_and_biobanks_asj_XX=84;AF_controls_and_biobanks_asj_XX=0.00000;nhomalt_controls_and_biobanks_asj_XX=0;AC_non_v2_raw=261;AN_non_v2_raw=114652;AF_non_v2_raw=0.00227645;nhomalt_non_v2_raw=5;AC_non_v2_asj=31;AN_non_v2_asj=3074;AF_non_v2_asj=0.0100846;nhomalt_non_v2_asj=0;AC_nfe_XX=26;AN_nfe_XX=39350;AF_nfe_XX=0.000660737;nhomalt_nfe_XX=0;AC_controls_and_biobanks_raw=151;AN_controls_and_biobanks_raw=32920;AF_controls_and_biobanks_raw=0.00458688;nhomalt_controls_and_biobanks_raw=1;AC_controls_and_biobanks_ami=0;AN_controls_and_biobanks_ami=60;AF_controls_and_biobanks_ami=0.00000;nhomalt_controls_and_biobanks_ami=0;AC_non_topmed_eas=9;AN_non_topmed_eas=3724;AF_non_topmed_eas=0.00241676;nhomalt_non_topmed_eas=0;AC_non_v2_amr=0;AN_non_v2_amr=13706;AF_non_v2_amr=0.00000;nhomalt_non_v2_amr=0;AC_non_neuro_sas=1;AN_non_neuro_sas=4824;AF_non_neuro_sas=0.000207297;nhomalt_non_neuro_sas=0;AC_non_cancer_fin_XY=209;AN_non_cancer_fin_XY=8030;AF_non_cancer_fin_XY=0.0260274;nhomalt_non_cancer_fin_XY=4;AC_non_cancer_nfe_XY=13;AN_non_cancer_nfe_XY=26692;AF_non_cancer_nfe_XY=0.000487037;nhomalt_non_cancer_nfe_XY=0;AC_non_v2_oth=4;AN_non_v2_oth=1864;AF_non_v2_oth=0.00214592;nhomalt_non_v2_oth=0;AC_ami=0;AN_ami=912;AF_ami=0.00000;nhomalt_ami=0;AC_non_cancer_XY=245;AN_non_cancer_XY=71748;AF_non_cancer_XY=0.00341473;nhomalt_non_cancer_XY=4;AC_non_v2_sas=1;AN_non_v2_sas=3882;AF_non_v2_sas=0.000257599;nhomalt_non_v2_sas=0;AC_non_topmed_afr_XX=0;AN_non_topmed_afr_XX=11918;AF_non_topmed_afr_XX=0.00000;nhomalt_non_topmed_afr_XX=0;AC_sas=1;AN_sas=4826;AF_sas=0.000207211;nhomalt_sas=0;AC_non_neuro_nfe_XX=20;AN_non_neuro_nfe_XX=37636;AF_non_neuro_nfe_XX=0.000531406;nhomalt_non_neuro_nfe_XX=0;AC_non_topmed_ami_XX=0;AN_non_topmed_ami_XX=68;AF_non_topmed_ami_XX=0.00000;nhomalt_non_topmed_ami_XX=0;AC_ami_XY=0;AN_ami_XY=442;AF_ami_XY=0.00000;nhomalt_ami_XY=0;AC_oth_XX=2;AN_oth_XX=1034;AF_oth_XX=0.00193424;nhomalt_oth_XX=0;AC_non_cancer_eas=10;AN_non_cancer_eas=4932;AF_non_cancer_eas=0.00202758;nhomalt_non_cancer_eas=0;AC_non_topmed_XY=232;AN_non_topmed_XY=47834;AF_non_topmed_XY=0.00485011;nhomalt_non_topmed_XY=4;AC_non_v2_ami=0;AN_non_v2_ami=910;AF_non_v2_ami=0.00000;nhomalt_non_v2_ami=0;AC_non_neuro=265;AN_non_neuro=134628;AF_non_neuro=0.00196839;nhomalt_non_neuro=3;AC_amr_XX=0;AN_amr_XX=6774;AF_amr_XX=0.00000;nhomalt_amr_XX=0;AC_controls_and_biobanks_nfe_XY=2;AN_controls_and_biobanks_nfe_XY=3588;AF_controls_and_biobanks_nfe_XY=0.000557414;nhomalt_controls_and_biobanks_nfe_XY=0;AC_controls_and_biobanks_eas=9;AN_controls_and_biobanks_eas=2416;AF_controls_and_biobanks_eas=0.00372517;nhomalt_controls_and_biobanks_eas=0;AC_XX=125;AN_XX=77802;AF_XX=0.00160664;nhomalt_XX=1;AC_non_cancer_oth_XY=2;AN_non_cancer_oth_XY=1014;AF_non_cancer_oth_XY=0.00197239;nhomalt_non_cancer_oth_XY=0;AC_non_v2_XY=185;AN_non_v2_XY=54306;AF_non_v2_XY=0.00340662;nhomalt_non_v2_XY=4;AC_non_topmed_amr_XX=0;AN_non_topmed_amr_XX=5304;AF_non_topmed_amr_XX=0.00000;nhomalt_non_topmed_amr_XX=0;AC_fin=273;AN_fin=10600;AF_fin=0.0257547;nhomalt_fin=5;AC_controls_and_biobanks_nfe_XX=1;AN_controls_and_biobanks_nfe_XX=3256;AF_controls_and_biobanks_nfe_XX=0.000307125;nhomalt_controls_and_biobanks_nfe_XX=0;AC_controls_and_biobanks_afr=1;AN_controls_and_biobanks_afr=9088;AF_controls_and_biobanks_afr=0.000110035;nhomalt_controls_and_biobanks_afr=0;AC_asj_XX=30;AN_asj_XX=1866;AF_asj_XX=0.0160772;nhomalt_asj_XX=0;AC_non_topmed_mid=0;AN_non_topmed_mid=272;AF_non_topmed_mid=0.00000;nhomalt_non_topmed_mid=0;AC_non_cancer_sas_XY=1;AN_non_cancer_sas_XY=3646;AF_non_cancer_sas_XY=0.000274273;nhomalt_non_cancer_sas_XY=0;AC_sas_XX=0;AN_sas_XX=1166;AF_sas_XX=0.00000;nhomalt_sas_XX=0;AC_non_topmed=319;AN_non_topmed=80640;AF_non_topmed=0.00395585;nhomalt_non_topmed=5;AC_non_v2_oth_XX=2;AN_non_v2_oth_XX=934;AF_non_v2_oth_XX=0.00214133;nhomalt_non_v2_oth_XX=0;AC_non_neuro_ami_XY=0;AN_non_neuro_ami_XY=430;AF_non_neuro_ami_XY=0.00000;nhomalt_non_neuro_ami_XY=0;AC_controls_and_biobanks_afr_XY=1;AN_controls_and_biobanks_afr_XY=4384;AF_controls_and_biobanks_afr_XY=0.000228102;nhomalt_controls_and_biobanks_afr_XY=0;AC_controls_and_biobanks_amr_XX=0;AN_controls_and_biobanks_amr_XX=2478;AF_controls_and_biobanks_amr_XX=0.00000;nhomalt_controls_and_biobanks_amr_XX=0;AC_non_topmed_amr=0;AN_non_topmed_amr=12868;AF_non_topmed_amr=0.00000;nhomalt_non_topmed_amr=0;AC_controls_and_biobanks_sas_XX=0;AN_controls_and_biobanks_sas_XX=842;AF_controls_and_biobanks_sas_XX=0.00000;nhomalt_controls_and_biobanks_sas_XX=0;AC_controls_and_biobanks_amr=0;AN_controls_and_biobanks_amr=4688;AF_controls_and_biobanks_amr=0.00000;nhomalt_controls_and_biobanks_amr=0;AC_non_neuro_fin_XX=18;AN_non_neuro_fin_XX=656;AF_non_neuro_fin_XX=0.0274390;nhomalt_non_neuro_fin_XX=0;AC_non_cancer_raw=369;AN_non_cancer_raw=148010;AF_non_cancer_raw=0.00249307;nhomalt_non_cancer_raw=6;AC_non_neuro_mid=0;AN_non_neuro_mid=310;AF_non_neuro_mid=0.00000;nhomalt_non_neuro_mid=0;AC_non_v2_asj_XY=8;AN_non_v2_asj_XY=1388;AF_non_v2_asj_XY=0.00576369;nhomalt_non_v2_asj_XY=0;AC_non_v2_afr=0;AN_non_v2_afr=28700;AF_non_v2_afr=0.00000;nhomalt_non_v2_afr=0;AC_non_neuro_fin_XY=160;AN_non_neuro_fin_XY=6306;AF_non_neuro_fin_XY=0.0253727;nhomalt_non_neuro_fin_XY=3;AC_non_cancer_afr=2;AN_non_cancer_afr=41104;AF_non_cancer_afr=4.86571e-05;nhomalt_non_cancer_afr=0;AC_non_topmed_sas_XY=1;AN_non_topmed_sas_XY=3638;AF_non_topmed_sas_XY=0.000274876;nhomalt_non_topmed_sas_XY=0;AC_mid_XY=0;AN_mid_XY=152;AF_mid_XY=0.00000;nhomalt_mid_XY=0;AC_non_v2_oth_XY=2;AN_non_v2_oth_XY=930;AF_non_v2_oth_XY=0.00215054;nhomalt_non_v2_oth_XY=0;AC_controls_and_biobanks_fin=134;AN_controls_and_biobanks_fin=5482;AF_controls_and_biobanks_fin=0.0244436;nhomalt_controls_and_biobanks_fin=0;AC_non_neuro_eas_XY=8;AN_non_neuro_eas_XY=2892;AF_non_neuro_eas_XY=0.00276625;nhomalt_non_neuro_eas_XY=0;AC_non_topmed_eas_XX=2;AN_non_topmed_eas_XX=1400;AF_non_topmed_eas_XX=0.00142857;nhomalt_non_topmed_eas_XX=0;AC_non_v2_afr_XX=0;AN_non_v2_afr_XX=15802;AF_non_v2_afr_XX=0.00000;nhomalt_non_v2_afr_XX=0;AC_non_neuro_amr_XX=0;AN_non_neuro_amr_XX=6584;AF_non_neuro_amr_XX=0.00000;nhomalt_non_neuro_amr_XX=0;AC_non_cancer_ami=0;AN_non_cancer_ami=912;AF_non_cancer_ami=0.00000;nhomalt_non_cancer_ami=0;AC_XY=245;AN_XY=74236;AF_XY=0.00330029;nhomalt_XY=4;AC_non_topmed_asj_XX=6;AN_non_topmed_asj_XX=280;AF_non_topmed_asj_XX=0.0214286;nhomalt_non_topmed_asj_XX=0;AC_non_topmed_eas_XY=7;AN_non_topmed_eas_XY=2324;AF_non_topmed_eas_XY=0.00301205;nhomalt_non_topmed_eas_XY=0;AC_non_v2_eas_XY=8;AN_non_v2_eas_XY=1490;AF_non_v2_eas_XY=0.00536913;nhomalt_non_v2_eas_XY=0;AC_eas=10;AN_eas=5166;AF_eas=0.00193573;nhomalt_eas=0;AC_asj_XY=11;AN_asj_XY=1604;AF_asj_XY=0.00685786;nhomalt_asj_XY=0;AC_non_v2_eas_XX=2;AN_non_v2_eas_XX=1306;AF_non_v2_eas_XX=0.00153139;nhomalt_non_v2_eas_XX=0;AC_controls_and_biobanks_mid_XY=0;AN_controls_and_biobanks_mid_XY=112;AF_controls_and_biobanks_mid_XY=0.00000;nhomalt_controls_and_biobanks_mid_XY=0;AC_fin_XY=209;AN_fin_XY=8030;AF_fin_XY=0.0260274;nhomalt_fin_XY=4;AC_non_topmed_nfe=23;AN_non_topmed_nfe=21036;AF_non_topmed_nfe=0.00109336;nhomalt_non_topmed_nfe=0;AC_amr=0;AN_amr=15242;AF_amr=0.00000;nhomalt_amr=0;AC_non_neuro_ami=0;AN_non_neuro_ami=862;AF_non_neuro_ami=0.00000;nhomalt_non_neuro_ami=0;AC_non_cancer_nfe_XX=25;AN_non_cancer_nfe_XX=38064;AF_non_cancer_nfe_XX=0.000656789;nhomalt_non_cancer_nfe_XX=0;AC_non_cancer_mid=0;AN_non_cancer_mid=304;AF_non_cancer_mid=0.00000;nhomalt_non_cancer_mid=0;AC_non_v2_mid_XY=0;AN_non_v2_mid_XY=146;AF_non_v2_mid_XY=0.00000;nhomalt_non_v2_mid_XY=0;AC_controls_and_biobanks_amr_XY=0;AN_controls_and_biobanks_amr_XY=2210;AF_controls_and_biobanks_amr_XY=0.00000;nhomalt_controls_and_biobanks_amr_XY=0;AC_non_cancer_ami_XY=0;AN_non_cancer_ami_XY=442;AF_non_cancer_ami_XY=0.00000;nhomalt_non_cancer_ami_XY=0;AC_non_neuro_asj_XX=28;AN_non_neuro_asj_XX=1830;AF_non_neuro_asj_XX=0.0153005;nhomalt_non_neuro_asj_XX=0;AC_afr=2;AN_afr=41426;AF_afr=4.82789e-05;nhomalt_afr=0;AC_non_v2_sas_XX=0;AN_non_v2_sas_XX=792;AF_non_v2_sas_XX=0.00000;nhomalt_non_v2_sas_XX=0;AC_non_neuro_afr_XX=1;AN_non_neuro_afr_XX=18716;AF_non_neuro_afr_XX=5.34302e-05;nhomalt_non_neuro_afr_XX=0;AC_non_cancer_sas=1;AN_non_cancer_sas=4794;AF_non_cancer_sas=0.000208594;nhomalt_non_cancer_sas=0;AC_non_topmed_fin=273;AN_non_topmed_fin=10508;AF_non_topmed_fin=0.0259802;nhomalt_non_topmed_fin=5;AC_non_cancer_asj_XY=11;AN_non_cancer_asj_XY=1558;AF_non_cancer_asj_XY=0.00706033;nhomalt_non_cancer_asj_XY=0;AC_non_cancer_mid_XY=0;AN_non_cancer_mid_XY=144;AF_non_cancer_mid_XY=0.00000;nhomalt_non_cancer_mid_XY=0;AC_raw=374;AN_raw=152272;AF_raw=0.00245613;nhomalt_raw=6;AC_non_topmed_XX=87;AN_non_topmed_XX=32806;AF_non_topmed_XX=0.00265195;nhomalt_non_topmed_XX=1;AC_ami_XX=0;AN_ami_XX=470;AF_ami_XX=0.00000;nhomalt_ami_XX=0;AC_eas_XY=8;AN_eas_XY=2892;AF_eas_XY=0.00276625;nhomalt_eas_XY=0;AC_controls_and_biobanks_mid=0;AN_controls_and_biobanks_mid=246;AF_controls_and_biobanks_mid=0.00000;nhomalt_controls_and_biobanks_mid=0;AC_non_v2_nfe_XY=6;AN_non_v2_nfe_XY=20138;AF_non_v2_nfe_XY=0.000297944;nhomalt_non_v2_nfe_XY=0;AC_controls_and_biobanks_sas=1;AN_controls_and_biobanks_sas=3106;AF_controls_and_biobanks_sas=0.000321958;nhomalt_controls_and_biobanks_sas=0;AC_non_v2_eas=10;AN_non_v2_eas=2796;AF_non_v2_eas=0.00357654;nhomalt_non_v2_eas=0;AC_mid=0;AN_mid=316;AF_mid=0.00000;nhomalt_mid=0;AC_oth_XY=2;AN_oth_XY=1060;AF_oth_XY=0.00188679;nhomalt_oth_XY=0;AC_non_cancer_nfe=38;AN_non_cancer_nfe=64756;AF_non_cancer_nfe=0.000586818;nhomalt_non_cancer_nfe=0;AC_non_neuro_eas_XX=2;AN_non_neuro_eas_XX=2274;AF_non_neuro_eas_XX=0.000879507;nhomalt_non_neuro_eas_XX=0;AC_non_neuro_sas_XY=1;AN_non_neuro_sas_XY=3658;AF_non_neuro_sas_XY=0.000273373;nhomalt_non_neuro_sas_XY=0;AC_non_cancer_ami_XX=0;AN_non_cancer_ami_XX=470;AF_non_cancer_ami_XX=0.00000;nhomalt_non_cancer_ami_XX=0;AC_mid_XX=0;AN_mid_XX=164;AF_mid_XX=0.00000;nhomalt_mid_XX=0;AC_non_topmed_asj=10;AN_non_topmed_asj=998;AF_non_topmed_asj=0.0100200;nhomalt_non_topmed_asj=0;AC_non_v2_asj_XX=23;AN_non_v2_asj_XX=1686;AF_non_v2_asj_XX=0.0136418;nhomalt_non_v2_asj_XX=0;nhomalt=5;AC_non_v2_amr_XY=0;AN_non_v2_amr_XY=7692;AF_non_v2_amr_XY=0.00000;nhomalt_non_v2_amr_XY=0;AC_non_cancer_amr_XX=0;AN_non_cancer_amr_XX=6722;AF_non_cancer_amr_XX=0.00000;nhomalt_non_cancer_amr_XX=0;AC_controls_and_biobanks_afr_XX=0;AN_controls_and_biobanks_afr_XX=4704;AF_controls_and_biobanks_afr_XX=0.00000;nhomalt_controls_and_biobanks_afr_XX=0;AC_asj=41;AN_asj=3470;AF_asj=0.0118156;nhomalt_asj=0;AC_non_topmed_asj_XY=4;AN_non_topmed_asj_XY=718;AF_non_topmed_asj_XY=0.00557103;nhomalt_non_topmed_asj_XY=0;AC_non_v2_fin_XX=32;AN_non_v2_fin_XX=1198;AF_non_v2_fin_XX=0.0267112;nhomalt_non_v2_fin_XX=0;AC_non_topmed_ami=0;AN_non_topmed_ami=112;AF_non_topmed_ami=0.00000;nhomalt_non_topmed_ami=0;AC_controls_and_biobanks_eas_XX=2;AN_controls_and_biobanks_eas_XX=1028;AF_controls_and_biobanks_eas_XX=0.00194553;nhomalt_controls_and_biobanks_eas_XX=0;AC_controls_and_biobanks_fin_XX=13;AN_controls_and_biobanks_fin_XX=490;AF_controls_and_biobanks_fin_XX=0.0265306;nhomalt_controls_and_biobanks_fin_XX=0;AC_non_topmed_raw=323;AN_non_topmed_raw=80830;AF_non_topmed_raw=0.00399604;nhomalt_non_topmed_raw=6;AC_non_cancer_eas_XY=8;AN_non_cancer_eas_XY=2760;AF_non_cancer_eas_XY=0.00289855;nhomalt_non_cancer_eas_XY=0;AC_non_cancer=365;AN_non_cancer=147780;AF_non_cancer=0.00246989;nhomalt_non_cancer=5;AC_controls_and_biobanks_ami_XY=0;AN_controls_and_biobanks_ami_XY=30;AF_controls_and_biobanks_ami_XY=0.00000;nhomalt_controls_and_biobanks_ami_XY=0;AC_controls_and_biobanks_mid_XX=0;AN_controls_and_biobanks_mid_XX=134;AF_controls_and_biobanks_mid_XX=0.00000;nhomalt_controls_and_biobanks_mid_XX=0;AC_non_v2_afr_XY=0;AN_non_v2_afr_XY=12898;AF_non_v2_afr_XY=0.00000;nhomalt_non_v2_afr_XY=0;AC_non_v2_sas_XY=1;AN_non_v2_sas_XY=3090;AF_non_v2_sas_XY=0.000323625;nhomalt_non_v2_sas_XY=0;AC_non_v2_fin=192;AN_non_v2_fin=7292;AF_non_v2_fin=0.0263302;nhomalt_non_v2_fin=4;AC_non_neuro_oth=4;AN_non_neuro_oth=2004;AF_non_neuro_oth=0.00199601;nhomalt_non_neuro_oth=0;AC_non_cancer_sas_XX=0;AN_non_cancer_sas_XX=1148;AF_non_cancer_sas_XX=0.00000;nhomalt_non_cancer_sas_XX=0;AC_non_neuro_asj=38;AN_non_neuro_asj=3386;AF_non_neuro_asj=0.0112227;nhomalt_non_neuro_asj=0;AC_non_topmed_afr=1;AN_non_topmed_afr=24804;AF_non_topmed_afr=4.03161e-05;nhomalt_non_topmed_afr=0;AC_non_topmed_afr_XY=1;AN_non_topmed_afr_XY=12886;AF_non_topmed_afr_XY=7.76036e-05;nhomalt_non_topmed_afr_XY=0;AC_non_neuro_eas=10;AN_non_neuro_eas=5166;AF_non_neuro_eas=0.00193573;nhomalt_non_neuro_eas=0;AC_afr_XX=1;AN_afr_XX=22134;AF_afr_XX=4.51794e-05;nhomalt_afr_XX=0;AC_non_neuro_mid_XY=0;AN_non_neuro_mid_XY=146;AF_non_neuro_mid_XY=0.00000;nhomalt_non_neuro_mid_XY=0;AC_non_topmed_fin_XX=64;AN_non_topmed_fin_XX=2512;AF_non_topmed_fin_XX=0.0254777;nhomalt_non_topmed_fin_XX=1;AC_non_cancer_amr=0;AN_non_cancer_amr=15054;AF_non_cancer_amr=0.00000;nhomalt_non_cancer_amr=0;AC_non_v2_ami_XX=0;AN_non_v2_ami_XX=470;AF_non_v2_ami_XX=0.00000;nhomalt_non_v2_ami_XX=0;AC_afr_XY=1;AN_afr_XY=19292;AF_afr_XY=5.18350e-05;nhomalt_afr_XY=0;AC_non_v2_mid_XX=0;AN_non_v2_mid_XX=162;AF_non_v2_mid_XX=0.00000;nhomalt_non_v2_mid_XX=0;AC_non_topmed_fin_XY=209;AN_non_topmed_fin_XY=7996;AF_non_topmed_fin_XY=0.0261381;nhomalt_non_topmed_fin_XY=4;AC_non_neuro_amr_XY=0;AN_non_neuro_amr_XY=8214;AF_non_neuro_amr_XY=0.00000;nhomalt_non_neuro_amr_XY=0;AC_non_topmed_mid_XX=0;AN_non_topmed_mid_XX=142;AF_non_topmed_mid_XX=0.00000;nhomalt_non_topmed_mid_XX=0;AC_controls_and_biobanks_asj_XY=0;AN_controls_and_biobanks_asj_XY=52;AF_controls_and_biobanks_asj_XY=0.00000;nhomalt_controls_and_biobanks_asj_XY=0;AC_non_v2_fin_XY=160;AN_non_v2_fin_XY=6094;AF_non_v2_fin_XY=0.0262553;nhomalt_non_v2_fin_XY=4;AC_controls_and_biobanks_ami_XX=0;AN_controls_and_biobanks_ami_XX=30;AF_controls_and_biobanks_ami_XX=0.00000;nhomalt_controls_and_biobanks_ami_XX=0;AC_eas_XX=2;AN_eas_XX=2274;AF_eas_XX=0.000879507;nhomalt_eas_XX=0;AC_non_cancer_amr_XY=0;AN_non_cancer_amr_XY=8332;AF_non_cancer_amr_XY=0.00000;nhomalt_non_cancer_amr_XY=0;AC_non_neuro_ami_XX=0;AN_non_neuro_ami_XX=432;AF_non_neuro_ami_XX=0.00000;nhomalt_non_neuro_ami_XX=0;AC_controls_and_biobanks=149;AN_controls_and_biobanks=32856;AF_controls_and_biobanks=0.00453494;nhomalt_controls_and_biobanks=0;AC_controls_and_biobanks_oth=1;AN_controls_and_biobanks_oth=790;AF_controls_and_biobanks_oth=0.00126582;nhomalt_controls_and_biobanks_oth=0;AC_nfe_XY=13;AN_nfe_XY=28636;AF_nfe_XY=0.000453974;nhomalt_nfe_XY=0;AC_non_cancer_afr_XX=1;AN_non_cancer_afr_XX=21974;AF_non_cancer_afr_XX=4.55083e-05;nhomalt_non_cancer_afr_XX=0;AC_controls_and_biobanks_sas_XY=1;AN_controls_and_biobanks_sas_XY=2264;AF_controls_and_biobanks_sas_XY=0.000441696;nhomalt_controls_and_biobanks_sas_XY=0;AC_non_cancer_oth=4;AN_non_cancer_oth=2024;AF_non_cancer_oth=0.00197628;nhomalt_non_cancer_oth=0;AC_non_topmed_oth=2;AN_non_topmed_oth=1520;AF_non_topmed_oth=0.00131579;nhomalt_non_topmed_oth=0;AC_non_topmed_nfe_XY=9;AN_non_topmed_nfe_XY=11704;AF_non_topmed_nfe_XY=0.000768968;nhomalt_non_topmed_nfe_XY=0;AC_non_topmed_sas_XX=0;AN_non_topmed_sas_XX=1160;AF_non_topmed_sas_XX=0.00000;nhomalt_non_topmed_sas_XX=0;AC_non_v2_nfe=19;AN_non_v2_nfe=51914;AF_non_v2_nfe=0.000365990;nhomalt_non_v2_nfe=0;AC_non_topmed_oth_XX=1;AN_non_topmed_oth_XX=690;AF_non_topmed_oth_XX=0.00144928;nhomalt_non_topmed_oth_XX=0;AC_non_cancer_mid_XX=0;AN_non_cancer_mid_XX=160;AF_non_cancer_mid_XX=0.00000;nhomalt_non_cancer_mid_XX=0;AC_controls_and_biobanks_nfe=3;AN_controls_and_biobanks_nfe=6844;AF_controls_and_biobanks_nfe=0.000438340;nhomalt_controls_and_biobanks_nfe=0;AC_controls_and_biobanks_oth_XY=1;AN_controls_and_biobanks_oth_XY=422;AF_controls_and_biobanks_oth_XY=0.00236967;nhomalt_controls_and_biobanks_oth_XY=0;AC_controls_and_biobanks_fin_XY=121;AN_controls_and_biobanks_fin_XY=4992;AF_controls_and_biobanks_fin_XY=0.0242388;nhomalt_controls_and_biobanks_fin_XY=0;AC_non_v2_amr_XX=0;AN_non_v2_amr_XX=6014;AF_non_v2_amr_XX=0.00000;nhomalt_non_v2_amr_XX=0;AC_non_cancer_asj=37;AN_non_cancer_asj=3300;AF_non_cancer_asj=0.0112121;nhomalt_non_cancer_asj=0;AC_non_cancer_oth_XX=2;AN_non_cancer_oth_XX=1010;AF_non_cancer_oth_XX=0.00198020;nhomalt_non_cancer_oth_XX=0;AC_non_neuro_amr=0;AN_non_neuro_amr=14798;AF_non_neuro_amr=0.00000;nhomalt_non_neuro_amr=0;AC_non_cancer_XX=120;AN_non_cancer_XX=76032;AF_non_cancer_XX=0.00157828;nhomalt_non_cancer_XX=1;AC_non_v2_ami_XY=0;AN_non_v2_ami_XY=440;AF_non_v2_ami_XY=0.00000;nhomalt_non_v2_ami_XY=0;AC_non_neuro_raw=268;AN_non_neuro_raw=134844;AF_non_neuro_raw=0.00198748;nhomalt_non_neuro_raw=4;AC_non_neuro_afr=2;AN_non_neuro_afr=32454;AF_non_neuro_afr=6.16257e-05;nhomalt_non_neuro_afr=0;AC_non_topmed_ami_XY=0;AN_non_topmed_ami_XY=44;AF_non_topmed_ami_XY=0.00000;nhomalt_non_topmed_ami_XY=0;AC_non_neuro_oth_XY=2;AN_non_neuro_oth_XY=1006;AF_non_neuro_oth_XY=0.00198807;nhomalt_non_neuro_oth_XY=0;AC_non_neuro_oth_XX=2;AN_non_neuro_oth_XX=998;AF_non_neuro_oth_XX=0.00200401;nhomalt_non_neuro_oth_XX=0;AC_controls_and_biobanks_XX=16;AN_controls_and_biobanks_XX=13414;AF_controls_and_biobanks_XX=0.00119278;nhomalt_controls_and_biobanks_XX=0;AC_non_cancer_afr_XY=1;AN_non_cancer_afr_XY=19130;AF_non_cancer_afr_XY=5.22739e-05;nhomalt_non_cancer_afr_XY=0;AC_non_cancer_fin=273;AN_non_cancer_fin=10600;AF_non_cancer_fin=0.0257547;nhomalt_non_cancer_fin=5;AC_controls_and_biobanks_asj=0;AN_controls_and_biobanks_asj=136;AF_controls_and_biobanks_asj=0.00000;nhomalt_controls_and_biobanks_asj=0;AC_non_topmed_oth_XY=1;AN_non_topmed_oth_XY=830;AF_non_topmed_oth_XY=0.00120482;nhomalt_non_topmed_oth_XY=0;AC_non_neuro_mid_XX=0;AN_non_neuro_mid_XX=164;AF_non_neuro_mid_XX=0.00000;nhomalt_non_neuro_mid_XX=0;AC_controls_and_biobanks_oth_XX=0;AN_controls_and_biobanks_oth_XX=368;AF_controls_and_biobanks_oth_XX=0.00000;nhomalt_controls_and_biobanks_oth_XX=0;AC_non_neuro_XY=194;AN_non_neuro_XY=64172;AF_non_neuro_XY=0.00302313;nhomalt_non_neuro_XY=3;AC_nfe=39;AN_nfe=67986;AF_nfe=0.000573648;nhomalt_nfe=0;AC_popmax=10;AN_popmax=5166;AF_popmax=0.00193573;nhomalt_popmax=0;faf95_sas=0.00000;faf99_sas=0.00000;faf95_eas=0.00104938;faf99_eas=0.000799140;faf95_amr=0.00000;faf99_amr=0.00000;faf95_afr=8.00000e-06;faf99_afr=2.99000e-06;faf95=0.00222904;faf99=0.00214814;faf95_nfe=0.000430970;faf99_nfe=0.000381260;age_hist_het_bin_freq=9|6|15|11|16|19|13|11|7|2;age_hist_het_n_smaller=5;age_hist_het_n_larger=1;age_hist_hom_bin_freq=0|0|0|0|1|1|0|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;FS=0.00000;MQ=59.9978;MQRankSum=-0.0290000;QD=13.4372;ReadPosRankSum=0.336000;VarDP=17893;QUALapprox=240432;AS_FS=0.00000;AS_MQ=59.9978;AS_MQRankSum=-0.0290000;AS_pab_max=1.00000;AS_QD=13.4372;AS_ReadPosRankSum=0.336000;AS_SOR=0.644217;InbreedingCoeff=0.0297024;AS_SB_TABLE=4164,4883|4182,4664;AS_VQSLOD=20.4729;AS_culprit=AS_MQ;POSITIVE_TRAIN_SITE;allele_type=snv;n_alt_alleles=1;variant_type=snv;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|1|0|0|0|0|1|0|1|1|2|359;gq_hist_all_bin_freq=0|0|0|0|33942|12616|8047|5201|4628|3406|2339|1712|1259|816|580|368|274|166|124|541;dp_hist_alt_bin_freq=0|0|5|28|71|74|81|51|31|16|4|1|0|0|2|0|0|0|0|0;dp_hist_alt_n_larger=1;dp_hist_all_bin_freq=0|0|275|2345|7987|13368|31115|17662|2237|463|236|128|68|53|37|17|8|6|6|4;dp_hist_all_n_smaller=0;dp_hist_all_n_larger=4;ab_hist_alt_bin_freq=0|0|0|0|0|4|21|29|62|58|83|47|37|9|9|1|0|0|0|0;cadd_raw_score=5.11503;cadd_phred=33.0000;splice_ai_max_ds=0.740000;splice_ai_consequence=acceptor_loss;vep=T|splice_acceptor_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000265379|protein_coding||25/42|ENST00000265379.10:c.4951-1G>T|||||||1||1|SNV||HGNC|HGNC:26674|YES|5|P1||ENSP00000265379|||||||||||||HC|||INTRON_SIZE:2221,T|splice_acceptor_variant&NMD_transcript_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000312481|nonsense_mediated_decay||25/41|ENST00000312481.11:c.4951-1G>T|||||||1||1|SNV||HGNC|HGNC:26674||1|||ENSP00000309762||||||||||||||||,T|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|NM_001278298.1|protein_coding||25/40|NM_001278298.1:c.4951-1G>T|||||||1||1|SNV||EntrezGene|HGNC:26674|||||NP_001265227.1|||||||||||||HC|||INTRON_SIZE:2221,T|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|NM_153264.6|protein_coding||25/39|NM_153264.6:c.4951-1G>T|||||||1||1|SNV||EntrezGene|HGNC:26674|||||NP_694996.5|||||||||||||HC|||INTRON_SIZE:2221,T|splice_acceptor_variant&non_coding_transcript_variant|HIGH|COL6A5|256076|Transcript|NR_022012.2|misc_RNA||25/41|NR_022012.2:n.5445-1G>T|||||||1||1|SNV||EntrezGene|HGNC:26674|YES||||||||||||||||||||,T|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|XM_011512621.2|protein_coding||24/40|XM_011512621.2:c.4888-1G>T|||||||1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510923.1|||||||||||||HC|||INTRON_SIZE:2221,T|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|XM_011512622.2|protein_coding||25/29|XM_011512622.2:c.4951-1G>T|||||||1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510924.1|||||||||||||HC|||INTRON_SIZE:2221,T|splice_acceptor_variant|HIGH|COL6A5|256076|Transcript|XM_011512623.2|protein_coding||25/32|XM_011512623.2:c.4951-1G>T|||||||1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510925.1|||||||||||||HC|||INTRON_SIZE:2221 +chr3 130440486 rs2201717 C T . PASS AC=1908;AN=152138;AF=0.0125412;popmax=amr;faf95_popmax=0.0590734;AC_non_v2_XX=737;AN_non_v2_XX=60172;AF_non_v2_XX=0.0122482;nhomalt_non_v2_XX=19;AC_non_cancer_fin_XX=41;AN_non_cancer_fin_XX=2570;AF_non_cancer_fin_XX=0.0159533;nhomalt_non_cancer_fin_XX=0;AC_non_neuro_nfe=535;AN_non_neuro_nfe=63892;AF_non_neuro_nfe=0.00837351;nhomalt_non_neuro_nfe=4;AC_non_neuro_afr_XY=45;AN_non_neuro_afr_XY=13744;AF_non_neuro_afr_XY=0.00327416;nhomalt_non_neuro_afr_XY=0;AC_non_neuro_nfe_XY=225;AN_non_neuro_nfe_XY=26252;AF_non_neuro_nfe_XY=0.00857078;nhomalt_non_neuro_nfe_XY=2;AC_controls_and_biobanks_eas_XY=1;AN_controls_and_biobanks_eas_XY=1394;AF_controls_and_biobanks_eas_XY=0.000717360;nhomalt_controls_and_biobanks_eas_XY=0;AC_non_neuro_sas_XX=4;AN_non_neuro_sas_XX=1164;AF_non_neuro_sas_XX=0.00343643;nhomalt_non_neuro_sas_XX=0;AC_non_v2=1536;AN_non_v2=114554;AF_non_v2=0.0134085;nhomalt_non_v2=40;AC_non_topmed_nfe_XX=60;AN_non_topmed_nfe_XX=9322;AF_non_topmed_nfe_XX=0.00643639;nhomalt_non_topmed_nfe_XX=1;AC_non_v2_mid=0;AN_non_v2_mid=308;AF_non_v2_mid=0.00000;nhomalt_non_v2_mid=0;AC_non_topmed_sas=20;AN_non_topmed_sas=4806;AF_non_topmed_sas=0.00416146;nhomalt_non_topmed_sas=0;AC_non_cancer_eas_XX=0;AN_non_cancer_eas_XX=2172;AF_non_cancer_eas_XX=0.00000;nhomalt_non_cancer_eas_XX=0;AC_amr_XY=489;AN_amr_XY=8476;AF_amr_XY=0.0576923;nhomalt_amr_XY=20;AC_non_v2_nfe_XX=274;AN_non_v2_nfe_XX=31782;AF_non_v2_nfe_XX=0.00862123;nhomalt_non_v2_nfe_XX=1;AC_controls_and_biobanks_XY=351;AN_controls_and_biobanks_XY=19458;AF_controls_and_biobanks_XY=0.0180389;nhomalt_controls_and_biobanks_XY=12;AC_non_neuro_asj_XY=0;AN_non_neuro_asj_XY=1556;AF_non_neuro_asj_XY=0.00000;nhomalt_non_neuro_asj_XY=0;AC_oth=26;AN_oth=2090;AF_oth=0.0124402;nhomalt_oth=1;AC_non_topmed_mid_XY=0;AN_non_topmed_mid_XY=130;AF_non_topmed_mid_XY=0.00000;nhomalt_non_topmed_mid_XY=0;AC_non_cancer_asj_XX=0;AN_non_cancer_asj_XX=1744;AF_non_cancer_asj_XX=0.00000;nhomalt_non_cancer_asj_XX=0;AC_sas_XY=18;AN_sas_XY=3670;AF_sas_XY=0.00490463;nhomalt_sas_XY=0;AC_non_neuro_fin=154;AN_non_neuro_fin=6974;AF_non_neuro_fin=0.0220820;nhomalt_non_neuro_fin=2;AC_non_topmed_amr_XY=419;AN_non_topmed_amr_XY=7572;AF_non_topmed_amr_XY=0.0553354;nhomalt_non_topmed_amr_XY=15;AC_non_neuro_XX=833;AN_non_neuro_XX=70476;AF_non_neuro_XX=0.0118196;nhomalt_non_neuro_XX=26;AC_fin_XX=41;AN_fin_XX=2570;AF_fin_XX=0.0159533;nhomalt_fin_XX=0;AC_controls_and_biobanks_asj_XX=0;AN_controls_and_biobanks_asj_XX=84;AF_controls_and_biobanks_asj_XX=0.00000;nhomalt_controls_and_biobanks_asj_XX=0;AC_non_v2_raw=1538;AN_non_v2_raw=114648;AF_non_v2_raw=0.0134150;nhomalt_non_v2_raw=40;AC_non_v2_asj=0;AN_non_v2_asj=3076;AF_non_v2_asj=0.00000;nhomalt_non_v2_asj=0;AC_nfe_XX=319;AN_nfe_XX=39354;AF_nfe_XX=0.00810591;nhomalt_nfe_XX=2;AC_controls_and_biobanks_raw=603;AN_controls_and_biobanks_raw=32922;AF_controls_and_biobanks_raw=0.0183160;nhomalt_controls_and_biobanks_raw=27;AC_controls_and_biobanks_ami=0;AN_controls_and_biobanks_ami=60;AF_controls_and_biobanks_ami=0.00000;nhomalt_controls_and_biobanks_ami=0;AC_non_topmed_eas=1;AN_non_topmed_eas=3748;AF_non_topmed_eas=0.000266809;nhomalt_non_topmed_eas=0;AC_non_v2_amr=799;AN_non_v2_amr=13728;AF_non_v2_amr=0.0582022;nhomalt_non_v2_amr=33;AC_non_neuro_sas=22;AN_non_neuro_sas=4832;AF_non_neuro_sas=0.00455298;nhomalt_non_neuro_sas=0;AC_non_cancer_fin_XY=183;AN_non_cancer_fin_XY=8042;AF_non_cancer_fin_XY=0.0227555;nhomalt_non_cancer_fin_XY=4;AC_non_cancer_nfe_XY=229;AN_non_cancer_nfe_XY=26716;AF_non_cancer_nfe_XY=0.00857164;nhomalt_non_cancer_nfe_XY=2;AC_non_v2_oth=26;AN_non_v2_oth=1860;AF_non_v2_oth=0.0139785;nhomalt_non_v2_oth=1;AC_ami=0;AN_ami=912;AF_ami=0.00000;nhomalt_ami=0;AC_non_cancer_XY=979;AN_non_cancer_XY=71828;AF_non_cancer_XY=0.0136298;nhomalt_non_cancer_XY=27;AC_non_v2_sas=17;AN_non_v2_sas=3888;AF_non_v2_sas=0.00437243;nhomalt_non_v2_sas=0;AC_non_topmed_afr_XX=32;AN_non_topmed_afr_XX=11918;AF_non_topmed_afr_XX=0.00268501;nhomalt_non_topmed_afr_XX=0;AC_sas=22;AN_sas=4834;AF_sas=0.00455110;nhomalt_sas=0;AC_non_neuro_nfe_XX=310;AN_non_neuro_nfe_XX=37640;AF_non_neuro_nfe_XX=0.00823592;nhomalt_non_neuro_nfe_XX=2;AC_non_topmed_ami_XX=0;AN_non_topmed_ami_XX=68;AF_non_topmed_ami_XX=0.00000;nhomalt_non_topmed_ami_XX=0;AC_ami_XY=0;AN_ami_XY=442;AF_ami_XY=0.00000;nhomalt_ami_XY=0;AC_oth_XX=10;AN_oth_XX=1034;AF_oth_XX=0.00967118;nhomalt_oth_XX=0;AC_non_cancer_eas=1;AN_non_cancer_eas=4954;AF_non_cancer_eas=0.000201857;nhomalt_non_cancer_eas=0;AC_non_topmed_XY=778;AN_non_topmed_XY=47894;AF_non_topmed_XY=0.0162442;nhomalt_non_topmed_XY=20;AC_non_v2_ami=0;AN_non_v2_ami=910;AF_non_v2_ami=0.00000;nhomalt_non_v2_ami=0;AC_non_neuro=1754;AN_non_neuro=134724;AF_non_neuro=0.0130192;nhomalt_non_neuro=50;AC_amr_XX=463;AN_amr_XX=6790;AF_amr_XX=0.0681885;nhomalt_amr_XX=24;AC_controls_and_biobanks_nfe_XY=31;AN_controls_and_biobanks_nfe_XY=3588;AF_controls_and_biobanks_nfe_XY=0.00863991;nhomalt_controls_and_biobanks_nfe_XY=0;AC_controls_and_biobanks_eas=1;AN_controls_and_biobanks_eas=2424;AF_controls_and_biobanks_eas=0.000412541;nhomalt_controls_and_biobanks_eas=0;AC_XX=897;AN_XX=77822;AF_XX=0.0115263;nhomalt_XX=26;AC_non_cancer_oth_XY=15;AN_non_cancer_oth_XY=1010;AF_non_cancer_oth_XY=0.0148515;nhomalt_non_cancer_oth_XY=1;AC_non_v2_XY=799;AN_non_v2_XY=54382;AF_non_v2_XY=0.0146924;nhomalt_non_v2_XY=21;AC_non_topmed_amr_XX=346;AN_non_topmed_amr_XX=5320;AF_non_topmed_amr_XX=0.0650376;nhomalt_non_topmed_amr_XX=18;AC_fin=224;AN_fin=10612;AF_fin=0.0211082;nhomalt_fin=4;AC_controls_and_biobanks_nfe_XX=21;AN_controls_and_biobanks_nfe_XX=3256;AF_controls_and_biobanks_nfe_XX=0.00644963;nhomalt_controls_and_biobanks_nfe_XX=0;AC_controls_and_biobanks_afr=33;AN_controls_and_biobanks_afr=9094;AF_controls_and_biobanks_afr=0.00362877;nhomalt_controls_and_biobanks_afr=0;AC_asj_XX=0;AN_asj_XX=1866;AF_asj_XX=0.00000;nhomalt_asj_XX=0;AC_non_topmed_mid=0;AN_non_topmed_mid=272;AF_non_topmed_mid=0.00000;nhomalt_non_topmed_mid=0;AC_non_cancer_sas_XY=18;AN_non_cancer_sas_XY=3656;AF_non_cancer_sas_XY=0.00492341;nhomalt_non_cancer_sas_XY=0;AC_sas_XX=4;AN_sas_XX=1164;AF_sas_XX=0.00343643;nhomalt_sas_XX=0;AC_non_topmed=1264;AN_non_topmed=80704;AF_non_topmed=0.0156622;nhomalt_non_topmed=39;AC_non_v2_oth_XX=10;AN_non_v2_oth_XX=934;AF_non_v2_oth_XX=0.0107066;nhomalt_non_v2_oth_XX=0;AC_non_neuro_ami_XY=0;AN_non_neuro_ami_XY=430;AF_non_neuro_ami_XY=0.00000;nhomalt_non_neuro_ami_XY=0;AC_controls_and_biobanks_afr_XY=19;AN_controls_and_biobanks_afr_XY=4384;AF_controls_and_biobanks_afr_XY=0.00433394;nhomalt_controls_and_biobanks_afr_XY=0;AC_controls_and_biobanks_amr_XX=205;AN_controls_and_biobanks_amr_XX=2480;AF_controls_and_biobanks_amr_XX=0.0826613;nhomalt_controls_and_biobanks_amr_XX=15;AC_non_topmed_amr=765;AN_non_topmed_amr=12892;AF_non_topmed_amr=0.0593391;nhomalt_non_topmed_amr=33;AC_controls_and_biobanks_sas_XX=4;AN_controls_and_biobanks_sas_XX=842;AF_controls_and_biobanks_sas_XX=0.00475059;nhomalt_controls_and_biobanks_sas_XX=0;AC_controls_and_biobanks_amr=374;AN_controls_and_biobanks_amr=4690;AF_controls_and_biobanks_amr=0.0797441;nhomalt_controls_and_biobanks_amr=25;AC_non_neuro_fin_XX=6;AN_non_neuro_fin_XX=658;AF_non_neuro_fin_XX=0.00911854;nhomalt_non_neuro_fin_XX=0;AC_non_cancer_raw=1867;AN_non_cancer_raw=148014;AF_non_cancer_raw=0.0126137;nhomalt_non_cancer_raw=53;AC_non_neuro_mid=0;AN_non_neuro_mid=310;AF_non_neuro_mid=0.00000;nhomalt_non_neuro_mid=0;AC_non_v2_asj_XY=0;AN_non_v2_asj_XY=1388;AF_non_v2_asj_XY=0.00000;nhomalt_non_v2_asj_XY=0;AC_non_v2_afr=83;AN_non_v2_afr=28718;AF_non_v2_afr=0.00289017;nhomalt_non_v2_afr=0;AC_non_neuro_fin_XY=148;AN_non_neuro_fin_XY=6316;AF_non_neuro_fin_XY=0.0234326;nhomalt_non_neuro_fin_XY=2;AC_non_cancer_afr=116;AN_non_cancer_afr=41112;AF_non_cancer_afr=0.00282156;nhomalt_non_cancer_afr=1;AC_non_topmed_sas_XY=16;AN_non_topmed_sas_XY=3648;AF_non_topmed_sas_XY=0.00438596;nhomalt_non_topmed_sas_XY=0;AC_mid_XY=0;AN_mid_XY=152;AF_mid_XY=0.00000;nhomalt_mid_XY=0;AC_non_v2_oth_XY=16;AN_non_v2_oth_XY=926;AF_non_v2_oth_XY=0.0172786;nhomalt_non_v2_oth_XY=1;AC_controls_and_biobanks_fin=122;AN_controls_and_biobanks_fin=5486;AF_controls_and_biobanks_fin=0.0222384;nhomalt_controls_and_biobanks_fin=2;AC_non_neuro_eas_XY=1;AN_non_neuro_eas_XY=2914;AF_non_neuro_eas_XY=0.000343171;nhomalt_non_neuro_eas_XY=0;AC_non_topmed_eas_XX=0;AN_non_topmed_eas_XX=1402;AF_non_topmed_eas_XX=0.00000;nhomalt_non_topmed_eas_XX=0;AC_non_v2_afr_XX=40;AN_non_v2_afr_XX=15810;AF_non_v2_afr_XX=0.00253004;nhomalt_non_v2_afr_XX=0;AC_non_neuro_amr_XX=452;AN_non_neuro_amr_XX=6600;AF_non_neuro_amr_XX=0.0684848;nhomalt_non_neuro_amr_XX=24;AC_non_cancer_ami=0;AN_non_cancer_ami=912;AF_non_cancer_ami=0.00000;nhomalt_non_cancer_ami=0;AC_XY=1011;AN_XY=74316;AF_XY=0.0136041;nhomalt_XY=28;AC_non_topmed_asj_XX=0;AN_non_topmed_asj_XX=278;AF_non_topmed_asj_XX=0.00000;nhomalt_non_topmed_asj_XX=0;AC_non_topmed_eas_XY=1;AN_non_topmed_eas_XY=2346;AF_non_topmed_eas_XY=0.000426257;nhomalt_non_topmed_eas_XY=0;AC_non_v2_eas_XY=1;AN_non_v2_eas_XY=1508;AF_non_v2_eas_XY=0.000663130;nhomalt_non_v2_eas_XY=0;AC_eas=1;AN_eas=5190;AF_eas=0.000192678;nhomalt_eas=0;AC_asj_XY=0;AN_asj_XY=1604;AF_asj_XY=0.00000;nhomalt_asj_XY=0;AC_non_v2_eas_XX=0;AN_non_v2_eas_XX=1308;AF_non_v2_eas_XX=0.00000;nhomalt_non_v2_eas_XX=0;AC_controls_and_biobanks_mid_XY=0;AN_controls_and_biobanks_mid_XY=112;AF_controls_and_biobanks_mid_XY=0.00000;nhomalt_controls_and_biobanks_mid_XY=0;AC_fin_XY=183;AN_fin_XY=8042;AF_fin_XY=0.0227555;nhomalt_fin_XY=4;AC_non_topmed_nfe=168;AN_non_topmed_nfe=21030;AF_non_topmed_nfe=0.00798859;nhomalt_non_topmed_nfe=1;AC_amr=952;AN_amr=15266;AF_amr=0.0623608;nhomalt_amr=44;AC_non_neuro_ami=0;AN_non_neuro_ami=862;AF_non_neuro_ami=0.00000;nhomalt_non_neuro_ami=0;AC_non_cancer_nfe_XX=311;AN_non_cancer_nfe_XX=38080;AF_non_cancer_nfe_XX=0.00816702;nhomalt_non_cancer_nfe_XX=2;AC_non_cancer_mid=0;AN_non_cancer_mid=304;AF_non_cancer_mid=0.00000;nhomalt_non_cancer_mid=0;AC_non_v2_mid_XY=0;AN_non_v2_mid_XY=146;AF_non_v2_mid_XY=0.00000;nhomalt_non_v2_mid_XY=0;AC_controls_and_biobanks_amr_XY=169;AN_controls_and_biobanks_amr_XY=2210;AF_controls_and_biobanks_amr_XY=0.0764706;nhomalt_controls_and_biobanks_amr_XY=10;AC_non_cancer_ami_XY=0;AN_non_cancer_ami_XY=442;AF_non_cancer_ami_XY=0.00000;nhomalt_non_cancer_ami_XY=0;AC_non_neuro_asj_XX=0;AN_non_neuro_asj_XX=1830;AF_non_neuro_asj_XX=0.00000;nhomalt_non_neuro_asj_XX=0;AC_afr=118;AN_afr=41434;AF_afr=0.00284790;nhomalt_afr=1;AC_non_v2_sas_XX=3;AN_non_v2_sas_XX=790;AF_non_v2_sas_XX=0.00379747;nhomalt_non_v2_sas_XX=0;AC_non_neuro_afr_XX=51;AN_non_neuro_afr_XX=18714;AF_non_neuro_afr_XX=0.00272523;nhomalt_non_neuro_afr_XX=0;AC_non_cancer_sas=22;AN_non_cancer_sas=4802;AF_non_cancer_sas=0.00458142;nhomalt_non_cancer_sas=0;AC_non_topmed_fin=224;AN_non_topmed_fin=10520;AF_non_topmed_fin=0.0212928;nhomalt_non_topmed_fin=4;AC_non_cancer_asj_XY=0;AN_non_cancer_asj_XY=1558;AF_non_cancer_asj_XY=0.00000;nhomalt_non_cancer_asj_XY=0;AC_non_cancer_mid_XY=0;AN_non_cancer_mid_XY=144;AF_non_cancer_mid_XY=0.00000;nhomalt_non_cancer_mid_XY=0;AC_raw=1910;AN_raw=152266;AF_raw=0.0125438;nhomalt_raw=54;AC_non_topmed_XX=486;AN_non_topmed_XX=32810;AF_non_topmed_XX=0.0148126;nhomalt_non_topmed_XX=19;AC_ami_XX=0;AN_ami_XX=470;AF_ami_XX=0.00000;nhomalt_ami_XX=0;AC_eas_XY=1;AN_eas_XY=2914;AF_eas_XY=0.000343171;nhomalt_eas_XY=0;AC_controls_and_biobanks_mid=0;AN_controls_and_biobanks_mid=246;AF_controls_and_biobanks_mid=0.00000;nhomalt_controls_and_biobanks_mid=0;AC_non_v2_nfe_XY=168;AN_non_v2_nfe_XY=20160;AF_non_v2_nfe_XY=0.00833333;nhomalt_non_v2_nfe_XY=1;AC_controls_and_biobanks_sas=14;AN_controls_and_biobanks_sas=3114;AF_controls_and_biobanks_sas=0.00449583;nhomalt_controls_and_biobanks_sas=0;AC_non_v2_eas=1;AN_non_v2_eas=2816;AF_non_v2_eas=0.000355114;nhomalt_non_v2_eas=0;AC_mid=0;AN_mid=316;AF_mid=0.00000;nhomalt_mid=0;AC_oth_XY=16;AN_oth_XY=1056;AF_oth_XY=0.0151515;nhomalt_oth_XY=1;AC_non_cancer_nfe=540;AN_non_cancer_nfe=64796;AF_non_cancer_nfe=0.00833385;nhomalt_non_cancer_nfe=4;AC_non_neuro_eas_XX=0;AN_non_neuro_eas_XX=2276;AF_non_neuro_eas_XX=0.00000;nhomalt_non_neuro_eas_XX=0;AC_non_neuro_sas_XY=18;AN_non_neuro_sas_XY=3668;AF_non_neuro_sas_XY=0.00490731;nhomalt_non_neuro_sas_XY=0;AC_non_cancer_ami_XX=0;AN_non_cancer_ami_XX=470;AF_non_cancer_ami_XX=0.00000;nhomalt_non_cancer_ami_XX=0;AC_mid_XX=0;AN_mid_XX=164;AF_mid_XX=0.00000;nhomalt_mid_XX=0;AC_non_topmed_asj=0;AN_non_topmed_asj=996;AF_non_topmed_asj=0.00000;nhomalt_non_topmed_asj=0;AC_non_v2_asj_XX=0;AN_non_v2_asj_XX=1688;AF_non_v2_asj_XX=0.00000;nhomalt_non_v2_asj_XX=0;nhomalt=54;AC_non_v2_amr_XY=408;AN_non_v2_amr_XY=7698;AF_non_v2_amr_XY=0.0530008;nhomalt_non_v2_amr_XY=15;AC_non_cancer_amr_XX=461;AN_non_cancer_amr_XX=6738;AF_non_cancer_amr_XX=0.0684179;nhomalt_non_cancer_amr_XX=24;AC_controls_and_biobanks_afr_XX=14;AN_controls_and_biobanks_afr_XX=4710;AF_controls_and_biobanks_afr_XX=0.00297240;nhomalt_controls_and_biobanks_afr_XX=0;AC_asj=0;AN_asj=3470;AF_asj=0.00000;nhomalt_asj=0;AC_non_topmed_asj_XY=0;AN_non_topmed_asj_XY=718;AF_non_topmed_asj_XY=0.00000;nhomalt_non_topmed_asj_XY=0;AC_non_v2_fin_XX=19;AN_non_v2_fin_XX=1198;AF_non_v2_fin_XX=0.0158598;nhomalt_non_v2_fin_XX=0;AC_non_topmed_ami=0;AN_non_topmed_ami=112;AF_non_topmed_ami=0.00000;nhomalt_non_topmed_ami=0;AC_controls_and_biobanks_eas_XX=0;AN_controls_and_biobanks_eas_XX=1030;AF_controls_and_biobanks_eas_XX=0.00000;nhomalt_controls_and_biobanks_eas_XX=0;AC_controls_and_biobanks_fin_XX=6;AN_controls_and_biobanks_fin_XX=490;AF_controls_and_biobanks_fin_XX=0.0122449;nhomalt_controls_and_biobanks_fin_XX=0;AC_non_topmed_raw=1266;AN_non_topmed_raw=80824;AF_non_topmed_raw=0.0156637;nhomalt_non_topmed_raw=39;AC_non_cancer_eas_XY=1;AN_non_cancer_eas_XY=2782;AF_non_cancer_eas_XY=0.000359454;nhomalt_non_cancer_eas_XY=0;AC_non_cancer=1865;AN_non_cancer=147892;AF_non_cancer=0.0126106;nhomalt_non_cancer=53;AC_controls_and_biobanks_ami_XY=0;AN_controls_and_biobanks_ami_XY=30;AF_controls_and_biobanks_ami_XY=0.00000;nhomalt_controls_and_biobanks_ami_XY=0;AC_controls_and_biobanks_mid_XX=0;AN_controls_and_biobanks_mid_XX=134;AF_controls_and_biobanks_mid_XX=0.00000;nhomalt_controls_and_biobanks_mid_XX=0;AC_non_v2_afr_XY=43;AN_non_v2_afr_XY=12908;AF_non_v2_afr_XY=0.00333127;nhomalt_non_v2_afr_XY=0;AC_non_v2_sas_XY=14;AN_non_v2_sas_XY=3098;AF_non_v2_sas_XY=0.00451904;nhomalt_non_v2_sas_XY=0;AC_non_v2_fin=168;AN_non_v2_fin=7308;AF_non_v2_fin=0.0229885;nhomalt_non_v2_fin=4;AC_non_neuro_oth=25;AN_non_neuro_oth=2000;AF_non_neuro_oth=0.0125000;nhomalt_non_neuro_oth=1;AC_non_cancer_sas_XX=4;AN_non_cancer_sas_XX=1146;AF_non_cancer_sas_XX=0.00349040;nhomalt_non_cancer_sas_XX=0;AC_non_neuro_asj=0;AN_non_neuro_asj=3386;AF_non_neuro_asj=0.00000;nhomalt_non_neuro_asj=0;AC_non_topmed_afr=71;AN_non_topmed_afr=24812;AF_non_topmed_afr=0.00286152;nhomalt_non_topmed_afr=1;AC_non_topmed_afr_XY=39;AN_non_topmed_afr_XY=12894;AF_non_topmed_afr_XY=0.00302466;nhomalt_non_topmed_afr_XY=1;AC_non_neuro_eas=1;AN_non_neuro_eas=5190;AF_non_neuro_eas=0.000192678;nhomalt_non_neuro_eas=0;AC_afr_XX=60;AN_afr_XX=22134;AF_afr_XX=0.00271076;nhomalt_afr_XX=0;AC_non_neuro_mid_XY=0;AN_non_neuro_mid_XY=146;AF_non_neuro_mid_XY=0.00000;nhomalt_non_neuro_mid_XY=0;AC_non_topmed_fin_XX=41;AN_non_topmed_fin_XX=2512;AF_non_topmed_fin_XX=0.0163217;nhomalt_non_topmed_fin_XX=0;AC_non_cancer_amr=937;AN_non_cancer_amr=15078;AF_non_cancer_amr=0.0621435;nhomalt_non_cancer_amr=43;AC_non_v2_ami_XX=0;AN_non_v2_ami_XX=470;AF_non_v2_ami_XX=0.00000;nhomalt_non_v2_ami_XX=0;AC_afr_XY=58;AN_afr_XY=19300;AF_afr_XY=0.00300518;nhomalt_afr_XY=1;AC_non_v2_mid_XX=0;AN_non_v2_mid_XX=162;AF_non_v2_mid_XX=0.00000;nhomalt_non_v2_mid_XX=0;AC_non_topmed_fin_XY=183;AN_non_topmed_fin_XY=8008;AF_non_topmed_fin_XY=0.0228521;nhomalt_non_topmed_fin_XY=4;AC_non_neuro_amr_XY=469;AN_non_neuro_amr_XY=8220;AF_non_neuro_amr_XY=0.0570560;nhomalt_non_neuro_amr_XY=19;AC_non_topmed_mid_XX=0;AN_non_topmed_mid_XX=142;AF_non_topmed_mid_XX=0.00000;nhomalt_non_topmed_mid_XX=0;AC_controls_and_biobanks_asj_XY=0;AN_controls_and_biobanks_asj_XY=52;AF_controls_and_biobanks_asj_XY=0.00000;nhomalt_controls_and_biobanks_asj_XY=0;AC_non_v2_fin_XY=149;AN_non_v2_fin_XY=6110;AF_non_v2_fin_XY=0.0243863;nhomalt_non_v2_fin_XY=4;AC_controls_and_biobanks_ami_XX=0;AN_controls_and_biobanks_ami_XX=30;AF_controls_and_biobanks_ami_XX=0.00000;nhomalt_controls_and_biobanks_ami_XX=0;AC_eas_XX=0;AN_eas_XX=2276;AF_eas_XX=0.00000;nhomalt_eas_XX=0;AC_non_cancer_amr_XY=476;AN_non_cancer_amr_XY=8340;AF_non_cancer_amr_XY=0.0570743;nhomalt_non_cancer_amr_XY=19;AC_non_neuro_ami_XX=0;AN_non_neuro_ami_XX=432;AF_non_neuro_ami_XX=0.00000;nhomalt_non_neuro_ami_XX=0;AC_controls_and_biobanks=603;AN_controls_and_biobanks=32882;AF_controls_and_biobanks=0.0183383;nhomalt_controls_and_biobanks=27;AC_controls_and_biobanks_oth=7;AN_controls_and_biobanks_oth=788;AF_controls_and_biobanks_oth=0.00888325;nhomalt_controls_and_biobanks_oth=0;AC_nfe_XY=246;AN_nfe_XY=28660;AF_nfe_XY=0.00858339;nhomalt_nfe_XY=2;AC_non_cancer_afr_XX=59;AN_non_cancer_afr_XX=21974;AF_non_cancer_afr_XX=0.00268499;nhomalt_non_cancer_afr_XX=0;AC_controls_and_biobanks_sas_XY=10;AN_controls_and_biobanks_sas_XY=2272;AF_controls_and_biobanks_sas_XY=0.00440141;nhomalt_controls_and_biobanks_sas_XY=0;AC_non_cancer_oth=25;AN_non_cancer_oth=2020;AF_non_cancer_oth=0.0123762;nhomalt_non_cancer_oth=1;AC_non_topmed_oth=15;AN_non_topmed_oth=1516;AF_non_topmed_oth=0.00989446;nhomalt_non_topmed_oth=0;AC_non_topmed_nfe_XY=108;AN_non_topmed_nfe_XY=11708;AF_non_topmed_nfe_XY=0.00922446;nhomalt_non_topmed_nfe_XY=0;AC_non_topmed_sas_XX=4;AN_non_topmed_sas_XX=1158;AF_non_topmed_sas_XX=0.00345423;nhomalt_non_topmed_sas_XX=0;AC_non_v2_nfe=442;AN_non_v2_nfe=51942;AF_non_v2_nfe=0.00850949;nhomalt_non_v2_nfe=2;AC_non_topmed_oth_XX=3;AN_non_topmed_oth_XX=690;AF_non_topmed_oth_XX=0.00434783;nhomalt_non_topmed_oth_XX=0;AC_non_cancer_mid_XX=0;AN_non_cancer_mid_XX=160;AF_non_cancer_mid_XX=0.00000;nhomalt_non_cancer_mid_XX=0;AC_controls_and_biobanks_nfe=52;AN_controls_and_biobanks_nfe=6844;AF_controls_and_biobanks_nfe=0.00759790;nhomalt_controls_and_biobanks_nfe=0;AC_controls_and_biobanks_oth_XY=5;AN_controls_and_biobanks_oth_XY=420;AF_controls_and_biobanks_oth_XY=0.0119048;nhomalt_controls_and_biobanks_oth_XY=0;AC_controls_and_biobanks_fin_XY=116;AN_controls_and_biobanks_fin_XY=4996;AF_controls_and_biobanks_fin_XY=0.0232186;nhomalt_controls_and_biobanks_fin_XY=2;AC_non_v2_amr_XX=391;AN_non_v2_amr_XX=6030;AF_non_v2_amr_XX=0.0648425;nhomalt_non_v2_amr_XX=18;AC_non_cancer_asj=0;AN_non_cancer_asj=3302;AF_non_cancer_asj=0.00000;nhomalt_non_cancer_asj=0;AC_non_cancer_oth_XX=10;AN_non_cancer_oth_XX=1010;AF_non_cancer_oth_XX=0.00990099;nhomalt_non_cancer_oth_XX=0;AC_non_neuro_amr=921;AN_non_neuro_amr=14820;AF_non_neuro_amr=0.0621457;nhomalt_non_neuro_amr=43;AC_non_cancer_XX=886;AN_non_cancer_XX=76064;AF_non_cancer_XX=0.0116481;nhomalt_non_cancer_XX=26;AC_non_v2_ami_XY=0;AN_non_v2_ami_XY=440;AF_non_v2_ami_XY=0.00000;nhomalt_non_v2_ami_XY=0;AC_non_neuro_raw=1756;AN_non_neuro_raw=134842;AF_non_neuro_raw=0.0130226;nhomalt_non_neuro_raw=50;AC_non_neuro_afr=96;AN_non_neuro_afr=32458;AF_non_neuro_afr=0.00295767;nhomalt_non_neuro_afr=0;AC_non_topmed_ami_XY=0;AN_non_topmed_ami_XY=44;AF_non_topmed_ami_XY=0.00000;nhomalt_non_topmed_ami_XY=0;AC_non_neuro_oth_XY=15;AN_non_neuro_oth_XY=1002;AF_non_neuro_oth_XY=0.0149701;nhomalt_non_neuro_oth_XY=1;AC_non_neuro_oth_XX=10;AN_non_neuro_oth_XX=998;AF_non_neuro_oth_XX=0.0100200;nhomalt_non_neuro_oth_XX=0;AC_controls_and_biobanks_XX=252;AN_controls_and_biobanks_XX=13424;AF_controls_and_biobanks_XX=0.0187723;nhomalt_controls_and_biobanks_XX=15;AC_non_cancer_afr_XY=57;AN_non_cancer_afr_XY=19138;AF_non_cancer_afr_XY=0.00297837;nhomalt_non_cancer_afr_XY=1;AC_non_cancer_fin=224;AN_non_cancer_fin=10612;AF_non_cancer_fin=0.0211082;nhomalt_non_cancer_fin=4;AC_controls_and_biobanks_asj=0;AN_controls_and_biobanks_asj=136;AF_controls_and_biobanks_asj=0.00000;nhomalt_controls_and_biobanks_asj=0;AC_non_topmed_oth_XY=12;AN_non_topmed_oth_XY=826;AF_non_topmed_oth_XY=0.0145278;nhomalt_non_topmed_oth_XY=0;AC_non_neuro_mid_XX=0;AN_non_neuro_mid_XX=164;AF_non_neuro_mid_XX=0.00000;nhomalt_non_neuro_mid_XX=0;AC_controls_and_biobanks_oth_XX=2;AN_controls_and_biobanks_oth_XX=368;AF_controls_and_biobanks_oth_XX=0.00543478;nhomalt_controls_and_biobanks_oth_XX=0;AC_non_neuro_XY=921;AN_non_neuro_XY=64248;AF_non_neuro_XY=0.0143351;nhomalt_non_neuro_XY=24;AC_nfe=565;AN_nfe=68014;AF_nfe=0.00830711;nhomalt_nfe=4;AC_popmax=952;AN_popmax=15266;AF_popmax=0.0623608;nhomalt_popmax=44;faf95_sas=0.00308054;faf99_sas=0.00260095;faf95_eas=0.00000;faf99_eas=0.00000;faf95_amr=0.0590734;faf99_amr=0.0577549;faf95_afr=0.00243043;faf99_afr=0.00227280;faf95=0.0120726;faf99=0.0118829;faf95_nfe=0.00774018;faf99_nfe=0.00751534;age_hist_het_bin_freq=21|26|34|65|90|74|75|59|43|17;age_hist_het_n_smaller=49;age_hist_het_n_larger=10;age_hist_hom_bin_freq=0|1|0|5|3|3|2|2|0|0;age_hist_hom_n_smaller=1;age_hist_hom_n_larger=0;FS=0.00000;MQ=59.9985;MQRankSum=-0.0170000;QD=14.4180;ReadPosRankSum=0.335000;VarDP=154183;QUALapprox=2223007;AS_FS=0.00000;AS_MQ=59.9985;AS_MQRankSum=-0.0170000;AS_pab_max=1.00000;AS_QD=14.4180;AS_ReadPosRankSum=0.337000;AS_SOR=0.696785;InbreedingCoeff=0.0445596;AS_SB_TABLE=37329,37371|39647,39836;AS_VQSLOD=22.6787;AS_culprit=AS_MQ;POSITIVE_TRAIN_SITE;allele_type=snv;n_alt_alleles=1;variant_type=snv;gq_hist_alt_bin_freq=0|0|0|0|0|1|0|0|1|0|1|3|3|1|2|4|3|5|6|1824;gq_hist_all_bin_freq=0|0|0|0|13298|12046|9340|7303|8263|6339|4838|4522|2823|1807|1317|809|547|323|209|2285;dp_hist_alt_bin_freq=0|0|15|95|219|373|403|369|203|104|44|21|5|0|1|1|1|0|0|0;dp_hist_alt_n_larger=0;dp_hist_all_bin_freq=0|0|204|1904|7330|13167|30864|18689|2732|530|288|160|74|55|34|17|7|4|3|1;dp_hist_all_n_smaller=0;dp_hist_all_n_larger=6;ab_hist_alt_bin_freq=0|0|0|0|3|23|80|154|292|304|433|258|169|64|13|4|3|0|0|0;cadd_raw_score=7.30662;cadd_phred=37.0000;revel_score=0.0680000;splice_ai_max_ds=0.00000;splice_ai_consequence=no_consequence;vep=T|stop_gained|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000265379|protein_coding|36/43||ENST00000265379.10:c.6136C>T|ENSP00000265379.7:p.Gln2046Ter|6630|6136|2046|Q/*|Caa/Taa|1||1|SNV||HGNC|HGNC:26674|YES|5|P1||ENSP00000265379|||||||Gene3D:3&Pfam:PF00092&PROSITE_profiles:PS50234&PANTHER:PTHR22588&PANTHER:PTHR22588&SMART:SM00327&Superfamily:SSF53300&CDD:cd01450||||||HC|||PERCENTILE:0.78305257784584,GERP_DIST:-3212.95033271089,BP_DIST:2503,DIST_FROM_LAST_EXON:2475,50_BP_RULE:PASS,ANN_ORF:488.393,MAX_ORF:488.393,T|stop_gained&NMD_transcript_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000312481|nonsense_mediated_decay|35/42||ENST00000312481.11:c.6148C>T|ENSP00000309762.7:p.Gln2050Ter|6642|6148|2050|Q/*|Caa/Taa|1||1|SNV||HGNC|HGNC:26674||1|||ENSP00000309762||||||||||||||||,T|upstream_gene_variant|MODIFIER|COL6A5|ENSG00000172752|Transcript|ENST00000373157|protein_coding||||||||||1|24|1|SNV||HGNC|HGNC:26674||2|||ENSP00000362250||||||||||||||||,T|upstream_gene_variant|MODIFIER|COL6A5|ENSG00000172752|Transcript|ENST00000512482|protein_coding||||||||||1|2998|1|SNV||HGNC|HGNC:26674||5|||ENSP00000424968||||||||||||||||,T|stop_gained|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000512836|protein_coding|3/8||ENST00000512836.5:c.904C>T|ENSP00000422898.1:p.Gln302Ter|902|904|302|Q/*|Caa/Taa|1||1|SNV||HGNC|HGNC:26674||2|||ENSP00000422898|||||||Gene3D:3&Pfam:PF00092&PROSITE_profiles:PS50234&PANTHER:PTHR22588&PANTHER:PTHR22588&SMART:SM00327&Superfamily:SSF53300&CDD:cd01450||||||HC|||PERCENTILE:0.387152034261242,GERP_DIST:-797.622920531034,BP_DIST:1428,DIST_FROM_LAST_EXON:1422,50_BP_RULE:PASS,ANN_ORF:488.393,MAX_ORF:488.393,T|stop_gained|HIGH|COL6A5|256076|Transcript|NM_001278298.1|protein_coding|35/41||NM_001278298.1:c.6148C>T|NP_001265227.1:p.Gln2050Ter|6642|6148|2050|Q/*|Caa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||NP_001265227.1|||||||||||||HC|||PERCENTILE:0.783683875079669,GERP_DIST:-1109.51644750684,BP_DIST:1691,DIST_FROM_LAST_EXON:1666,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|COL6A5|256076|Transcript|NM_153264.6|protein_coding|35/40||NM_153264.6:c.6148C>T|NP_694996.5:p.Gln2050Ter|6642|6148|2050|Q/*|Caa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||NP_694996.5|||||||||||||HC|||PERCENTILE:0.810974805434639,GERP_DIST:-797.622920531034,BP_DIST:1428,DIST_FROM_LAST_EXON:1422,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|non_coding_transcript_exon_variant|MODIFIER|COL6A5|256076|Transcript|NR_022012.2|misc_RNA|35/42||NR_022012.2:n.6642C>T||6642|||||1||1|SNV||EntrezGene|HGNC:26674|YES||||||||||||||||||||,T|stop_gained|HIGH|COL6A5|256076|Transcript|XM_011512621.2|protein_coding|34/41||XM_011512621.2:c.6085C>T|XP_011510923.1:p.Gln2029Ter|6453|6085|2029|Q/*|Caa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510923.1|||||||||||||HC|||PERCENTILE:0.781631342324984,GERP_DIST:-1254.01617724672,BP_DIST:1780,DIST_FROM_LAST_EXON:1752,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT +chr3 130468818 rs115375867 G T . PASS AC=827;AN=152050;AF=0.00543900;popmax=sas;faf95_popmax=0.0100962;AC_non_v2_XX=344;AN_non_v2_XX=60132;AF_non_v2_XX=0.00572075;nhomalt_non_v2_XX=1;AC_non_cancer_fin_XX=15;AN_non_cancer_fin_XX=2572;AF_non_cancer_fin_XX=0.00583204;nhomalt_non_cancer_fin_XX=1;AC_non_neuro_nfe=515;AN_non_neuro_nfe=63838;AF_non_neuro_nfe=0.00806730;nhomalt_non_neuro_nfe=1;AC_non_neuro_afr_XY=20;AN_non_neuro_afr_XY=13738;AF_non_neuro_afr_XY=0.00145582;nhomalt_non_neuro_afr_XY=0;AC_non_neuro_nfe_XY=210;AN_non_neuro_nfe_XY=26232;AF_non_neuro_nfe_XY=0.00800549;nhomalt_non_neuro_nfe_XY=1;AC_controls_and_biobanks_eas_XY=1;AN_controls_and_biobanks_eas_XY=1384;AF_controls_and_biobanks_eas_XY=0.000722543;nhomalt_controls_and_biobanks_eas_XY=0;AC_non_neuro_sas_XX=15;AN_non_neuro_sas_XX=1166;AF_non_neuro_sas_XX=0.0128645;nhomalt_non_neuro_sas_XX=0;AC_non_v2=636;AN_non_v2=114470;AF_non_v2=0.00555604;nhomalt_non_v2=2;AC_non_topmed_nfe_XX=87;AN_non_topmed_nfe_XX=9318;AF_non_topmed_nfe_XX=0.00933677;nhomalt_non_topmed_nfe_XX=0;AC_non_v2_mid=0;AN_non_v2_mid=308;AF_non_v2_mid=0.00000;nhomalt_non_v2_mid=0;AC_non_topmed_sas=61;AN_non_topmed_sas=4800;AF_non_topmed_sas=0.0127083;nhomalt_non_topmed_sas=0;AC_non_cancer_eas_XX=0;AN_non_cancer_eas_XX=2166;AF_non_cancer_eas_XX=0.00000;nhomalt_non_cancer_eas_XX=0;AC_amr_XY=15;AN_amr_XY=8462;AF_amr_XY=0.00177263;nhomalt_amr_XY=0;AC_non_v2_nfe_XX=266;AN_non_v2_nfe_XX=31752;AF_non_v2_nfe_XX=0.00837743;nhomalt_non_v2_nfe_XX=0;AC_controls_and_biobanks_XY=99;AN_controls_and_biobanks_XY=19460;AF_controls_and_biobanks_XY=0.00508736;nhomalt_controls_and_biobanks_XY=0;AC_non_neuro_asj_XY=19;AN_non_neuro_asj_XY=1554;AF_non_neuro_asj_XY=0.0122265;nhomalt_non_neuro_asj_XY=0;AC_oth=12;AN_oth=2094;AF_oth=0.00573066;nhomalt_oth=0;AC_non_topmed_mid_XY=0;AN_non_topmed_mid_XY=130;AF_non_topmed_mid_XY=0.00000;nhomalt_non_topmed_mid_XY=0;AC_non_cancer_asj_XX=19;AN_non_cancer_asj_XX=1744;AF_non_cancer_asj_XX=0.0108945;nhomalt_non_cancer_asj_XX=0;AC_sas_XY=46;AN_sas_XY=3662;AF_sas_XY=0.0125614;nhomalt_sas_XY=0;AC_non_neuro_fin=48;AN_non_neuro_fin=6986;AF_non_neuro_fin=0.00687088;nhomalt_non_neuro_fin=0;AC_non_topmed_amr_XY=15;AN_non_topmed_amr_XY=7558;AF_non_topmed_amr_XY=0.00198465;nhomalt_non_topmed_amr_XY=0;AC_non_neuro_XX=390;AN_non_neuro_XX=70440;AF_non_neuro_XX=0.00553663;nhomalt_non_neuro_XX=0;AC_fin_XX=15;AN_fin_XX=2572;AF_fin_XX=0.00583204;nhomalt_fin_XX=1;AC_controls_and_biobanks_asj_XX=5;AN_controls_and_biobanks_asj_XX=84;AF_controls_and_biobanks_asj_XX=0.0595238;nhomalt_controls_and_biobanks_asj_XX=0;AC_non_v2_raw=637;AN_non_v2_raw=114646;AF_non_v2_raw=0.00555623;nhomalt_non_v2_raw=2;AC_non_v2_asj=35;AN_non_v2_asj=3074;AF_non_v2_asj=0.0113858;nhomalt_non_v2_asj=0;AC_nfe_XX=324;AN_nfe_XX=39320;AF_nfe_XX=0.00824008;nhomalt_nfe_XX=0;AC_controls_and_biobanks_raw=142;AN_controls_and_biobanks_raw=32920;AF_controls_and_biobanks_raw=0.00431349;nhomalt_controls_and_biobanks_raw=0;AC_controls_and_biobanks_ami=0;AN_controls_and_biobanks_ami=60;AF_controls_and_biobanks_ami=0.00000;nhomalt_controls_and_biobanks_ami=0;AC_non_topmed_eas=1;AN_non_topmed_eas=3726;AF_non_topmed_eas=0.000268384;nhomalt_non_topmed_eas=0;AC_non_v2_amr=24;AN_non_v2_amr=13704;AF_non_v2_amr=0.00175131;nhomalt_non_v2_amr=0;AC_non_neuro_sas=61;AN_non_neuro_sas=4826;AF_non_neuro_sas=0.0126399;nhomalt_non_neuro_sas=0;AC_non_cancer_fin_XY=56;AN_non_cancer_fin_XY=8052;AF_non_cancer_fin_XY=0.00695479;nhomalt_non_cancer_fin_XY=0;AC_non_cancer_nfe_XY=212;AN_non_cancer_nfe_XY=26700;AF_non_cancer_nfe_XY=0.00794007;nhomalt_non_cancer_nfe_XY=1;AC_non_v2_oth=10;AN_non_v2_oth=1864;AF_non_v2_oth=0.00536481;nhomalt_non_v2_oth=0;AC_ami=0;AN_ami=912;AF_ami=0.00000;nhomalt_ami=0;AC_non_cancer_XY=381;AN_non_cancer_XY=71778;AF_non_cancer_XY=0.00530803;nhomalt_non_cancer_XY=1;AC_non_v2_sas=51;AN_non_v2_sas=3884;AF_non_v2_sas=0.0131308;nhomalt_non_v2_sas=0;AC_non_topmed_afr_XX=15;AN_non_topmed_afr_XX=11932;AF_non_topmed_afr_XX=0.00125712;nhomalt_non_topmed_afr_XX=0;AC_sas=61;AN_sas=4828;AF_sas=0.0126346;nhomalt_sas=0;AC_non_neuro_nfe_XX=305;AN_non_neuro_nfe_XX=37606;AF_non_neuro_nfe_XX=0.00811041;nhomalt_non_neuro_nfe_XX=0;AC_non_topmed_ami_XX=0;AN_non_topmed_ami_XX=68;AF_non_topmed_ami_XX=0.00000;nhomalt_non_topmed_ami_XX=0;AC_ami_XY=0;AN_ami_XY=442;AF_ami_XY=0.00000;nhomalt_ami_XY=0;AC_oth_XX=9;AN_oth_XX=1034;AF_oth_XX=0.00870406;nhomalt_oth_XX=0;AC_non_cancer_eas=1;AN_non_cancer_eas=4936;AF_non_cancer_eas=0.000202593;nhomalt_non_cancer_eas=0;AC_non_topmed_XY=249;AN_non_topmed_XY=47872;AF_non_topmed_XY=0.00520137;nhomalt_non_topmed_XY=0;AC_non_v2_ami=0;AN_non_v2_ami=910;AF_non_v2_ami=0.00000;nhomalt_non_v2_ami=0;AC_non_neuro=747;AN_non_neuro=134640;AF_non_neuro=0.00554813;nhomalt_non_neuro=1;AC_amr_XX=12;AN_amr_XX=6780;AF_amr_XX=0.00176991;nhomalt_amr_XX=0;AC_controls_and_biobanks_nfe_XY=23;AN_controls_and_biobanks_nfe_XY=3594;AF_controls_and_biobanks_nfe_XY=0.00639955;nhomalt_controls_and_biobanks_nfe_XY=0;AC_controls_and_biobanks_eas=1;AN_controls_and_biobanks_eas=2406;AF_controls_and_biobanks_eas=0.000415628;nhomalt_controls_and_biobanks_eas=0;AC_XX=426;AN_XX=77786;AF_XX=0.00547656;nhomalt_XX=1;AC_non_cancer_oth_XY=3;AN_non_cancer_oth_XY=1014;AF_non_cancer_oth_XY=0.00295858;nhomalt_non_cancer_oth_XY=0;AC_non_v2_XY=292;AN_non_v2_XY=54338;AF_non_v2_XY=0.00537377;nhomalt_non_v2_XY=1;AC_non_topmed_amr_XX=10;AN_non_topmed_amr_XX=5312;AF_non_topmed_amr_XX=0.00188253;nhomalt_non_topmed_amr_XX=0;AC_fin=71;AN_fin=10624;AF_fin=0.00668298;nhomalt_fin=1;AC_controls_and_biobanks_nfe_XX=18;AN_controls_and_biobanks_nfe_XX=3252;AF_controls_and_biobanks_nfe_XX=0.00553506;nhomalt_controls_and_biobanks_nfe_XX=0;AC_controls_and_biobanks_afr=8;AN_controls_and_biobanks_afr=9096;AF_controls_and_biobanks_afr=0.000879507;nhomalt_controls_and_biobanks_afr=0;AC_asj_XX=22;AN_asj_XX=1866;AF_asj_XX=0.0117899;nhomalt_asj_XX=0;AC_non_topmed_mid=0;AN_non_topmed_mid=272;AF_non_topmed_mid=0.00000;nhomalt_non_topmed_mid=0;AC_non_cancer_sas_XY=44;AN_non_cancer_sas_XY=3648;AF_non_cancer_sas_XY=0.0120614;nhomalt_non_cancer_sas_XY=0;AC_sas_XX=15;AN_sas_XX=1166;AF_sas_XX=0.0128645;nhomalt_sas_XX=0;AC_non_topmed=402;AN_non_topmed=80680;AF_non_topmed=0.00498265;nhomalt_non_topmed=1;AC_non_v2_oth_XX=8;AN_non_v2_oth_XX=934;AF_non_v2_oth_XX=0.00856531;nhomalt_non_v2_oth_XX=0;AC_non_neuro_ami_XY=0;AN_non_neuro_ami_XY=430;AF_non_neuro_ami_XY=0.00000;nhomalt_non_neuro_ami_XY=0;AC_controls_and_biobanks_afr_XY=7;AN_controls_and_biobanks_afr_XY=4384;AF_controls_and_biobanks_afr_XY=0.00159672;nhomalt_controls_and_biobanks_afr_XY=0;AC_controls_and_biobanks_amr_XX=7;AN_controls_and_biobanks_amr_XX=2476;AF_controls_and_biobanks_amr_XX=0.00282714;nhomalt_controls_and_biobanks_amr_XX=0;AC_non_topmed_amr=25;AN_non_topmed_amr=12870;AF_non_topmed_amr=0.00194250;nhomalt_non_topmed_amr=0;AC_controls_and_biobanks_sas_XX=8;AN_controls_and_biobanks_sas_XX=842;AF_controls_and_biobanks_sas_XX=0.00950119;nhomalt_controls_and_biobanks_sas_XX=0;AC_controls_and_biobanks_amr=14;AN_controls_and_biobanks_amr=4682;AF_controls_and_biobanks_amr=0.00299018;nhomalt_controls_and_biobanks_amr=0;AC_non_neuro_fin_XX=5;AN_non_neuro_fin_XX=658;AF_non_neuro_fin_XX=0.00759878;nhomalt_non_neuro_fin_XX=0;AC_non_cancer_raw=793;AN_non_cancer_raw=148004;AF_non_cancer_raw=0.00535796;nhomalt_non_cancer_raw=2;AC_non_neuro_mid=0;AN_non_neuro_mid=310;AF_non_neuro_mid=0.00000;nhomalt_non_neuro_mid=0;AC_non_v2_asj_XY=17;AN_non_v2_asj_XY=1386;AF_non_v2_asj_XY=0.0122655;nhomalt_non_v2_asj_XY=0;AC_non_v2_afr=46;AN_non_v2_afr=28708;AF_non_v2_afr=0.00160234;nhomalt_non_v2_afr=0;AC_non_neuro_fin_XY=43;AN_non_neuro_fin_XY=6328;AF_non_neuro_fin_XY=0.00679520;nhomalt_non_neuro_fin_XY=0;AC_non_cancer_afr=60;AN_non_cancer_afr=41112;AF_non_cancer_afr=0.00145943;nhomalt_non_cancer_afr=0;AC_non_topmed_sas_XY=46;AN_non_topmed_sas_XY=3640;AF_non_topmed_sas_XY=0.0126374;nhomalt_non_topmed_sas_XY=0;AC_mid_XY=0;AN_mid_XY=152;AF_mid_XY=0.00000;nhomalt_mid_XY=0;AC_non_v2_oth_XY=2;AN_non_v2_oth_XY=930;AF_non_v2_oth_XY=0.00215054;nhomalt_non_v2_oth_XY=0;AC_controls_and_biobanks_fin=40;AN_controls_and_biobanks_fin=5498;AF_controls_and_biobanks_fin=0.00727537;nhomalt_controls_and_biobanks_fin=0;AC_non_neuro_eas_XY=1;AN_non_neuro_eas_XY=2900;AF_non_neuro_eas_XY=0.000344828;nhomalt_non_neuro_eas_XY=0;AC_non_topmed_eas_XX=0;AN_non_topmed_eas_XX=1394;AF_non_topmed_eas_XX=0.00000;nhomalt_non_topmed_eas_XX=0;AC_non_v2_afr_XX=24;AN_non_v2_afr_XX=15808;AF_non_v2_afr_XX=0.00151822;nhomalt_non_v2_afr_XX=0;AC_non_neuro_amr_XX=12;AN_non_neuro_amr_XX=6590;AF_non_neuro_amr_XX=0.00182094;nhomalt_non_neuro_amr_XX=0;AC_non_cancer_ami=0;AN_non_cancer_ami=912;AF_non_cancer_ami=0.00000;nhomalt_non_cancer_ami=0;AC_XY=401;AN_XY=74264;AF_XY=0.00539966;nhomalt_XY=1;AC_non_topmed_asj_XX=7;AN_non_topmed_asj_XX=278;AF_non_topmed_asj_XX=0.0251799;nhomalt_non_topmed_asj_XX=0;AC_non_topmed_eas_XY=1;AN_non_topmed_eas_XY=2332;AF_non_topmed_eas_XY=0.000428816;nhomalt_non_topmed_eas_XY=0;AC_non_v2_eas_XY=0;AN_non_v2_eas_XY=1496;AF_non_v2_eas_XY=0.00000;nhomalt_non_v2_eas_XY=0;AC_eas=1;AN_eas=5168;AF_eas=0.000193498;nhomalt_eas=0;AC_asj_XY=19;AN_asj_XY=1602;AF_asj_XY=0.0118602;nhomalt_asj_XY=0;AC_non_v2_eas_XX=0;AN_non_v2_eas_XX=1306;AF_non_v2_eas_XX=0.00000;nhomalt_non_v2_eas_XX=0;AC_controls_and_biobanks_mid_XY=0;AN_controls_and_biobanks_mid_XY=112;AF_controls_and_biobanks_mid_XY=0.00000;nhomalt_controls_and_biobanks_mid_XY=0;AC_fin_XY=56;AN_fin_XY=8052;AF_fin_XY=0.00695479;nhomalt_fin_XY=0;AC_non_topmed_nfe=181;AN_non_topmed_nfe=21036;AF_non_topmed_nfe=0.00860430;nhomalt_non_topmed_nfe=0;AC_amr=27;AN_amr=15242;AF_amr=0.00177142;nhomalt_amr=0;AC_non_neuro_ami=0;AN_non_neuro_ami=862;AF_non_neuro_ami=0.00000;nhomalt_non_neuro_ami=0;AC_non_cancer_nfe_XX=311;AN_non_cancer_nfe_XX=38040;AF_non_cancer_nfe_XX=0.00817560;nhomalt_non_cancer_nfe_XX=0;AC_non_cancer_mid=0;AN_non_cancer_mid=304;AF_non_cancer_mid=0.00000;nhomalt_non_cancer_mid=0;AC_non_v2_mid_XY=0;AN_non_v2_mid_XY=146;AF_non_v2_mid_XY=0.00000;nhomalt_non_v2_mid_XY=0;AC_controls_and_biobanks_amr_XY=7;AN_controls_and_biobanks_amr_XY=2206;AF_controls_and_biobanks_amr_XY=0.00317316;nhomalt_controls_and_biobanks_amr_XY=0;AC_non_cancer_ami_XY=0;AN_non_cancer_ami_XY=442;AF_non_cancer_ami_XY=0.00000;nhomalt_non_cancer_ami_XY=0;AC_non_neuro_asj_XX=22;AN_non_neuro_asj_XX=1830;AF_non_neuro_asj_XX=0.0120219;nhomalt_non_neuro_asj_XX=0;AC_afr=60;AN_afr=41434;AF_afr=0.00144809;nhomalt_afr=0;AC_non_v2_sas_XX=12;AN_non_v2_sas_XX=792;AF_non_v2_sas_XX=0.0151515;nhomalt_non_v2_sas_XX=0;AC_non_neuro_afr_XX=23;AN_non_neuro_afr_XX=18728;AF_non_neuro_afr_XX=0.00122811;nhomalt_non_neuro_afr_XX=0;AC_non_cancer_sas=59;AN_non_cancer_sas=4796;AF_non_cancer_sas=0.0123019;nhomalt_non_cancer_sas=0;AC_non_topmed_fin=70;AN_non_topmed_fin=10532;AF_non_topmed_fin=0.00664641;nhomalt_non_topmed_fin=1;AC_non_cancer_asj_XY=19;AN_non_cancer_asj_XY=1556;AF_non_cancer_asj_XY=0.0122108;nhomalt_non_cancer_asj_XY=0;AC_non_cancer_mid_XY=0;AN_non_cancer_mid_XY=144;AF_non_cancer_mid_XY=0.00000;nhomalt_non_cancer_mid_XY=0;AC_raw=829;AN_raw=152264;AF_raw=0.00544449;nhomalt_raw=2;AC_non_topmed_XX=153;AN_non_topmed_XX=32808;AF_non_topmed_XX=0.00466350;nhomalt_non_topmed_XX=1;AC_ami_XX=0;AN_ami_XX=470;AF_ami_XX=0.00000;nhomalt_ami_XX=0;AC_eas_XY=1;AN_eas_XY=2900;AF_eas_XY=0.000344828;nhomalt_eas_XY=0;AC_controls_and_biobanks_mid=0;AN_controls_and_biobanks_mid=246;AF_controls_and_biobanks_mid=0.00000;nhomalt_controls_and_biobanks_mid=0;AC_non_v2_nfe_XY=160;AN_non_v2_nfe_XY=20148;AF_non_v2_nfe_XY=0.00794123;nhomalt_non_v2_nfe_XY=1;AC_controls_and_biobanks_sas=30;AN_controls_and_biobanks_sas=3110;AF_controls_and_biobanks_sas=0.00964630;nhomalt_controls_and_biobanks_sas=0;AC_non_v2_eas=0;AN_non_v2_eas=2802;AF_non_v2_eas=0.00000;nhomalt_non_v2_eas=0;AC_mid=0;AN_mid=316;AF_mid=0.00000;nhomalt_mid=0;AC_oth_XY=3;AN_oth_XY=1060;AF_oth_XY=0.00283019;nhomalt_oth_XY=0;AC_non_cancer_nfe=523;AN_non_cancer_nfe=64740;AF_non_cancer_nfe=0.00807847;nhomalt_non_cancer_nfe=1;AC_non_neuro_eas_XX=0;AN_non_neuro_eas_XX=2268;AF_non_neuro_eas_XX=0.00000;nhomalt_non_neuro_eas_XX=0;AC_non_neuro_sas_XY=46;AN_non_neuro_sas_XY=3660;AF_non_neuro_sas_XY=0.0125683;nhomalt_non_neuro_sas_XY=0;AC_non_cancer_ami_XX=0;AN_non_cancer_ami_XX=470;AF_non_cancer_ami_XX=0.00000;nhomalt_non_cancer_ami_XX=0;AC_mid_XX=0;AN_mid_XX=164;AF_mid_XX=0.00000;nhomalt_mid_XX=0;AC_non_topmed_asj=17;AN_non_topmed_asj=996;AF_non_topmed_asj=0.0170683;nhomalt_non_topmed_asj=0;AC_non_v2_asj_XX=18;AN_non_v2_asj_XX=1688;AF_non_v2_asj_XX=0.0106635;nhomalt_non_v2_asj_XX=0;nhomalt=2;AC_non_v2_amr_XY=13;AN_non_v2_amr_XY=7684;AF_non_v2_amr_XY=0.00169183;nhomalt_non_v2_amr_XY=0;AC_non_cancer_amr_XX=12;AN_non_cancer_amr_XX=6728;AF_non_cancer_amr_XX=0.00178359;nhomalt_non_cancer_amr_XX=0;AC_controls_and_biobanks_afr_XX=1;AN_controls_and_biobanks_afr_XX=4712;AF_controls_and_biobanks_afr_XX=0.000212224;nhomalt_controls_and_biobanks_afr_XX=0;AC_asj=41;AN_asj=3468;AF_asj=0.0118224;nhomalt_asj=0;AC_non_topmed_asj_XY=10;AN_non_topmed_asj_XY=718;AF_non_topmed_asj_XY=0.0139276;nhomalt_non_topmed_asj_XY=0;AC_non_v2_fin_XX=5;AN_non_v2_fin_XX=1200;AF_non_v2_fin_XX=0.00416667;nhomalt_non_v2_fin_XX=1;AC_non_topmed_ami=0;AN_non_topmed_ami=112;AF_non_topmed_ami=0.00000;nhomalt_non_topmed_ami=0;AC_controls_and_biobanks_eas_XX=0;AN_controls_and_biobanks_eas_XX=1022;AF_controls_and_biobanks_eas_XX=0.00000;nhomalt_controls_and_biobanks_eas_XX=0;AC_controls_and_biobanks_fin_XX=3;AN_controls_and_biobanks_fin_XX=490;AF_controls_and_biobanks_fin_XX=0.00612245;nhomalt_controls_and_biobanks_fin_XX=0;AC_non_topmed_raw=403;AN_non_topmed_raw=80834;AF_non_topmed_raw=0.00498553;nhomalt_non_topmed_raw=1;AC_non_cancer_eas_XY=1;AN_non_cancer_eas_XY=2770;AF_non_cancer_eas_XY=0.000361011;nhomalt_non_cancer_eas_XY=0;AC_non_cancer=791;AN_non_cancer=147802;AF_non_cancer=0.00535175;nhomalt_non_cancer=2;AC_controls_and_biobanks_ami_XY=0;AN_controls_and_biobanks_ami_XY=30;AF_controls_and_biobanks_ami_XY=0.00000;nhomalt_controls_and_biobanks_ami_XY=0;AC_controls_and_biobanks_mid_XX=0;AN_controls_and_biobanks_mid_XX=134;AF_controls_and_biobanks_mid_XX=0.00000;nhomalt_controls_and_biobanks_mid_XX=0;AC_non_v2_afr_XY=22;AN_non_v2_afr_XY=12900;AF_non_v2_afr_XY=0.00170543;nhomalt_non_v2_afr_XY=0;AC_non_v2_sas_XY=39;AN_non_v2_sas_XY=3092;AF_non_v2_sas_XY=0.0126132;nhomalt_non_v2_sas_XY=0;AC_non_v2_fin=44;AN_non_v2_fin=7316;AF_non_v2_fin=0.00601422;nhomalt_non_v2_fin=1;AC_non_neuro_oth=11;AN_non_neuro_oth=2004;AF_non_neuro_oth=0.00548902;nhomalt_non_neuro_oth=0;AC_non_cancer_sas_XX=15;AN_non_cancer_sas_XX=1148;AF_non_cancer_sas_XX=0.0130662;nhomalt_non_cancer_sas_XX=0;AC_non_neuro_asj=41;AN_non_neuro_asj=3384;AF_non_neuro_asj=0.0121158;nhomalt_non_neuro_asj=0;AC_non_topmed_afr=39;AN_non_topmed_afr=24816;AF_non_topmed_afr=0.00157157;nhomalt_non_topmed_afr=0;AC_non_topmed_afr_XY=24;AN_non_topmed_afr_XY=12884;AF_non_topmed_afr_XY=0.00186278;nhomalt_non_topmed_afr_XY=0;AC_non_neuro_eas=1;AN_non_neuro_eas=5168;AF_non_neuro_eas=0.000193498;nhomalt_non_neuro_eas=0;AC_afr_XX=29;AN_afr_XX=22146;AF_afr_XX=0.00130949;nhomalt_afr_XX=0;AC_non_neuro_mid_XY=0;AN_non_neuro_mid_XY=146;AF_non_neuro_mid_XY=0.00000;nhomalt_non_neuro_mid_XY=0;AC_non_topmed_fin_XX=14;AN_non_topmed_fin_XX=2514;AF_non_topmed_fin_XX=0.00556881;nhomalt_non_topmed_fin_XX=1;AC_non_cancer_amr=27;AN_non_cancer_amr=15054;AF_non_cancer_amr=0.00179354;nhomalt_non_cancer_amr=0;AC_non_v2_ami_XX=0;AN_non_v2_ami_XX=470;AF_non_v2_ami_XX=0.00000;nhomalt_non_v2_ami_XX=0;AC_afr_XY=31;AN_afr_XY=19288;AF_afr_XY=0.00160722;nhomalt_afr_XY=0;AC_non_v2_mid_XX=0;AN_non_v2_mid_XX=162;AF_non_v2_mid_XX=0.00000;nhomalt_non_v2_mid_XX=0;AC_non_topmed_fin_XY=56;AN_non_topmed_fin_XY=8018;AF_non_topmed_fin_XY=0.00698429;nhomalt_non_topmed_fin_XY=0;AC_non_neuro_amr_XY=15;AN_non_neuro_amr_XY=8206;AF_non_neuro_amr_XY=0.00182793;nhomalt_non_neuro_amr_XY=0;AC_non_topmed_mid_XX=0;AN_non_topmed_mid_XX=142;AF_non_topmed_mid_XX=0.00000;nhomalt_non_topmed_mid_XX=0;AC_controls_and_biobanks_asj_XY=0;AN_controls_and_biobanks_asj_XY=52;AF_controls_and_biobanks_asj_XY=0.00000;nhomalt_controls_and_biobanks_asj_XY=0;AC_non_v2_fin_XY=39;AN_non_v2_fin_XY=6116;AF_non_v2_fin_XY=0.00637672;nhomalt_non_v2_fin_XY=0;AC_controls_and_biobanks_ami_XX=0;AN_controls_and_biobanks_ami_XX=30;AF_controls_and_biobanks_ami_XX=0.00000;nhomalt_controls_and_biobanks_ami_XX=0;AC_eas_XX=0;AN_eas_XX=2268;AF_eas_XX=0.00000;nhomalt_eas_XX=0;AC_non_cancer_amr_XY=15;AN_non_cancer_amr_XY=8326;AF_non_cancer_amr_XY=0.00180159;nhomalt_non_cancer_amr_XY=0;AC_non_neuro_ami_XX=0;AN_non_neuro_ami_XX=432;AF_non_neuro_ami_XX=0.00000;nhomalt_non_neuro_ami_XX=0;AC_controls_and_biobanks=142;AN_controls_and_biobanks=32870;AF_controls_and_biobanks=0.00432005;nhomalt_controls_and_biobanks=0;AC_controls_and_biobanks_oth=3;AN_controls_and_biobanks_oth=790;AF_controls_and_biobanks_oth=0.00379747;nhomalt_controls_and_biobanks_oth=0;AC_nfe_XY=230;AN_nfe_XY=28644;AF_nfe_XY=0.00802960;nhomalt_nfe_XY=1;AC_non_cancer_afr_XX=29;AN_non_cancer_afr_XX=21986;AF_non_cancer_afr_XX=0.00131902;nhomalt_non_cancer_afr_XX=0;AC_controls_and_biobanks_sas_XY=22;AN_controls_and_biobanks_sas_XY=2268;AF_controls_and_biobanks_sas_XY=0.00970018;nhomalt_controls_and_biobanks_sas_XY=0;AC_non_cancer_oth=12;AN_non_cancer_oth=2024;AF_non_cancer_oth=0.00592885;nhomalt_non_cancer_oth=0;AC_non_topmed_oth=8;AN_non_topmed_oth=1520;AF_non_topmed_oth=0.00526316;nhomalt_non_topmed_oth=0;AC_non_topmed_nfe_XY=94;AN_non_topmed_nfe_XY=11718;AF_non_topmed_nfe_XY=0.00802185;nhomalt_non_topmed_nfe_XY=0;AC_non_topmed_sas_XX=15;AN_non_topmed_sas_XX=1160;AF_non_topmed_sas_XX=0.0129310;nhomalt_non_topmed_sas_XX=0;AC_non_v2_nfe=426;AN_non_v2_nfe=51900;AF_non_v2_nfe=0.00820809;nhomalt_non_v2_nfe=1;AC_non_topmed_oth_XX=5;AN_non_topmed_oth_XX=690;AF_non_topmed_oth_XX=0.00724638;nhomalt_non_topmed_oth_XX=0;AC_non_cancer_mid_XX=0;AN_non_cancer_mid_XX=160;AF_non_cancer_mid_XX=0.00000;nhomalt_non_cancer_mid_XX=0;AC_controls_and_biobanks_nfe=41;AN_controls_and_biobanks_nfe=6846;AF_controls_and_biobanks_nfe=0.00598890;nhomalt_controls_and_biobanks_nfe=0;AC_controls_and_biobanks_oth_XY=2;AN_controls_and_biobanks_oth_XY=422;AF_controls_and_biobanks_oth_XY=0.00473934;nhomalt_controls_and_biobanks_oth_XY=0;AC_controls_and_biobanks_fin_XY=37;AN_controls_and_biobanks_fin_XY=5008;AF_controls_and_biobanks_fin_XY=0.00738818;nhomalt_controls_and_biobanks_fin_XY=0;AC_non_v2_amr_XX=11;AN_non_v2_amr_XX=6020;AF_non_v2_amr_XX=0.00182724;nhomalt_non_v2_amr_XX=0;AC_non_cancer_asj=38;AN_non_cancer_asj=3300;AF_non_cancer_asj=0.0115152;nhomalt_non_cancer_asj=0;AC_non_cancer_oth_XX=9;AN_non_cancer_oth_XX=1010;AF_non_cancer_oth_XX=0.00891089;nhomalt_non_cancer_oth_XX=0;AC_non_neuro_amr=27;AN_non_neuro_amr=14796;AF_non_neuro_amr=0.00182482;nhomalt_non_neuro_amr=0;AC_non_cancer_XX=410;AN_non_cancer_XX=76024;AF_non_cancer_XX=0.00539303;nhomalt_non_cancer_XX=1;AC_non_v2_ami_XY=0;AN_non_v2_ami_XY=440;AF_non_v2_ami_XY=0.00000;nhomalt_non_v2_ami_XY=0;AC_non_neuro_raw=748;AN_non_neuro_raw=134838;AF_non_neuro_raw=0.00554740;nhomalt_non_neuro_raw=1;AC_non_neuro_afr=43;AN_non_neuro_afr=32466;AF_non_neuro_afr=0.00132446;nhomalt_non_neuro_afr=0;AC_non_topmed_ami_XY=0;AN_non_topmed_ami_XY=44;AF_non_topmed_ami_XY=0.00000;nhomalt_non_topmed_ami_XY=0;AC_non_neuro_oth_XY=3;AN_non_neuro_oth_XY=1006;AF_non_neuro_oth_XY=0.00298211;nhomalt_non_neuro_oth_XY=0;AC_non_neuro_oth_XX=8;AN_non_neuro_oth_XX=998;AF_non_neuro_oth_XX=0.00801603;nhomalt_non_neuro_oth_XX=0;AC_controls_and_biobanks_XX=43;AN_controls_and_biobanks_XX=13410;AF_controls_and_biobanks_XX=0.00320656;nhomalt_controls_and_biobanks_XX=0;AC_non_cancer_afr_XY=31;AN_non_cancer_afr_XY=19126;AF_non_cancer_afr_XY=0.00162083;nhomalt_non_cancer_afr_XY=0;AC_non_cancer_fin=71;AN_non_cancer_fin=10624;AF_non_cancer_fin=0.00668298;nhomalt_non_cancer_fin=1;AC_controls_and_biobanks_asj=5;AN_controls_and_biobanks_asj=136;AF_controls_and_biobanks_asj=0.0367647;nhomalt_controls_and_biobanks_asj=0;AC_non_topmed_oth_XY=3;AN_non_topmed_oth_XY=830;AF_non_topmed_oth_XY=0.00361446;nhomalt_non_topmed_oth_XY=0;AC_non_neuro_mid_XX=0;AN_non_neuro_mid_XX=164;AF_non_neuro_mid_XX=0.00000;nhomalt_non_neuro_mid_XX=0;AC_controls_and_biobanks_oth_XX=1;AN_controls_and_biobanks_oth_XX=368;AF_controls_and_biobanks_oth_XX=0.00271739;nhomalt_controls_and_biobanks_oth_XX=0;AC_non_neuro_XY=357;AN_non_neuro_XY=64200;AF_non_neuro_XY=0.00556075;nhomalt_non_neuro_XY=1;AC_nfe=554;AN_nfe=67964;AF_nfe=0.00815137;nhomalt_nfe=1;AC_popmax=61;AN_popmax=4828;AF_popmax=0.0126346;nhomalt_popmax=0;faf95_sas=0.0100962;faf99_sas=0.00917760;faf95_eas=0.00000;faf99_eas=0.00000;faf95_amr=0.00124958;faf99_amr=0.00107504;faf95_afr=0.00115426;faf99_afr=0.00104841;faf95=0.00513109;faf99=0.00500806;faf95_nfe=0.00758931;faf99_nfe=0.00736691;age_hist_het_bin_freq=15|29|16|40|37|44|48|38|23|18;age_hist_het_n_smaller=33;age_hist_het_n_larger=7;age_hist_hom_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;FS=0.516395;MQ=59.9963;MQRankSum=0.0220000;QD=13.5251;ReadPosRankSum=0.334000;VarDP=57311;QUALapprox=775137;AS_FS=0.516395;AS_MQ=59.9963;AS_MQRankSum=0.0100000;AS_pab_max=1.00000;AS_QD=13.5251;AS_ReadPosRankSum=0.354000;AS_SOR=0.734062;InbreedingCoeff=-0.000622749;AS_SB_TABLE=13848,14918|13456,15089;AS_VQSLOD=7.50310;AS_culprit=AS_MQ;POSITIVE_TRAIN_SITE;allele_type=snv;n_alt_alleles=1;variant_type=snv;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|1|0|1|0|2|0|0|821;gq_hist_all_bin_freq=0|0|0|0|15274|14412|10726|7817|7939|5474|3737|3234|2006|1386|1034|698|503|319|177|1289;dp_hist_alt_bin_freq=0|0|4|39|79|151|191|152|122|50|18|9|7|2|1|0|0|0|0|0;dp_hist_alt_n_larger=0;dp_hist_all_bin_freq=0|0|273|2417|7511|12771|31246|18459|2277|472|267|146|74|44|31|17|6|3|6|3;dp_hist_all_n_smaller=0;dp_hist_all_n_larger=2;ab_hist_alt_bin_freq=0|0|0|0|2|9|28|75|141|165|167|123|64|38|7|4|0|0|0|0;cadd_raw_score=7.34813;cadd_phred=37.0000;revel_score=0.0560000;splice_ai_max_ds=0.0400000;splice_ai_consequence=acceptor_loss;vep=T|stop_gained|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000265379|protein_coding|39/43||ENST00000265379.10:c.6802G>T|ENSP00000265379.7:p.Glu2268Ter|7296|6802|2268|E/*|Gaa/Taa|1||1|SNV||HGNC|HGNC:26674|YES|5|P1||ENSP00000265379|||||||PANTHER:PTHR22588&PANTHER:PTHR22588||||||HC|||PERCENTILE:0.868044920877999,GERP_DIST:-2598.49994408861,BP_DIST:1840,DIST_FROM_LAST_EXON:1812,50_BP_RULE:PASS,ANN_ORF:1835.92,MAX_ORF:1835.92,T|stop_gained&NMD_transcript_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000312481|nonsense_mediated_decay|38/42||ENST00000312481.11:c.6814G>T|ENSP00000309762.7:p.Glu2272Ter|7308|6814|2272|E/*|Gaa/Taa|1||1|SNV||HGNC|HGNC:26674||1|||ENSP00000309762||||||||||||||||,T|stop_gained|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000373157|protein_coding|4/7||ENST00000373157.8:c.643G>T|ENSP00000362250.4:p.Glu215Ter|643|643|215|E/*|Gaa/Taa|1||1|SNV||HGNC|HGNC:26674||2|||ENSP00000362250|||||||PANTHER:PTHR22588&PANTHER:PTHR22588||||||HC|||PERCENTILE:0.384109916367981,GERP_DIST:-495.066058884561,BP_DIST:1028,DIST_FROM_LAST_EXON:1003,50_BP_RULE:PASS,ANN_ORF:1835.92,MAX_ORF:1835.92,T|stop_gained|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000512482|protein_coding|3/6||ENST00000512482.1:c.319G>T|ENSP00000424968.1:p.Glu107Ter|319|319|107|E/*|Gaa/Taa|1||1|SNV||HGNC|HGNC:26674||5|||ENSP00000424968|||||||PANTHER:PTHR22588&PANTHER:PTHR22588||||||HC|||PERCENTILE:0.239489489489489,GERP_DIST:-467.227558869123,BP_DIST:1010,DIST_FROM_LAST_EXON:1003,50_BP_RULE:PASS,ANN_ORF:1835.92,MAX_ORF:1835.92,T|stop_gained|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000512836|protein_coding|6/8||ENST00000512836.5:c.1570G>T|ENSP00000422898.1:p.Glu524Ter|1568|1570|524|E/*|Gaa/Taa|1||1|SNV||HGNC|HGNC:26674||2|||ENSP00000422898|||||||PANTHER:PTHR22588&PANTHER:PTHR22588||||||HC|||PERCENTILE:0.67237687366167,GERP_DIST:-183.17253190875,BP_DIST:765,DIST_FROM_LAST_EXON:759,50_BP_RULE:PASS,ANN_ORF:1835.92,MAX_ORF:1835.92,T|stop_gained|HIGH|COL6A5|256076|Transcript|NM_001278298.1|protein_coding|38/41||NM_001278298.1:c.6814G>T|NP_001265227.1:p.Glu2272Ter|7308|6814|2272|E/*|Gaa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||NP_001265227.1|||||||||||||HC|||PERCENTILE:0.868578712555768,GERP_DIST:-495.066058884561,BP_DIST:1028,DIST_FROM_LAST_EXON:1003,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|COL6A5|256076|Transcript|NM_153264.6|protein_coding|38/40||NM_153264.6:c.6814G>T|NP_694996.5:p.Glu2272Ter|7308|6814|2272|E/*|Gaa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||NP_694996.5|||||||||||||HC|||PERCENTILE:0.89882601239942,GERP_DIST:-183.17253190875,BP_DIST:765,DIST_FROM_LAST_EXON:759,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT,T|non_coding_transcript_exon_variant|MODIFIER|COL6A5|256076|Transcript|NR_022012.2|misc_RNA|38/42||NR_022012.2:n.7308G>T||7308|||||1||1|SNV||EntrezGene|HGNC:26674|YES||||||||||||||||||||,T|stop_gained|HIGH|COL6A5|256076|Transcript|XM_011512621.2|protein_coding|37/41||XM_011512621.2:c.6751G>T|XP_011510923.1:p.Glu2251Ter|7119|6751|2251|E/*|Gaa/Taa|1||1|SNV||EntrezGene|HGNC:26674|||||XP_011510923.1|||||||||||||HC|||PERCENTILE:0.867180475272961,GERP_DIST:-639.565788624436,BP_DIST:1117,DIST_FROM_LAST_EXON:1089,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT +chr3 130471876 rs11355796 AT A . PASS AC=93847;AN=151678;AF=0.618725;popmax=nfe;faf95_popmax=0.785695;AC_non_v2_XX=37906;AN_non_v2_XX=60056;AF_non_v2_XX=0.631178;nhomalt_non_v2_XX=13307;AC_non_cancer_fin_XX=1988;AN_non_cancer_fin_XX=2568;AF_non_cancer_fin_XX=0.774143;nhomalt_non_cancer_fin_XX=766;AC_non_neuro_nfe=50438;AN_non_neuro_nfe=63792;AF_non_neuro_nfe=0.790663;nhomalt_non_neuro_nfe=19973;AC_non_neuro_afr_XY=4026;AN_non_neuro_afr_XY=13696;AF_non_neuro_afr_XY=0.293954;nhomalt_non_neuro_afr_XY=581;AC_non_neuro_nfe_XY=20695;AN_non_neuro_nfe_XY=26202;AF_non_neuro_nfe_XY=0.789825;nhomalt_non_neuro_nfe_XY=8183;AC_controls_and_biobanks_eas_XY=618;AN_controls_and_biobanks_eas_XY=1370;AF_controls_and_biobanks_eas_XY=0.451095;nhomalt_controls_and_biobanks_eas_XY=151;AC_non_neuro_sas_XX=725;AN_non_neuro_sas_XX=1160;AF_non_neuro_sas_XX=0.625000;nhomalt_non_neuro_sas_XX=228;AC_non_v2=71936;AN_non_v2=114196;AF_non_v2=0.629934;nhomalt_non_v2=25132;AC_non_topmed_nfe_XX=7413;AN_non_topmed_nfe_XX=9300;AF_non_topmed_nfe_XX=0.797097;nhomalt_non_topmed_nfe_XX=2948;AC_non_v2_mid=217;AN_non_v2_mid=308;AF_non_v2_mid=0.704545;nhomalt_non_v2_mid=83;AC_non_topmed_sas=2905;AN_non_topmed_sas=4774;AF_non_topmed_sas=0.608504;nhomalt_non_topmed_sas=887;AC_non_cancer_eas_XX=890;AN_non_cancer_eas_XX=2154;AF_non_cancer_eas_XX=0.413185;nhomalt_non_cancer_eas_XX=182;AC_amr_XY=5523;AN_amr_XY=8442;AF_amr_XY=0.654229;nhomalt_amr_XY=1805;AC_non_v2_nfe_XX=25057;AN_non_v2_nfe_XX=31746;AF_non_v2_nfe_XX=0.789296;nhomalt_non_v2_nfe_XX=9916;AC_controls_and_biobanks_XY=11657;AN_controls_and_biobanks_XY=19336;AF_controls_and_biobanks_XY=0.602865;nhomalt_controls_and_biobanks_XY=3893;AC_non_neuro_asj_XY=1160;AN_non_neuro_asj_XY=1554;AF_non_neuro_asj_XY=0.746461;nhomalt_non_neuro_asj_XY=437;AC_oth=1323;AN_oth=2082;AF_oth=0.635447;nhomalt_oth=420;AC_non_topmed_mid_XY=86;AN_non_topmed_mid_XY=130;AF_non_topmed_mid_XY=0.661538;nhomalt_non_topmed_mid_XY=30;AC_non_cancer_asj_XX=1284;AN_non_cancer_asj_XX=1742;AF_non_cancer_asj_XX=0.737084;nhomalt_non_cancer_asj_XX=465;AC_sas_XY=2198;AN_sas_XY=3642;AF_sas_XY=0.603515;nhomalt_sas_XY=665;AC_non_neuro_fin=5448;AN_non_neuro_fin=6908;AF_non_neuro_fin=0.788651;nhomalt_non_neuro_fin=2137;AC_non_topmed_amr_XY=4942;AN_non_topmed_amr_XY=7542;AF_non_topmed_amr_XY=0.655264;nhomalt_non_topmed_amr_XY=1614;AC_non_neuro_XX=44047;AN_non_neuro_XX=70338;AF_non_neuro_XX=0.626219;nhomalt_non_neuro_XX=15419;AC_fin_XX=1988;AN_fin_XX=2568;AF_fin_XX=0.774143;nhomalt_fin_XX=766;AC_controls_and_biobanks_asj_XX=59;AN_controls_and_biobanks_asj_XX=84;AF_controls_and_biobanks_asj_XX=0.702381;nhomalt_controls_and_biobanks_asj_XX=20;AC_non_v2_raw=72220;AN_non_v2_raw=114638;AF_non_v2_raw=0.629983;nhomalt_non_v2_raw=25234;AC_non_v2_asj=2280;AN_non_v2_asj=3072;AF_non_v2_asj=0.742188;nhomalt_non_v2_asj=845;AC_nfe_XX=31110;AN_nfe_XX=39294;AF_nfe_XX=0.791724;nhomalt_nfe_XX=12333;AC_controls_and_biobanks_raw=18893;AN_controls_and_biobanks_raw=32906;AF_controls_and_biobanks_raw=0.574151;nhomalt_controls_and_biobanks_raw=6101;AC_controls_and_biobanks_ami=45;AN_controls_and_biobanks_ami=60;AF_controls_and_biobanks_ami=0.750000;nhomalt_controls_and_biobanks_ami=18;AC_non_topmed_eas=1571;AN_non_topmed_eas=3682;AF_non_topmed_eas=0.426670;nhomalt_non_topmed_eas=364;AC_non_v2_amr=8895;AN_non_v2_amr=13672;AF_non_v2_amr=0.650600;nhomalt_non_v2_amr=2885;AC_non_neuro_sas=2921;AN_non_neuro_sas=4800;AF_non_neuro_sas=0.608542;nhomalt_non_neuro_sas=892;AC_non_cancer_fin_XY=6232;AN_non_cancer_fin_XY=7976;AF_non_cancer_fin_XY=0.781344;nhomalt_non_cancer_fin_XY=2436;AC_non_cancer_nfe_XY=21114;AN_non_cancer_nfe_XY=26662;AF_non_cancer_nfe_XY=0.791914;nhomalt_non_cancer_nfe_XY=8372;AC_non_v2_oth=1168;AN_non_v2_oth=1854;AF_non_v2_oth=0.629989;nhomalt_non_v2_oth=363;AC_ami=690;AN_ami=910;AF_ami=0.758242;nhomalt_ami=267;AC_non_cancer_XY=43980;AN_non_cancer_XY=71530;AF_non_cancer_XY=0.614847;nhomalt_non_cancer_XY=15161;AC_non_v2_sas=2353;AN_non_v2_sas=3862;AF_non_v2_sas=0.609270;nhomalt_non_v2_sas=725;AC_non_topmed_afr_XX=3462;AN_non_topmed_afr_XX=11876;AF_non_topmed_afr_XX=0.291512;nhomalt_non_topmed_afr_XX=509;AC_sas=2923;AN_sas=4802;AF_sas=0.608705;nhomalt_sas=893;AC_non_neuro_nfe_XX=29743;AN_non_neuro_nfe_XX=37590;AF_non_neuro_nfe_XX=0.791248;nhomalt_non_neuro_nfe_XX=11790;AC_non_topmed_ami_XX=51;AN_non_topmed_ami_XX=66;AF_non_topmed_ami_XX=0.772727;nhomalt_non_topmed_ami_XX=20;AC_ami_XY=328;AN_ami_XY=442;AF_ami_XY=0.742081;nhomalt_ami_XY=126;AC_oth_XX=651;AN_oth_XX=1032;AF_oth_XX=0.630814;nhomalt_oth_XX=205;AC_non_cancer_eas=2061;AN_non_cancer_eas=4888;AF_non_cancer_eas=0.421645;nhomalt_non_cancer_eas=466;AC_non_topmed_XY=28469;AN_non_topmed_XY=47638;AF_non_topmed_XY=0.597611;nhomalt_non_topmed_XY=9587;AC_non_v2_ami=688;AN_non_v2_ami=908;AF_non_v2_ami=0.757709;nhomalt_non_v2_ami=266;AC_non_neuro=84710;AN_non_neuro=134304;AF_non_neuro=0.630733;nhomalt_non_neuro=29643;AC_amr_XX=4271;AN_amr_XX=6762;AF_amr_XX=0.631618;nhomalt_amr_XX=1346;AC_controls_and_biobanks_nfe_XY=2788;AN_controls_and_biobanks_nfe_XY=3586;AF_controls_and_biobanks_nfe_XY=0.777468;nhomalt_controls_and_biobanks_nfe_XY=1087;AC_controls_and_biobanks_eas=1055;AN_controls_and_biobanks_eas=2386;AF_controls_and_biobanks_eas=0.442163;nhomalt_controls_and_biobanks_eas=247;AC_XX=48085;AN_XX=77660;AF_XX=0.619173;nhomalt_XX=16750;AC_non_cancer_oth_XY=642;AN_non_cancer_oth_XY=1004;AF_non_cancer_oth_XY=0.639442;nhomalt_non_cancer_oth_XY=202;AC_non_v2_XY=34030;AN_non_v2_XY=54140;AF_non_v2_XY=0.628556;nhomalt_non_v2_XY=11825;AC_non_topmed_amr_XX=3322;AN_non_topmed_amr_XX=5296;AF_non_topmed_amr_XX=0.627266;nhomalt_non_topmed_amr_XX=1043;AC_fin=8220;AN_fin=10544;AF_fin=0.779590;nhomalt_fin=3202;AC_controls_and_biobanks_nfe_XX=2550;AN_controls_and_biobanks_nfe_XX=3246;AF_controls_and_biobanks_nfe_XX=0.785582;nhomalt_controls_and_biobanks_nfe_XX=1000;AC_controls_and_biobanks_afr=2601;AN_controls_and_biobanks_afr=9074;AF_controls_and_biobanks_afr=0.286643;nhomalt_controls_and_biobanks_afr=387;AC_asj_XX=1375;AN_asj_XX=1866;AF_asj_XX=0.736870;nhomalt_asj_XX=501;AC_non_topmed_mid=192;AN_non_topmed_mid=272;AF_non_topmed_mid=0.705882;nhomalt_non_topmed_mid=73;AC_non_cancer_sas_XY=2191;AN_non_cancer_sas_XY=3628;AF_non_cancer_sas_XY=0.603914;nhomalt_non_cancer_sas_XY=664;AC_sas_XX=725;AN_sas_XX=1160;AF_sas_XX=0.625000;nhomalt_sas_XX=228;AC_non_topmed=46702;AN_non_topmed=80336;AF_non_topmed=0.581333;nhomalt_non_topmed=15455;AC_non_v2_oth_XX=588;AN_non_v2_oth_XX=932;AF_non_v2_oth_XX=0.630901;nhomalt_non_v2_oth_XX=183;AC_non_neuro_ami_XY=320;AN_non_neuro_ami_XY=430;AF_non_neuro_ami_XY=0.744186;nhomalt_non_neuro_ami_XY=123;AC_controls_and_biobanks_afr_XY=1220;AN_controls_and_biobanks_afr_XY=4370;AF_controls_and_biobanks_afr_XY=0.279176;nhomalt_controls_and_biobanks_afr_XY=175;AC_controls_and_biobanks_amr_XX=1451;AN_controls_and_biobanks_amr_XX=2474;AF_controls_and_biobanks_amr_XX=0.586500;nhomalt_controls_and_biobanks_amr_XX=424;AC_non_topmed_amr=8264;AN_non_topmed_amr=12838;AF_non_topmed_amr=0.643714;nhomalt_non_topmed_amr=2657;AC_controls_and_biobanks_sas_XX=506;AN_controls_and_biobanks_sas_XX=838;AF_controls_and_biobanks_sas_XX=0.603819;nhomalt_controls_and_biobanks_sas_XX=154;AC_controls_and_biobanks_amr=2819;AN_controls_and_biobanks_amr=4676;AF_controls_and_biobanks_amr=0.602866;nhomalt_controls_and_biobanks_amr=840;AC_non_neuro_fin_XX=514;AN_non_neuro_fin_XX=656;AF_non_neuro_fin_XX=0.783537;nhomalt_non_neuro_fin_XX=195;AC_non_cancer_raw=91188;AN_non_cancer_raw=147990;AF_non_cancer_raw=0.616177;nhomalt_non_cancer_raw=31581;AC_non_neuro_mid=220;AN_non_neuro_mid=310;AF_non_neuro_mid=0.709677;nhomalt_non_neuro_mid=84;AC_non_v2_asj_XY=1034;AN_non_v2_asj_XY=1386;AF_non_v2_asj_XY=0.746032;nhomalt_non_v2_asj_XY=389;AC_non_v2_afr=8607;AN_non_v2_afr=28622;AF_non_v2_afr=0.300713;nhomalt_non_v2_afr=1306;AC_non_neuro_fin_XY=4934;AN_non_neuro_fin_XY=6252;AF_non_neuro_fin_XY=0.789187;nhomalt_non_neuro_fin_XY=1942;AC_non_cancer_afr=12109;AN_non_cancer_afr=41006;AF_non_cancer_afr=0.295298;nhomalt_non_cancer_afr=1814;AC_non_topmed_sas_XY=2184;AN_non_topmed_sas_XY=3620;AF_non_topmed_sas_XY=0.603315;nhomalt_non_topmed_sas_XY=660;AC_mid_XY=103;AN_mid_XY=152;AF_mid_XY=0.677632;nhomalt_mid_XY=37;AC_non_v2_oth_XY=580;AN_non_v2_oth_XY=922;AF_non_v2_oth_XY=0.629067;nhomalt_non_v2_oth_XY=180;AC_controls_and_biobanks_fin=4276;AN_controls_and_biobanks_fin=5428;AF_controls_and_biobanks_fin=0.787767;nhomalt_controls_and_biobanks_fin=1671;AC_non_neuro_eas_XY=1237;AN_non_neuro_eas_XY=2864;AF_non_neuro_eas_XY=0.431913;nhomalt_non_neuro_eas_XY=301;AC_non_topmed_eas_XX=587;AN_non_topmed_eas_XX=1386;AF_non_topmed_eas_XX=0.423521;nhomalt_non_topmed_eas_XX=126;AC_non_v2_afr_XX=4761;AN_non_v2_afr_XX=15768;AF_non_v2_afr_XX=0.301941;nhomalt_non_v2_afr_XX=729;AC_non_neuro_amr_XX=4145;AN_non_neuro_amr_XX=6572;AF_non_neuro_amr_XX=0.630706;nhomalt_non_neuro_amr_XX=1302;AC_non_cancer_ami=690;AN_non_cancer_ami=910;AF_non_cancer_ami=0.758242;nhomalt_non_cancer_ami=267;AC_XY=45762;AN_XY=74018;AF_XY=0.618255;nhomalt_XY=15826;AC_non_topmed_asj_XX=207;AN_non_topmed_asj_XX=280;AF_non_topmed_asj_XX=0.739286;nhomalt_non_topmed_asj_XX=79;AC_non_topmed_eas_XY=984;AN_non_topmed_eas_XY=2296;AF_non_topmed_eas_XY=0.428571;nhomalt_non_topmed_eas_XY=238;AC_non_v2_eas_XY=609;AN_non_v2_eas_XY=1470;AF_non_v2_eas_XY=0.414286;nhomalt_non_v2_eas_XY=141;AC_eas=2173;AN_eas=5122;AF_eas=0.424248;nhomalt_eas=493;AC_asj_XY=1195;AN_asj_XY=1602;AF_asj_XY=0.745943;nhomalt_asj_XY=449;AC_non_v2_eas_XX=510;AN_non_v2_eas_XX=1298;AF_non_v2_eas_XX=0.392912;nhomalt_non_v2_eas_XX=95;AC_controls_and_biobanks_mid_XY=75;AN_controls_and_biobanks_mid_XY=112;AF_controls_and_biobanks_mid_XY=0.669643;nhomalt_controls_and_biobanks_mid_XY=26;AC_fin_XY=6232;AN_fin_XY=7976;AF_fin_XY=0.781344;nhomalt_fin_XY=2436;AC_non_topmed_nfe=16670;AN_non_topmed_nfe=20984;AF_non_topmed_nfe=0.794415;nhomalt_non_topmed_nfe=6631;AC_amr=9794;AN_amr=15204;AF_amr=0.644173;nhomalt_amr=3151;AC_non_neuro_ami=654;AN_non_neuro_ami=862;AF_non_neuro_ami=0.758701;nhomalt_non_neuro_ami=253;AC_non_cancer_nfe_XX=30099;AN_non_cancer_nfe_XX=38006;AF_non_cancer_nfe_XX=0.791954;nhomalt_non_cancer_nfe_XX=11933;AC_non_cancer_mid=214;AN_non_cancer_mid=304;AF_non_cancer_mid=0.703947;nhomalt_non_cancer_mid=81;AC_non_v2_mid_XY=99;AN_non_v2_mid_XY=146;AF_non_v2_mid_XY=0.678082;nhomalt_non_v2_mid_XY=36;AC_controls_and_biobanks_amr_XY=1368;AN_controls_and_biobanks_amr_XY=2202;AF_controls_and_biobanks_amr_XY=0.621253;nhomalt_controls_and_biobanks_amr_XY=416;AC_non_cancer_ami_XY=328;AN_non_cancer_ami_XY=442;AF_non_cancer_ami_XY=0.742081;nhomalt_non_cancer_ami_XY=126;AC_non_neuro_asj_XX=1348;AN_non_neuro_asj_XX=1830;AF_non_neuro_asj_XX=0.736612;nhomalt_non_neuro_asj_XX=490;AC_afr=12200;AN_afr=41328;AF_afr=0.295199;nhomalt_afr=1827;AC_non_v2_sas_XX=494;AN_non_v2_sas_XX=790;AF_non_v2_sas_XX=0.625316;nhomalt_non_v2_sas_XX=155;AC_non_neuro_afr_XX=5557;AN_non_neuro_afr_XX=18680;AF_non_neuro_afr_XX=0.297484;nhomalt_non_neuro_afr_XX=850;AC_non_cancer_sas=2902;AN_non_cancer_sas=4770;AF_non_cancer_sas=0.608386;nhomalt_non_cancer_sas=887;AC_non_topmed_fin=8140;AN_non_topmed_fin=10452;AF_non_topmed_fin=0.778798;nhomalt_non_topmed_fin=3168;AC_non_cancer_asj_XY=1160;AN_non_cancer_asj_XY=1556;AF_non_cancer_asj_XY=0.745501;nhomalt_non_cancer_asj_XY=436;AC_non_cancer_mid_XY=98;AN_non_cancer_mid_XY=144;AF_non_cancer_mid_XY=0.680556;nhomalt_non_cancer_mid_XY=35;AC_raw=94224;AN_raw=152256;AF_raw=0.618852;nhomalt_raw=32714;AC_non_topmed_XX=18233;AN_non_topmed_XX=32698;AF_non_topmed_XX=0.557618;nhomalt_non_topmed_XX=5868;AC_ami_XX=362;AN_ami_XX=468;AF_ami_XX=0.773504;nhomalt_ami_XX=141;AC_eas_XY=1237;AN_eas_XY=2864;AF_eas_XY=0.431913;nhomalt_eas_XY=301;AC_controls_and_biobanks_mid=174;AN_controls_and_biobanks_mid=246;AF_controls_and_biobanks_mid=0.707317;nhomalt_controls_and_biobanks_mid=66;AC_non_v2_nfe_XY=15884;AN_non_v2_nfe_XY=20132;AF_non_v2_nfe_XY=0.788993;nhomalt_non_v2_nfe_XY=6277;AC_controls_and_biobanks_sas=1874;AN_controls_and_biobanks_sas=3096;AF_controls_and_biobanks_sas=0.605297;nhomalt_controls_and_biobanks_sas=563;AC_non_v2_eas=1119;AN_non_v2_eas=2768;AF_non_v2_eas=0.404263;nhomalt_non_v2_eas=236;AC_mid=223;AN_mid=316;AF_mid=0.705696;nhomalt_mid=85;AC_oth_XY=672;AN_oth_XY=1050;AF_oth_XY=0.640000;nhomalt_oth_XY=215;AC_non_cancer_nfe=51213;AN_non_cancer_nfe=64668;AF_non_cancer_nfe=0.791937;nhomalt_non_cancer_nfe=20305;AC_non_neuro_eas_XX=936;AN_non_neuro_eas_XX=2258;AF_non_neuro_eas_XX=0.414526;nhomalt_non_neuro_eas_XX=192;AC_non_neuro_sas_XY=2196;AN_non_neuro_sas_XY=3640;AF_non_neuro_sas_XY=0.603297;nhomalt_non_neuro_sas_XY=664;AC_non_cancer_ami_XX=362;AN_non_cancer_ami_XX=468;AF_non_cancer_ami_XX=0.773504;nhomalt_non_cancer_ami_XX=141;AC_mid_XX=120;AN_mid_XX=164;AF_mid_XX=0.731707;nhomalt_mid_XX=48;AC_non_topmed_asj=743;AN_non_topmed_asj=996;AF_non_topmed_asj=0.745984;nhomalt_non_topmed_asj=283;AC_non_v2_asj_XX=1246;AN_non_v2_asj_XX=1686;AF_non_v2_asj_XX=0.739027;nhomalt_non_v2_asj_XX=456;nhomalt=32576;AC_non_v2_amr_XY=5070;AN_non_v2_amr_XY=7666;AF_non_v2_amr_XY=0.661362;nhomalt_non_v2_amr_XY=1676;AC_non_cancer_amr_XX=4242;AN_non_cancer_amr_XX=6710;AF_non_cancer_amr_XX=0.632191;nhomalt_non_cancer_amr_XX=1340;AC_controls_and_biobanks_afr_XX=1381;AN_controls_and_biobanks_afr_XX=4704;AF_controls_and_biobanks_afr_XX=0.293580;nhomalt_controls_and_biobanks_afr_XX=212;AC_asj=2570;AN_asj=3468;AF_asj=0.741061;nhomalt_asj=950;AC_non_topmed_asj_XY=536;AN_non_topmed_asj_XY=716;AF_non_topmed_asj_XY=0.748603;nhomalt_non_topmed_asj_XY=204;AC_non_v2_fin_XX=945;AN_non_v2_fin_XX=1200;AF_non_v2_fin_XX=0.787500;nhomalt_non_v2_fin_XX=376;AC_non_topmed_ami=83;AN_non_topmed_ami=110;AF_non_topmed_ami=0.754545;nhomalt_non_topmed_ami=33;AC_controls_and_biobanks_eas_XX=437;AN_controls_and_biobanks_eas_XX=1016;AF_controls_and_biobanks_eas_XX=0.430118;nhomalt_controls_and_biobanks_eas_XX=96;AC_controls_and_biobanks_fin_XX=378;AN_controls_and_biobanks_fin_XX=488;AF_controls_and_biobanks_fin_XX=0.774590;nhomalt_controls_and_biobanks_fin_XX=139;AC_non_topmed_raw=47010;AN_non_topmed_raw=80818;AF_non_topmed_raw=0.581677;nhomalt_non_topmed_raw=15564;AC_non_cancer_eas_XY=1171;AN_non_cancer_eas_XY=2734;AF_non_cancer_eas_XY=0.428310;nhomalt_non_cancer_eas_XY=284;AC_non_cancer=90813;AN_non_cancer=147416;AF_non_cancer=0.616032;nhomalt_non_cancer=31444;AC_controls_and_biobanks_ami_XY=22;AN_controls_and_biobanks_ami_XY=30;AF_controls_and_biobanks_ami_XY=0.733333;nhomalt_controls_and_biobanks_ami_XY=9;AC_controls_and_biobanks_mid_XX=99;AN_controls_and_biobanks_mid_XX=134;AF_controls_and_biobanks_mid_XX=0.738806;nhomalt_controls_and_biobanks_mid_XX=40;AC_non_v2_afr_XY=3846;AN_non_v2_afr_XY=12854;AF_non_v2_afr_XY=0.299206;nhomalt_non_v2_afr_XY=577;AC_non_v2_sas_XY=1859;AN_non_v2_sas_XY=3072;AF_non_v2_sas_XY=0.605143;nhomalt_non_v2_sas_XY=570;AC_non_v2_fin=5668;AN_non_v2_fin=7252;AF_non_v2_fin=0.781577;nhomalt_non_v2_fin=2230;AC_non_neuro_oth=1260;AN_non_neuro_oth=1992;AF_non_neuro_oth=0.632530;nhomalt_non_neuro_oth=396;AC_non_cancer_sas_XX=711;AN_non_cancer_sas_XX=1142;AF_non_cancer_sas_XX=0.622592;nhomalt_non_cancer_sas_XX=223;AC_non_neuro_asj=2508;AN_non_neuro_asj=3384;AF_non_neuro_asj=0.741135;nhomalt_non_neuro_asj=927;AC_non_topmed_afr=7189;AN_non_topmed_afr=24720;AF_non_topmed_afr=0.290817;nhomalt_non_topmed_afr=1068;AC_non_topmed_afr_XY=3727;AN_non_topmed_afr_XY=12844;AF_non_topmed_afr_XY=0.290174;nhomalt_non_topmed_afr_XY=559;AC_non_neuro_eas=2173;AN_non_neuro_eas=5122;AF_non_neuro_eas=0.424248;nhomalt_non_neuro_eas=493;AC_afr_XX=6547;AN_afr_XX=22088;AF_afr_XX=0.296405;nhomalt_afr_XX=990;AC_non_neuro_mid_XY=100;AN_non_neuro_mid_XY=146;AF_non_neuro_mid_XY=0.684932;nhomalt_non_neuro_mid_XY=36;AC_non_topmed_fin_XX=1936;AN_non_topmed_fin_XX=2510;AF_non_topmed_fin_XX=0.771315;nhomalt_non_topmed_fin_XX=743;AC_non_cancer_amr=9682;AN_non_cancer_amr=15016;AF_non_cancer_amr=0.644779;nhomalt_non_cancer_amr=3119;AC_non_v2_ami_XX=362;AN_non_v2_ami_XX=468;AF_non_v2_ami_XX=0.773504;nhomalt_non_v2_ami_XX=141;AC_afr_XY=5653;AN_afr_XY=19240;AF_afr_XY=0.293815;nhomalt_afr_XY=837;AC_non_v2_mid_XX=118;AN_non_v2_mid_XX=162;AF_non_v2_mid_XX=0.728395;nhomalt_non_v2_mid_XX=47;AC_non_topmed_fin_XY=6204;AN_non_topmed_fin_XY=7942;AF_non_topmed_fin_XY=0.781163;nhomalt_non_topmed_fin_XY=2425;AC_non_neuro_amr_XY=5360;AN_non_neuro_amr_XY=8186;AF_non_neuro_amr_XY=0.654776;nhomalt_non_neuro_amr_XY=1755;AC_non_topmed_mid_XX=106;AN_non_topmed_mid_XX=142;AF_non_topmed_mid_XX=0.746479;nhomalt_non_topmed_mid_XX=43;AC_controls_and_biobanks_asj_XY=39;AN_controls_and_biobanks_asj_XY=52;AF_controls_and_biobanks_asj_XY=0.750000;nhomalt_controls_and_biobanks_asj_XY=15;AC_non_v2_fin_XY=4723;AN_non_v2_fin_XY=6052;AF_non_v2_fin_XY=0.780403;nhomalt_non_v2_fin_XY=1854;AC_controls_and_biobanks_ami_XX=23;AN_controls_and_biobanks_ami_XX=30;AF_controls_and_biobanks_ami_XX=0.766667;nhomalt_controls_and_biobanks_ami_XX=9;AC_eas_XX=936;AN_eas_XX=2258;AF_eas_XX=0.414526;nhomalt_eas_XX=192;AC_non_cancer_amr_XY=5440;AN_non_cancer_amr_XY=8306;AF_non_cancer_amr_XY=0.654948;nhomalt_non_cancer_amr_XY=1779;AC_non_neuro_ami_XX=334;AN_non_neuro_ami_XX=432;AF_non_neuro_ami_XX=0.773148;nhomalt_non_neuro_ami_XX=130;AC_controls_and_biobanks=18764;AN_controls_and_biobanks=32718;AF_controls_and_biobanks=0.573507;nhomalt_controls_and_biobanks=6052;AC_controls_and_biobanks_oth=484;AN_controls_and_biobanks_oth=784;AF_controls_and_biobanks_oth=0.617347;nhomalt_controls_and_biobanks_oth=138;AC_nfe_XY=22621;AN_nfe_XY=28608;AF_nfe_XY=0.790723;nhomalt_nfe_XY=8955;AC_non_cancer_afr_XX=6505;AN_non_cancer_afr_XX=21928;AF_non_cancer_afr_XX=0.296653;nhomalt_non_cancer_afr_XX=987;AC_controls_and_biobanks_sas_XY=1368;AN_controls_and_biobanks_sas_XY=2258;AF_controls_and_biobanks_sas_XY=0.605846;nhomalt_controls_and_biobanks_sas_XY=409;AC_non_cancer_oth=1278;AN_non_cancer_oth=2012;AF_non_cancer_oth=0.635189;nhomalt_non_cancer_oth=402;AC_non_topmed_oth=945;AN_non_topmed_oth=1508;AF_non_topmed_oth=0.626658;nhomalt_non_topmed_oth=291;AC_non_topmed_nfe_XY=9257;AN_non_topmed_nfe_XY=11684;AF_non_topmed_nfe_XY=0.792280;nhomalt_non_topmed_nfe_XY=3683;AC_non_topmed_sas_XX=721;AN_non_topmed_sas_XX=1154;AF_non_topmed_sas_XX=0.624783;nhomalt_non_topmed_sas_XX=227;AC_non_v2_nfe=40941;AN_non_v2_nfe=51878;AF_non_v2_nfe=0.789178;nhomalt_non_v2_nfe=16193;AC_non_topmed_oth_XX=428;AN_non_topmed_oth_XX=688;AF_non_topmed_oth_XX=0.622093;nhomalt_non_topmed_oth_XX=130;AC_non_cancer_mid_XX=116;AN_non_cancer_mid_XX=160;AF_non_cancer_mid_XX=0.725000;nhomalt_non_cancer_mid_XX=46;AC_controls_and_biobanks_nfe=5338;AN_controls_and_biobanks_nfe=6832;AF_controls_and_biobanks_nfe=0.781323;nhomalt_controls_and_biobanks_nfe=2087;AC_controls_and_biobanks_oth_XY=261;AN_controls_and_biobanks_oth_XY=416;AF_controls_and_biobanks_oth_XY=0.627404;nhomalt_controls_and_biobanks_oth_XY=73;AC_controls_and_biobanks_fin_XY=3898;AN_controls_and_biobanks_fin_XY=4940;AF_controls_and_biobanks_fin_XY=0.789069;nhomalt_controls_and_biobanks_fin_XY=1532;AC_non_v2_amr_XX=3825;AN_non_v2_amr_XX=6006;AF_non_v2_amr_XX=0.636863;nhomalt_non_v2_amr_XX=1209;AC_non_cancer_asj=2444;AN_non_cancer_asj=3298;AF_non_cancer_asj=0.741055;nhomalt_non_cancer_asj=901;AC_non_cancer_oth_XX=636;AN_non_cancer_oth_XX=1008;AF_non_cancer_oth_XX=0.630952;nhomalt_non_cancer_oth_XX=200;AC_non_neuro_amr=9505;AN_non_neuro_amr=14758;AF_non_neuro_amr=0.644057;nhomalt_non_neuro_amr=3057;AC_non_cancer_XX=46833;AN_non_cancer_XX=75886;AF_non_cancer_XX=0.617149;nhomalt_non_cancer_XX=16283;AC_non_v2_ami_XY=326;AN_non_v2_ami_XY=440;AF_non_v2_ami_XY=0.740909;nhomalt_non_v2_ami_XY=125;AC_non_neuro_raw=85055;AN_non_neuro_raw=134830;AF_non_neuro_raw=0.630831;nhomalt_non_neuro_raw=29770;AC_non_neuro_afr=9583;AN_non_neuro_afr=32376;AF_non_neuro_afr=0.295991;nhomalt_non_neuro_afr=1431;AC_non_topmed_ami_XY=32;AN_non_topmed_ami_XY=44;AF_non_topmed_ami_XY=0.727273;nhomalt_non_topmed_ami_XY=13;AC_non_neuro_oth_XY=635;AN_non_neuro_oth_XY=996;AF_non_neuro_oth_XY=0.637550;nhomalt_non_neuro_oth_XY=202;AC_non_neuro_oth_XX=625;AN_non_neuro_oth_XX=996;AF_non_neuro_oth_XX=0.627510;nhomalt_non_neuro_oth_XX=194;AC_controls_and_biobanks_XX=7107;AN_controls_and_biobanks_XX=13382;AF_controls_and_biobanks_XX=0.531087;nhomalt_controls_and_biobanks_XX=2159;AC_non_cancer_afr_XY=5604;AN_non_cancer_afr_XY=19078;AF_non_cancer_afr_XY=0.293741;nhomalt_non_cancer_afr_XY=827;AC_non_cancer_fin=8220;AN_non_cancer_fin=10544;AF_non_cancer_fin=0.779590;nhomalt_non_cancer_fin=3202;AC_controls_and_biobanks_asj=98;AN_controls_and_biobanks_asj=136;AF_controls_and_biobanks_asj=0.720588;nhomalt_controls_and_biobanks_asj=35;AC_non_topmed_oth_XY=517;AN_non_topmed_oth_XY=820;AF_non_topmed_oth_XY=0.630488;nhomalt_non_topmed_oth_XY=161;AC_non_neuro_mid_XX=120;AN_non_neuro_mid_XX=164;AF_non_neuro_mid_XX=0.731707;nhomalt_non_neuro_mid_XX=48;AC_controls_and_biobanks_oth_XX=223;AN_controls_and_biobanks_oth_XX=368;AF_controls_and_biobanks_oth_XX=0.605978;nhomalt_controls_and_biobanks_oth_XX=65;AC_non_neuro_XY=40663;AN_non_neuro_XY=63966;AF_non_neuro_XY=0.635697;nhomalt_non_neuro_XY=14224;AC_nfe=53731;AN_nfe=67902;AF_nfe=0.791302;nhomalt_nfe=21288;AC_popmax=53731;AN_popmax=67902;AF_popmax=0.791302;nhomalt_popmax=21288;faf95_sas=0.590304;faf99_sas=0.582819;faf95_eas=0.409389;faf99_eas=0.403363;faf95_amr=0.633504;faf99_amr=0.629126;faf95_afr=0.290817;faf99_afr=0.289017;faf95=0.615407;faf99=0.614036;faf95_nfe=0.785695;faf99_nfe=0.783382;age_hist_het_bin_freq=511|628|698|1229|1802|1398|1377|1165|826|517;age_hist_het_n_smaller=1372;age_hist_het_n_larger=166;age_hist_hom_bin_freq=601|638|815|1389|1945|1815|1540|1464|981|537;age_hist_hom_n_smaller=1237;age_hist_hom_n_larger=206;FS=4.82164e-16;MQ=59.9952;MQRankSum=-0.0180000;QD=25.8280;ReadPosRankSum=0.0570000;VarDP=4014680;QUALapprox=103691103;AS_FS=4.82164e-16;AS_MQ=59.9952;AS_MQRankSum=-0.0120000;AS_pab_max=1.00000;AS_QD=25.8281;AS_ReadPosRankSum=0.0710000;AS_SOR=0.689565;InbreedingCoeff=0.198179;AS_SB_TABLE=465925,472960|1529133,1546661;AS_VQSLOD=20.7718;AS_culprit=AS_FS;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;allele_type=del;n_alt_alleles=2;variant_type=mixed;was_mixed;gq_hist_alt_bin_freq=0|0|0|0|22|51|138|241|254|573|877|671|1546|1977|1165|2603|2939|1643|3103|43468;gq_hist_all_bin_freq=0|0|0|0|1401|1444|1431|1275|1495|1649|1904|1655|2555|2741|1862|3230|3456|2018|3452|44271;dp_hist_alt_bin_freq=0|0|1005|4158|9260|13481|13882|10263|5581|2346|807|289|106|43|17|13|6|8|3|1;dp_hist_alt_n_larger=2;dp_hist_all_bin_freq=0|0|1134|5233|11502|16318|17901|12937|6480|2720|992|364|146|52|22|15|7|9|3|1;dp_hist_all_n_smaller=0;dp_hist_all_n_larger=3;ab_hist_alt_bin_freq=0|0|0|0|110|454|1261|2399|4795|4638|6665|4054|2698|1072|370|133|32|14|0|0;cadd_raw_score=2.67149;cadd_phred=22.8000;splice_ai_max_ds=0.0200000;splice_ai_consequence=donor_loss;vep=-|frameshift_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000265379|protein_coding|41/43||ENST00000265379.10:c.7760del|ENSP00000265379.7:p.Leu2587Ter|8252|7758|2586|H/X|caT/ca|1||1|deletion||HGNC|HGNC:26674|YES|5|P1||ENSP00000265379|||||||PANTHER:PTHR22588&PANTHER:PTHR22588|2|||||HC||PHYLOCSF_WEAK|PERCENTILE:0.990301174068402,GERP_DIST:-2204.61918497682,BP_DIST:886,DIST_FROM_LAST_EXON:858,50_BP_RULE:PASS,ANN_ORF:-1214.45,MAX_ORF:-1214.45,-|frameshift_variant&NMD_transcript_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000312481|nonsense_mediated_decay|40/42||ENST00000312481.11:c.7772del|ENSP00000309762.7:p.Leu2591Ter|8264|7770|2590|H/X|caT/ca|1||1|deletion||HGNC|HGNC:26674||1|||ENSP00000309762||||||||2||||||||,-|frameshift_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000373157|protein_coding|6/7||ENST00000373157.8:c.1601del|ENSP00000362250.4:p.Leu534Ter|1599|1599|533|H/X|caT/ca|1||1|deletion||HGNC|HGNC:26674||2|||ENSP00000362250|||||||PANTHER:PTHR22588&PANTHER:PTHR22588|2|||||LC|END_TRUNC|PHYLOCSF_WEAK|PERCENTILE:0.956391875746714,GERP_DIST:-101.185299772769,BP_DIST:74,DIST_FROM_LAST_EXON:49,50_BP_RULE:FAIL,ANN_ORF:-1214.45,MAX_ORF:-1214.45,-|frameshift_variant|HIGH|COL6A5|ENSG00000172752|Transcript|ENST00000512482|protein_coding|5/6||ENST00000512482.1:c.1277del|ENSP00000424968.1:p.Leu426Ter|1275|1275|425|H/X|caT/ca|1||1|deletion||HGNC|HGNC:26674||5|||ENSP00000424968|||||||PANTHER:PTHR22588&PANTHER:PTHR22588|2|||||LC|END_TRUNC|PHYLOCSF_WEAK|PERCENTILE:0.958708708708709,GERP_DIST:-73.3467997573316,BP_DIST:56,DIST_FROM_LAST_EXON:49,50_BP_RULE:FAIL,ANN_ORF:-1214.45,MAX_ORF:-1214.45,-|intron_variant|MODIFIER|COL6A5|ENSG00000172752|Transcript|ENST00000512836|protein_coding||7/7|ENST00000512836.5:c.2328+912del|||||||1||1|deletion||HGNC|HGNC:26674||2|||ENSP00000422898||||||||||||||||,-|frameshift_variant|HIGH|COL6A5|256076|Transcript|NM_001278298.1|protein_coding|40/41||NM_001278298.1:c.7772del|NP_001265227.1:p.Leu2591Ter|8264|7770|2590|H/X|caT/ca|1||1|deletion||EntrezGene|HGNC:26674|||||NP_001265227.1||||||||2|||||LC|END_TRUNC||PERCENTILE:0.990694710006373,GERP_DIST:-101.185299772769,BP_DIST:74,DIST_FROM_LAST_EXON:49,50_BP_RULE:FAIL,PHYLOCSF_TOO_SHORT,-|intron_variant|MODIFIER|COL6A5|256076|Transcript|NM_153264.6|protein_coding||39/39|NM_153264.6:c.7574+912del|||||||1||1|deletion||EntrezGene|HGNC:26674|||||NP_694996.5||||||||||||||||,-|non_coding_transcript_exon_variant|MODIFIER|COL6A5|256076|Transcript|NR_022012.2|misc_RNA|40/42||NR_022012.2:n.8266del||8264|||||1||1|deletion||EntrezGene|HGNC:26674|YES||||||||||||||||||||,-|frameshift_variant|HIGH|COL6A5|256076|Transcript|XM_011512621.2|protein_coding|39/41||XM_011512621.2:c.7709del|XP_011510923.1:p.Leu2570Ter|8075|7707|2569|H/X|caT/ca|1||1|deletion||EntrezGene|HGNC:26674|||||XP_011510923.1||||||||2|||||HC|||PERCENTILE:0.990237636480411,GERP_DIST:-245.685029512644,BP_DIST:163,DIST_FROM_LAST_EXON:135,50_BP_RULE:PASS,PHYLOCSF_TOO_SHORT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gnomadv3_results/Nonessential_Host_Genes_Basic.txt Thu Jul 29 19:17:40 2021 +0000 @@ -0,0 +1,2 @@ +HGNC_Symbol Status +COL6A5 HC LoF found
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gnomadv3_results/Nonessential_Host_Genes_Detailed.txt Thu Jul 29 19:17:40 2021 +0000 @@ -0,0 +1,39 @@ +Chromosome Position_Start RSID Reference_Allele Alternate_Allele Score Quality LoF_Variant LoF_Annotation HGNC_Symbol Ensembl Code HGVSc african-AC african-AN african-AF ashkenazi-jewish-AC ashkenazi-jewish-AN ashkenazi-jewish-AF european-non-finnish-AC european-non-finnish-AN european-non-finnish-AF finnish-AC finnish-AN finnish-AF south-asian-AC south-asian-AN south-asian-AF latino-AC latino-AN latino-AF east-asian-AC east-asian-AN east-asian-AF other-AC other-AN other-AF XY-AC XY-AN XY-AF XX-AC XX-AN XX-AF +chr3 130395447 rs115380050 C T . PASS T stop_gained COL6A5 ENSG00000172752 ENST00000265379.10:c.3550C>T 753 41434 1.8173500000e-02 0 3470 0.0000000000e+00 3 68032 4.4096900000e-05 0 10606 0.0000000000e+00 2 4832 4.1390700000e-04 26 15270 1.7026900000e-03 0 5200 0.0000000000e+00 5 2090 2.3923400000e-03 354 74330 4.7625500000e-03 435 77830 5.5891000000e-03 +chr3 130395447 rs115380050 C T . PASS T stop_gained COL6A5 256076 NM_001278298.1:c.3550C>T 753 41434 1.8173500000e-02 0 3470 0.0000000000e+00 3 68032 4.4096900000e-05 0 10606 0.0000000000e+00 2 4832 4.1390700000e-04 26 15270 1.7026900000e-03 0 5200 0.0000000000e+00 5 2090 2.3923400000e-03 354 74330 4.7625500000e-03 435 77830 5.5891000000e-03 +chr3 130395447 rs115380050 C T . PASS T stop_gained COL6A5 256076 NM_153264.6:c.3550C>T 753 41434 1.8173500000e-02 0 3470 0.0000000000e+00 3 68032 4.4096900000e-05 0 10606 0.0000000000e+00 2 4832 4.1390700000e-04 26 15270 1.7026900000e-03 0 5200 0.0000000000e+00 5 2090 2.3923400000e-03 354 74330 4.7625500000e-03 435 77830 5.5891000000e-03 +chr3 130395447 rs115380050 C T . PASS T stop_gained COL6A5 256076 XM_011512621.2:c.3550C>T 753 41434 1.8173500000e-02 0 3470 0.0000000000e+00 3 68032 4.4096900000e-05 0 10606 0.0000000000e+00 2 4832 4.1390700000e-04 26 15270 1.7026900000e-03 0 5200 0.0000000000e+00 5 2090 2.3923400000e-03 354 74330 4.7625500000e-03 435 77830 5.5891000000e-03 +chr3 130395447 rs115380050 C T . PASS T stop_gained COL6A5 256076 XM_011512622.2:c.3550C>T 753 41434 1.8173500000e-02 0 3470 0.0000000000e+00 3 68032 4.4096900000e-05 0 10606 0.0000000000e+00 2 4832 4.1390700000e-04 26 15270 1.7026900000e-03 0 5200 0.0000000000e+00 5 2090 2.3923400000e-03 354 74330 4.7625500000e-03 435 77830 5.5891000000e-03 +chr3 130395447 rs115380050 C T . PASS T stop_gained COL6A5 256076 XM_011512623.2:c.3550C>T 753 41434 1.8173500000e-02 0 3470 0.0000000000e+00 3 68032 4.4096900000e-05 0 10606 0.0000000000e+00 2 4832 4.1390700000e-04 26 15270 1.7026900000e-03 0 5200 0.0000000000e+00 5 2090 2.3923400000e-03 354 74330 4.7625500000e-03 435 77830 5.5891000000e-03 +chr3 130405586 rs373650908 A G . PASS G splice_acceptor_variant COL6A5 ENSG00000172752 ENST00000265379.10:c.4282-2A>G 0 41374 0.0000000000e+00 0 3470 0.0000000000e+00 0 68012 0.0000000000e+00 0 10596 0.0000000000e+00 0 4814 0.0000000000e+00 0 15260 0.0000000000e+00 3 5170 5.8027100000e-04 0 2092 0.0000000000e+00 2 74238 2.6940400000e-05 1 77776 1.2857400000e-05 +chr3 130405586 rs373650908 A G . PASS G splice_acceptor_variant COL6A5 256076 NM_001278298.1:c.4282-2A>G 0 41374 0.0000000000e+00 0 3470 0.0000000000e+00 0 68012 0.0000000000e+00 0 10596 0.0000000000e+00 0 4814 0.0000000000e+00 0 15260 0.0000000000e+00 3 5170 5.8027100000e-04 0 2092 0.0000000000e+00 2 74238 2.6940400000e-05 1 77776 1.2857400000e-05 +chr3 130405586 rs373650908 A G . PASS G splice_acceptor_variant COL6A5 256076 NM_153264.6:c.4282-2A>G 0 41374 0.0000000000e+00 0 3470 0.0000000000e+00 0 68012 0.0000000000e+00 0 10596 0.0000000000e+00 0 4814 0.0000000000e+00 0 15260 0.0000000000e+00 3 5170 5.8027100000e-04 0 2092 0.0000000000e+00 2 74238 2.6940400000e-05 1 77776 1.2857400000e-05 +chr3 130405586 rs373650908 A G . PASS G splice_acceptor_variant COL6A5 256076 XM_011512621.2:c.4282-2A>G 0 41374 0.0000000000e+00 0 3470 0.0000000000e+00 0 68012 0.0000000000e+00 0 10596 0.0000000000e+00 0 4814 0.0000000000e+00 0 15260 0.0000000000e+00 3 5170 5.8027100000e-04 0 2092 0.0000000000e+00 2 74238 2.6940400000e-05 1 77776 1.2857400000e-05 +chr3 130405586 rs373650908 A G . PASS G splice_acceptor_variant COL6A5 256076 XM_011512622.2:c.4282-2A>G 0 41374 0.0000000000e+00 0 3470 0.0000000000e+00 0 68012 0.0000000000e+00 0 10596 0.0000000000e+00 0 4814 0.0000000000e+00 0 15260 0.0000000000e+00 3 5170 5.8027100000e-04 0 2092 0.0000000000e+00 2 74238 2.6940400000e-05 1 77776 1.2857400000e-05 +chr3 130405586 rs373650908 A G . PASS G splice_acceptor_variant COL6A5 256076 XM_011512623.2:c.4282-2A>G 0 41374 0.0000000000e+00 0 3470 0.0000000000e+00 0 68012 0.0000000000e+00 0 10596 0.0000000000e+00 0 4814 0.0000000000e+00 0 15260 0.0000000000e+00 3 5170 5.8027100000e-04 0 2092 0.0000000000e+00 2 74238 2.6940400000e-05 1 77776 1.2857400000e-05 +chr3 130413557 rs190283135 C T . PASS T stop_gained COL6A5 ENSG00000172752 ENST00000265379.10:c.4675C>T 15 41342 3.6282700000e-04 0 3458 0.0000000000e+00 129 67724 1.9047900000e-03 1 10554 9.4750800000e-05 0 4788 0.0000000000e+00 56 15212 3.6813000000e-03 0 5182 0.0000000000e+00 8 2078 3.8498600000e-03 87 74022 1.1753300000e-03 122 77540 1.5733800000e-03 +chr3 130413557 rs190283135 C T . PASS T stop_gained COL6A5 256076 NM_001278298.1:c.4675C>T 15 41342 3.6282700000e-04 0 3458 0.0000000000e+00 129 67724 1.9047900000e-03 1 10554 9.4750800000e-05 0 4788 0.0000000000e+00 56 15212 3.6813000000e-03 0 5182 0.0000000000e+00 8 2078 3.8498600000e-03 87 74022 1.1753300000e-03 122 77540 1.5733800000e-03 +chr3 130413557 rs190283135 C T . PASS T stop_gained COL6A5 256076 NM_153264.6:c.4675C>T 15 41342 3.6282700000e-04 0 3458 0.0000000000e+00 129 67724 1.9047900000e-03 1 10554 9.4750800000e-05 0 4788 0.0000000000e+00 56 15212 3.6813000000e-03 0 5182 0.0000000000e+00 8 2078 3.8498600000e-03 87 74022 1.1753300000e-03 122 77540 1.5733800000e-03 +chr3 130413557 rs190283135 C T . PASS T stop_gained COL6A5 256076 XM_011512621.2:c.4675C>T 15 41342 3.6282700000e-04 0 3458 0.0000000000e+00 129 67724 1.9047900000e-03 1 10554 9.4750800000e-05 0 4788 0.0000000000e+00 56 15212 3.6813000000e-03 0 5182 0.0000000000e+00 8 2078 3.8498600000e-03 87 74022 1.1753300000e-03 122 77540 1.5733800000e-03 +chr3 130413557 rs190283135 C T . PASS T stop_gained COL6A5 256076 XM_011512622.2:c.4675C>T 15 41342 3.6282700000e-04 0 3458 0.0000000000e+00 129 67724 1.9047900000e-03 1 10554 9.4750800000e-05 0 4788 0.0000000000e+00 56 15212 3.6813000000e-03 0 5182 0.0000000000e+00 8 2078 3.8498600000e-03 87 74022 1.1753300000e-03 122 77540 1.5733800000e-03 +chr3 130413557 rs190283135 C T . PASS T stop_gained COL6A5 256076 XM_011512623.2:c.4675C>T 15 41342 3.6282700000e-04 0 3458 0.0000000000e+00 129 67724 1.9047900000e-03 1 10554 9.4750800000e-05 0 4788 0.0000000000e+00 56 15212 3.6813000000e-03 0 5182 0.0000000000e+00 8 2078 3.8498600000e-03 87 74022 1.1753300000e-03 122 77540 1.5733800000e-03 +chr3 130421152 rs139339125 G T . PASS T splice_acceptor_variant COL6A5 ENSG00000172752 ENST00000265379.10:c.4951-1G>T 2 41426 4.8278900000e-05 41 3470 1.1815600000e-02 39 67986 5.7364800000e-04 273 10600 2.5754700000e-02 1 4826 2.0721100000e-04 0 15242 0.0000000000e+00 10 5166 1.9357300000e-03 4 2094 1.9102200000e-03 245 74236 3.3002900000e-03 125 77802 1.6066400000e-03 +chr3 130421152 rs139339125 G T . PASS T splice_acceptor_variant COL6A5 256076 NM_001278298.1:c.4951-1G>T 2 41426 4.8278900000e-05 41 3470 1.1815600000e-02 39 67986 5.7364800000e-04 273 10600 2.5754700000e-02 1 4826 2.0721100000e-04 0 15242 0.0000000000e+00 10 5166 1.9357300000e-03 4 2094 1.9102200000e-03 245 74236 3.3002900000e-03 125 77802 1.6066400000e-03 +chr3 130421152 rs139339125 G T . PASS T splice_acceptor_variant COL6A5 256076 NM_153264.6:c.4951-1G>T 2 41426 4.8278900000e-05 41 3470 1.1815600000e-02 39 67986 5.7364800000e-04 273 10600 2.5754700000e-02 1 4826 2.0721100000e-04 0 15242 0.0000000000e+00 10 5166 1.9357300000e-03 4 2094 1.9102200000e-03 245 74236 3.3002900000e-03 125 77802 1.6066400000e-03 +chr3 130421152 rs139339125 G T . PASS T splice_acceptor_variant COL6A5 256076 XM_011512621.2:c.4888-1G>T 2 41426 4.8278900000e-05 41 3470 1.1815600000e-02 39 67986 5.7364800000e-04 273 10600 2.5754700000e-02 1 4826 2.0721100000e-04 0 15242 0.0000000000e+00 10 5166 1.9357300000e-03 4 2094 1.9102200000e-03 245 74236 3.3002900000e-03 125 77802 1.6066400000e-03 +chr3 130421152 rs139339125 G T . PASS T splice_acceptor_variant COL6A5 256076 XM_011512622.2:c.4951-1G>T 2 41426 4.8278900000e-05 41 3470 1.1815600000e-02 39 67986 5.7364800000e-04 273 10600 2.5754700000e-02 1 4826 2.0721100000e-04 0 15242 0.0000000000e+00 10 5166 1.9357300000e-03 4 2094 1.9102200000e-03 245 74236 3.3002900000e-03 125 77802 1.6066400000e-03 +chr3 130421152 rs139339125 G T . PASS T splice_acceptor_variant COL6A5 256076 XM_011512623.2:c.4951-1G>T 2 41426 4.8278900000e-05 41 3470 1.1815600000e-02 39 67986 5.7364800000e-04 273 10600 2.5754700000e-02 1 4826 2.0721100000e-04 0 15242 0.0000000000e+00 10 5166 1.9357300000e-03 4 2094 1.9102200000e-03 245 74236 3.3002900000e-03 125 77802 1.6066400000e-03 +chr3 130440486 rs2201717 C T . PASS T stop_gained COL6A5 ENSG00000172752 ENST00000265379.10:c.6136C>T 118 41434 2.8479000000e-03 0 3470 0.0000000000e+00 565 68014 8.3071100000e-03 224 10612 2.1108200000e-02 22 4834 4.5511000000e-03 952 15266 6.2360800000e-02 1 5190 1.9267800000e-04 26 2090 1.2440200000e-02 1011 74316 1.3604100000e-02 897 77822 1.1526300000e-02 +chr3 130440486 rs2201717 C T . PASS T stop_gained COL6A5 ENSG00000172752 ENST00000512836.5:c.904C>T 118 41434 2.8479000000e-03 0 3470 0.0000000000e+00 565 68014 8.3071100000e-03 224 10612 2.1108200000e-02 22 4834 4.5511000000e-03 952 15266 6.2360800000e-02 1 5190 1.9267800000e-04 26 2090 1.2440200000e-02 1011 74316 1.3604100000e-02 897 77822 1.1526300000e-02 +chr3 130440486 rs2201717 C T . PASS T stop_gained COL6A5 256076 NM_001278298.1:c.6148C>T 118 41434 2.8479000000e-03 0 3470 0.0000000000e+00 565 68014 8.3071100000e-03 224 10612 2.1108200000e-02 22 4834 4.5511000000e-03 952 15266 6.2360800000e-02 1 5190 1.9267800000e-04 26 2090 1.2440200000e-02 1011 74316 1.3604100000e-02 897 77822 1.1526300000e-02 +chr3 130440486 rs2201717 C T . PASS T stop_gained COL6A5 256076 NM_153264.6:c.6148C>T 118 41434 2.8479000000e-03 0 3470 0.0000000000e+00 565 68014 8.3071100000e-03 224 10612 2.1108200000e-02 22 4834 4.5511000000e-03 952 15266 6.2360800000e-02 1 5190 1.9267800000e-04 26 2090 1.2440200000e-02 1011 74316 1.3604100000e-02 897 77822 1.1526300000e-02 +chr3 130440486 rs2201717 C T . PASS T stop_gained COL6A5 256076 XM_011512621.2:c.6085C>T 118 41434 2.8479000000e-03 0 3470 0.0000000000e+00 565 68014 8.3071100000e-03 224 10612 2.1108200000e-02 22 4834 4.5511000000e-03 952 15266 6.2360800000e-02 1 5190 1.9267800000e-04 26 2090 1.2440200000e-02 1011 74316 1.3604100000e-02 897 77822 1.1526300000e-02 +chr3 130468818 rs115375867 G T . PASS T stop_gained COL6A5 ENSG00000172752 ENST00000265379.10:c.6802G>T 60 41434 1.4480900000e-03 41 3468 1.1822400000e-02 554 67964 8.1513700000e-03 71 10624 6.6829800000e-03 61 4828 1.2634600000e-02 27 15242 1.7714200000e-03 1 5168 1.9349800000e-04 12 2094 5.7306600000e-03 401 74264 5.3996600000e-03 426 77786 5.4765600000e-03 +chr3 130468818 rs115375867 G T . PASS T stop_gained COL6A5 ENSG00000172752 ENST00000373157.8:c.643G>T 60 41434 1.4480900000e-03 41 3468 1.1822400000e-02 554 67964 8.1513700000e-03 71 10624 6.6829800000e-03 61 4828 1.2634600000e-02 27 15242 1.7714200000e-03 1 5168 1.9349800000e-04 12 2094 5.7306600000e-03 401 74264 5.3996600000e-03 426 77786 5.4765600000e-03 +chr3 130468818 rs115375867 G T . PASS T stop_gained COL6A5 ENSG00000172752 ENST00000512482.1:c.319G>T 60 41434 1.4480900000e-03 41 3468 1.1822400000e-02 554 67964 8.1513700000e-03 71 10624 6.6829800000e-03 61 4828 1.2634600000e-02 27 15242 1.7714200000e-03 1 5168 1.9349800000e-04 12 2094 5.7306600000e-03 401 74264 5.3996600000e-03 426 77786 5.4765600000e-03 +chr3 130468818 rs115375867 G T . PASS T stop_gained COL6A5 ENSG00000172752 ENST00000512836.5:c.1570G>T 60 41434 1.4480900000e-03 41 3468 1.1822400000e-02 554 67964 8.1513700000e-03 71 10624 6.6829800000e-03 61 4828 1.2634600000e-02 27 15242 1.7714200000e-03 1 5168 1.9349800000e-04 12 2094 5.7306600000e-03 401 74264 5.3996600000e-03 426 77786 5.4765600000e-03 +chr3 130468818 rs115375867 G T . PASS T stop_gained COL6A5 256076 NM_001278298.1:c.6814G>T 60 41434 1.4480900000e-03 41 3468 1.1822400000e-02 554 67964 8.1513700000e-03 71 10624 6.6829800000e-03 61 4828 1.2634600000e-02 27 15242 1.7714200000e-03 1 5168 1.9349800000e-04 12 2094 5.7306600000e-03 401 74264 5.3996600000e-03 426 77786 5.4765600000e-03 +chr3 130468818 rs115375867 G T . PASS T stop_gained COL6A5 256076 NM_153264.6:c.6814G>T 60 41434 1.4480900000e-03 41 3468 1.1822400000e-02 554 67964 8.1513700000e-03 71 10624 6.6829800000e-03 61 4828 1.2634600000e-02 27 15242 1.7714200000e-03 1 5168 1.9349800000e-04 12 2094 5.7306600000e-03 401 74264 5.3996600000e-03 426 77786 5.4765600000e-03 +chr3 130468818 rs115375867 G T . PASS T stop_gained COL6A5 256076 XM_011512621.2:c.6751G>T 60 41434 1.4480900000e-03 41 3468 1.1822400000e-02 554 67964 8.1513700000e-03 71 10624 6.6829800000e-03 61 4828 1.2634600000e-02 27 15242 1.7714200000e-03 1 5168 1.9349800000e-04 12 2094 5.7306600000e-03 401 74264 5.3996600000e-03 426 77786 5.4765600000e-03 +chr3 130471876 rs11355796 AT A . PASS - frameshift_variant COL6A5 ENSG00000172752 ENST00000265379.10:c.7760del 12200 41328 2.9519900000e-01 2570 3468 7.4106100000e-01 53731 67902 7.9130200000e-01 8220 10544 7.7959000000e-01 2923 4802 6.0870500000e-01 9794 15204 6.4417300000e-01 2173 5122 4.2424800000e-01 1323 2082 6.3544700000e-01 45762 74018 6.1825500000e-01 48085 77660 6.1917300000e-01 +chr3 130471876 rs11355796 AT A . PASS - frameshift_variant COL6A5 256076 XM_011512621.2:c.7709del 12200 41328 2.9519900000e-01 2570 3468 7.4106100000e-01 53731 67902 7.9130200000e-01 8220 10544 7.7959000000e-01 2923 4802 6.0870500000e-01 9794 15204 6.4417300000e-01 2173 5122 4.2424800000e-01 1323 2082 6.3544700000e-01 45762 74018 6.1825500000e-01 48085 77660 6.1917300000e-01
--- a/test-data/results/Nonessential_Gene_Variants.vcf Fri Jun 11 21:08:17 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,603 +0,0 @@ -##fileformat=VCFv4.2 -##hailversion=0.2.7-c860755b5da3 -##FILTER=<ID=AC0,Description="Allele count is zero after filtering out low-confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls)"> -##FILTER=<ID=InbreedingCoeff,Description="InbreedingCoeff < -0.3"> -##FILTER=<ID=PASS,Description="Passed all variant filters"> -##FILTER=<ID=RF,Description="Failed random forest filtering thresholds of 0.2634762834546574, 0.22213813189901457 (probabilities of being a true positive variant) for SNPs, indels"> -##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate allele count for samples"> -##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in samples"> -##INFO=<ID=AF,Number=A,Type=Float,Description="Alternate allele frequency in samples"> -##INFO=<ID=rf_tp_probability,Number=1,Type=Float,Description="Random forest prediction probability for a site being a true variant"> -##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value of Fisher's exact test for strand bias"> -##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation"> -##INFO=<ID=MQ,Number=1,Type=Float,Description="Root mean square of the mapping quality of reads across all samples"> -##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference read mapping qualities"> -##INFO=<ID=QD,Number=1,Type=Float,Description="Variant call confidence normalized by depth of sample reads supporting a variant"> -##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference read position bias"> -##INFO=<ID=SOR,Number=1,Type=Float,Description="Strand bias estimated by the symmetric odds ratio test"> -##INFO=<ID=VQSR_POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="Variant was used to build the positive training set of high-quality variants for VQSR"> -##INFO=<ID=VQSR_NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="Variant was used to build the negative training set of low-quality variants for VQSR"> -##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference base qualities"> -##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of alternate vs. reference number of hard clipped bases"> -##INFO=<ID=DP,Number=1,Type=Integer,Description="Depth of informative coverage for each sample; reads with MQ=255 or with bad mates are filtered"> -##INFO=<ID=VQSLOD,Number=1,Type=Float,Description="Log-odds ratio of being a true variant versus being a false positive under the trained VQSR Gaussian mixture model"> -##INFO=<ID=VQSR_culprit,Number=1,Type=String,Description="Worst-performing annotation in the VQSR Gaussian mixture model"> -##INFO=<ID=segdup,Number=0,Type=Flag,Description="Variant falls within a segmental duplication region"> -##INFO=<ID=lcr,Number=0,Type=Flag,Description="Variant falls within a low complexity region"> -##INFO=<ID=decoy,Number=0,Type=Flag,Description="Variant falls within a reference decoy region"> -##INFO=<ID=nonpar,Number=0,Type=Flag,Description="Variant (on sex chromosome) falls outside a pseudoautosomal region"> -##INFO=<ID=rf_positive_label,Number=0,Type=Flag,Description="Variant was labelled as a positive example for training of random forest model"> -##INFO=<ID=rf_negative_label,Number=0,Type=Flag,Description="Variant was labelled as a negative example for training of random forest model"> -##INFO=<ID=rf_label,Number=1,Type=String,Description="Random forest training label"> -##INFO=<ID=rf_train,Number=0,Type=Flag,Description="Variant was used in training random forest model"> -##INFO=<ID=transmitted_singleton,Number=0,Type=Flag,Description="Variant was a callset-wide doubleton that was transmitted within a family (i.e., a singleton amongst unrelated sampes in cohort)"> -##INFO=<ID=variant_type,Number=1,Type=String,Description="Variant type (snv, indel, multi-snv, multi-indel, or mixed)"> -##INFO=<ID=allele_type,Number=A,Type=String,Description="Allele type (snv, ins, del, or mixed)"> -##INFO=<ID=n_alt_alleles,Number=A,Type=Integer,Description="Total number of alternate alleles observed at variant locus"> -##INFO=<ID=was_mixed,Number=0,Type=Flag,Description="Variant type was mixed"> -##INFO=<ID=has_star,Number=0,Type=Flag,Description="Variant locus coincides with a spanning deletion (represented by a star) observed elsewhere in the callset"> -##INFO=<ID=pab_max,Number=A,Type=Float,Description="Maximum p-value over callset for binomial test of observed allele balance for a heterozygous genotype, given expectation of AB=0.5"> -##INFO=<ID=gq_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for GQ in heterozygous individuals; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> -##INFO=<ID=gq_hist_all_bin_freq,Number=A,Type=String,Description="Histogram for GQ; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> -##INFO=<ID=dp_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for DP in heterozygous individuals; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> -##INFO=<ID=dp_hist_alt_n_larger,Number=A,Type=Integer,Description="Count of DP values falling above highest histogram bin edge"> -##INFO=<ID=dp_hist_all_bin_freq,Number=A,Type=String,Description="Histogram for DP; bin edges are: 0|5|10|15|20|25|30|35|40|45|50|55|60|65|70|75|80|85|90|95|100"> -##INFO=<ID=dp_hist_all_n_larger,Number=A,Type=Integer,Description="Count of DP values falling above highest histogram bin edge"> -##INFO=<ID=ab_hist_alt_bin_freq,Number=A,Type=String,Description="Histogram for AB in heterozygous individuals; bin edges are: 0.00|0.05|0.10|0.15|0.20|0.25|0.30|0.35|0.40|0.45|0.50|0.55|0.60|0.65|0.70|0.75|0.80|0.85|0.90|0.95|1.00"> -##INFO=<ID=AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry"> -##INFO=<ID=AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry"> -##INFO=<ID=AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry"> -##INFO=<ID=nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry"> -##INFO=<ID=controls_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=non_topmed_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples, before removing low-confidence genotypes"> -##INFO=<ID=AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples, before removing low-confidence genotypes"> -##INFO=<ID=AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples, before removing low-confidence genotypes"> -##INFO=<ID=nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples, before removing low-confidence genotypes"> -##INFO=<ID=AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry"> -##INFO=<ID=AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry"> -##INFO=<ID=AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry"> -##INFO=<ID=nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry"> -##INFO=<ID=non_neuro_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry"> -##INFO=<ID=AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry"> -##INFO=<ID=AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry"> -##INFO=<ID=nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry"> -##INFO=<ID=AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry"> -##INFO=<ID=AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry"> -##INFO=<ID=AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry"> -##INFO=<ID=nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry"> -##INFO=<ID=non_neuro_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry"> -##INFO=<ID=AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry"> -##INFO=<ID=AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry"> -##INFO=<ID=nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry"> -##INFO=<ID=AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry"> -##INFO=<ID=AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry"> -##INFO=<ID=AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry"> -##INFO=<ID=nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry"> -##INFO=<ID=non_neuro_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the non_neuro subset"> -##INFO=<ID=controls_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry"> -##INFO=<ID=AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry"> -##INFO=<ID=AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry"> -##INFO=<ID=nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry"> -##INFO=<ID=controls_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the non_neuro subset"> -##INFO=<ID=AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry"> -##INFO=<ID=AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry"> -##INFO=<ID=AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry"> -##INFO=<ID=nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry"> -##INFO=<ID=AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry"> -##INFO=<ID=AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry"> -##INFO=<ID=AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry"> -##INFO=<ID=nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry"> -##INFO=<ID=AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry"> -##INFO=<ID=AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry"> -##INFO=<ID=AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry"> -##INFO=<ID=nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry"> -##INFO=<ID=non_topmed_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry"> -##INFO=<ID=AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry"> -##INFO=<ID=AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry"> -##INFO=<ID=nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry"> -##INFO=<ID=nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples"> -##INFO=<ID=non_neuro_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=controls_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the controls subset, before removing low-confidence genotypes"> -##INFO=<ID=controls_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the controls subset, before removing low-confidence genotypes"> -##INFO=<ID=controls_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the controls subset, before removing low-confidence genotypes"> -##INFO=<ID=controls_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the controls subset, before removing low-confidence genotypes"> -##INFO=<ID=controls_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the controls subset"> -##INFO=<ID=controls_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the controls subset"> -##INFO=<ID=controls_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the controls subset"> -##INFO=<ID=controls_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the controls subset"> -##INFO=<ID=non_topmed_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the non_topmed subset"> -##INFO=<ID=controls_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=controls_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry"> -##INFO=<ID=AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry"> -##INFO=<ID=AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry"> -##INFO=<ID=nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry"> -##INFO=<ID=controls_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=controls_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the controls subset"> -##INFO=<ID=controls_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the controls subset"> -##INFO=<ID=controls_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the controls subset"> -##INFO=<ID=AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry"> -##INFO=<ID=AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry"> -##INFO=<ID=AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry"> -##INFO=<ID=nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry"> -##INFO=<ID=controls_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the controls subset"> -##INFO=<ID=controls_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the controls subset"> -##INFO=<ID=controls_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=controls_AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples"> -##INFO=<ID=AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples"> -##INFO=<ID=AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples"> -##INFO=<ID=nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples"> -##INFO=<ID=non_neuro_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_nfe_nwe,Number=A,Type=Integer,Description="Alternate allele count for samples of North-Western European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_nfe_nwe,Number=1,Type=Integer,Description="Total number of alleles in samples of North-Western European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_nfe_nwe,Number=A,Type=Float,Description="Alternate allele frequency in samples of North-Western European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_nfe_nwe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of North-Western European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=controls_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the controls subset"> -##INFO=<ID=non_topmed_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_topmed subset"> -##INFO=<ID=non_topmed_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_topmed subset"> -##INFO=<ID=non_topmed_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_topmed subset"> -##INFO=<ID=controls_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the non_topmed subset"> -##INFO=<ID=controls_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the controls subset"> -##INFO=<ID=non_topmed_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=controls_AC_nfe_onf,Number=A,Type=Integer,Description="Alternate allele count for samples of Other Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AN_nfe_onf,Number=1,Type=Integer,Description="Total number of alleles in samples of Other Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_AF_nfe_onf,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_nfe_onf,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_neuro subset"> -##INFO=<ID=non_neuro_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_neuro subset"> -##INFO=<ID=non_neuro_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_neuro subset"> -##INFO=<ID=non_topmed_AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_topmed subset, before removing low-confidence genotypes"> -##INFO=<ID=non_topmed_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_topmed subset, before removing low-confidence genotypes"> -##INFO=<ID=non_topmed_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_topmed subset, before removing low-confidence genotypes"> -##INFO=<ID=non_topmed_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_topmed subset, before removing low-confidence genotypes"> -##INFO=<ID=non_neuro_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry"> -##INFO=<ID=AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry"> -##INFO=<ID=AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry"> -##INFO=<ID=nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry"> -##INFO=<ID=non_topmed_AC_afr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_afr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_afr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_afr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry"> -##INFO=<ID=AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry"> -##INFO=<ID=AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry"> -##INFO=<ID=nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry"> -##INFO=<ID=controls_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the controls subset"> -##INFO=<ID=non_neuro_AC_eas_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_eas_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_eas_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_eas_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=controls_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the controls subset"> -##INFO=<ID=AC_nfe,Number=A,Type=Integer,Description="Alternate allele count for samples of Non-Finnish European ancestry"> -##INFO=<ID=AN_nfe,Number=1,Type=Integer,Description="Total number of alleles in samples of Non-Finnish European ancestry"> -##INFO=<ID=AF_nfe,Number=A,Type=Float,Description="Alternate allele frequency in samples of Non-Finnish European ancestry"> -##INFO=<ID=nhomalt_nfe,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Non-Finnish European ancestry"> -##INFO=<ID=non_topmed_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the non_topmed subset"> -##INFO=<ID=non_neuro_AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_AC_eas_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_eas_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_eas_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_eas_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_neuro_AC_raw,Number=A,Type=Integer,Description="Alternate allele count for samples in the non_neuro subset, before removing low-confidence genotypes"> -##INFO=<ID=non_neuro_AN_raw,Number=1,Type=Integer,Description="Total number of alleles in samples in the non_neuro subset, before removing low-confidence genotypes"> -##INFO=<ID=non_neuro_AF_raw,Number=A,Type=Float,Description="Alternate allele frequency in samples in the non_neuro subset, before removing low-confidence genotypes"> -##INFO=<ID=non_neuro_nhomalt_raw,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the non_neuro subset, before removing low-confidence genotypes"> -##INFO=<ID=non_topmed_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_fin_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_fin_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_fin_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_fin_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry"> -##INFO=<ID=AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry"> -##INFO=<ID=AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry"> -##INFO=<ID=nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry"> -##INFO=<ID=AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry"> -##INFO=<ID=AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry"> -##INFO=<ID=AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry"> -##INFO=<ID=nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry"> -##INFO=<ID=controls_AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_AC_amr,Number=A,Type=Integer,Description="Alternate allele count for samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_AN_amr,Number=1,Type=Integer,Description="Total number of alleles in samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_AF_amr,Number=A,Type=Float,Description="Alternate allele frequency in samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_amr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Latino ancestry in the controls subset"> -##INFO=<ID=AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=non_neuro_AC_eas,Number=A,Type=Integer,Description="Alternate allele count for samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_eas,Number=1,Type=Integer,Description="Total number of alleles in samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_eas,Number=A,Type=Float,Description="Alternate allele frequency in samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_eas,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples in the non_neuro subset"> -##INFO=<ID=AC_asj,Number=A,Type=Integer,Description="Alternate allele count for samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=AN_asj,Number=1,Type=Integer,Description="Total number of alleles in samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=AF_asj,Number=A,Type=Float,Description="Alternate allele frequency in samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=nhomalt_asj,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Ashkenazi Jewish ancestry"> -##INFO=<ID=controls_AC_nfe_est,Number=A,Type=Integer,Description="Alternate allele count for samples of Estonian ancestry in the controls subset"> -##INFO=<ID=controls_AN_nfe_est,Number=1,Type=Integer,Description="Total number of alleles in samples of Estonian ancestry in the controls subset"> -##INFO=<ID=controls_AF_nfe_est,Number=A,Type=Float,Description="Alternate allele frequency in samples of Estonian ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_nfe_est,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Estonian ancestry in the controls subset"> -##INFO=<ID=non_topmed_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry"> -##INFO=<ID=AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry"> -##INFO=<ID=AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry"> -##INFO=<ID=nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry"> -##INFO=<ID=non_neuro_AC_nfe_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_nfe_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_nfe_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_nfe_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=controls_AC_female,Number=A,Type=Integer,Description="Alternate allele count for female samples in the controls subset"> -##INFO=<ID=controls_AN_female,Number=1,Type=Integer,Description="Total number of alleles in female samples in the controls subset"> -##INFO=<ID=controls_AF_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples in the controls subset"> -##INFO=<ID=controls_nhomalt_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples in the controls subset"> -##INFO=<ID=non_topmed_AC_fin,Number=A,Type=Integer,Description="Alternate allele count for samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_fin,Number=1,Type=Integer,Description="Total number of alleles in samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_fin,Number=A,Type=Float,Description="Alternate allele frequency in samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_fin,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Finnish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_nfe_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_nfe_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_nfe_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_nfe_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=controls_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=non_topmed_AC_asj_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_asj_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_asj_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_asj_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_topmed subset"> -##INFO=<ID=non_neuro_AC_oth,Number=A,Type=Integer,Description="Alternate allele count for samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_oth,Number=1,Type=Integer,Description="Total number of alleles in samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_oth,Number=A,Type=Float,Description="Alternate allele frequency in samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_oth,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=AC_male,Number=A,Type=Integer,Description="Alternate allele count for male samples"> -##INFO=<ID=AN_male,Number=1,Type=Integer,Description="Total number of alleles in male samples"> -##INFO=<ID=AF_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples"> -##INFO=<ID=nhomalt_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples"> -##INFO=<ID=controls_AC_fin_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_AN_fin_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_AF_fin_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_fin_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Finnish ancestry in the controls subset"> -##INFO=<ID=controls_AC_asj_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_AN_asj_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_AF_asj_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=controls_nhomalt_asj_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the controls subset"> -##INFO=<ID=AC_amr_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Latino ancestry"> -##INFO=<ID=AN_amr_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Latino ancestry"> -##INFO=<ID=AF_amr_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Latino ancestry"> -##INFO=<ID=nhomalt_amr_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Latino ancestry"> -##INFO=<ID=AC_amr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Latino ancestry"> -##INFO=<ID=AN_amr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Latino ancestry"> -##INFO=<ID=AF_amr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Latino ancestry"> -##INFO=<ID=nhomalt_amr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Latino ancestry"> -##INFO=<ID=AC_oth_male,Number=A,Type=Integer,Description="Alternate allele count for male samples of Other ancestry"> -##INFO=<ID=AN_oth_male,Number=1,Type=Integer,Description="Total number of alleles in male samples of Other ancestry"> -##INFO=<ID=AF_oth_male,Number=A,Type=Float,Description="Alternate allele frequency in male samples of Other ancestry"> -##INFO=<ID=nhomalt_oth_male,Number=A,Type=Integer,Description="Count of homozygous individuals in male samples of Other ancestry"> -##INFO=<ID=non_neuro_AC_nfe_seu,Number=A,Type=Integer,Description="Alternate allele count for samples of Southern European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_nfe_seu,Number=1,Type=Integer,Description="Total number of alleles in samples of Southern European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_nfe_seu,Number=A,Type=Float,Description="Alternate allele frequency in samples of Southern European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_nfe_seu,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of Southern European ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_AC_afr_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_afr_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_afr_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_afr_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_afr,Number=A,Type=Integer,Description="Alternate allele count for samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_afr,Number=1,Type=Integer,Description="Total number of alleles in samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_afr,Number=A,Type=Float,Description="Alternate allele frequency in samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_afr,Number=A,Type=Integer,Description="Count of homozygous individuals in samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=controls_AC,Number=A,Type=Integer,Description="Alternate allele count for samples in the controls subset"> -##INFO=<ID=controls_AN,Number=1,Type=Integer,Description="Total number of alleles in samples in the controls subset"> -##INFO=<ID=controls_AF,Number=A,Type=Float,Description="Alternate allele frequency in samples in the controls subset"> -##INFO=<ID=controls_nhomalt,Number=A,Type=Integer,Description="Count of homozygous individuals in samples in the controls subset"> -##INFO=<ID=non_neuro_AC_oth_female,Number=A,Type=Integer,Description="Alternate allele count for female samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_oth_female,Number=1,Type=Integer,Description="Total number of alleles in female samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_oth_female,Number=A,Type=Float,Description="Alternate allele frequency in female samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_oth_female,Number=A,Type=Integer,Description="Count of homozygous individuals in female samples of Other ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_topmed subset"> -##INFO=<ID=faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry"> -##INFO=<ID=faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry"> -##INFO=<ID=controls_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=controls_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the controls subset"> -##INFO=<ID=faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry"> -##INFO=<ID=faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry"> -##INFO=<ID=faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry"> -##INFO=<ID=faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry"> -##INFO=<ID=faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples"> -##INFO=<ID=faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples"> -##INFO=<ID=non_neuro_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_neuro subset"> -##INFO=<ID=controls_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=controls_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the controls subset"> -##INFO=<ID=non_topmed_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the non_topmed subset"> -##INFO=<ID=non_topmed_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the non_topmed subset"> -##INFO=<ID=non_neuro_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the non_neuro subset"> -##INFO=<ID=non_neuro_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the non_neuro subset"> -##INFO=<ID=non_topmed_faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_topmed subset"> -##INFO=<ID=controls_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the controls subset"> -##INFO=<ID=controls_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the controls subset"> -##INFO=<ID=faf95_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry"> -##INFO=<ID=faf99_nfe,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry"> -##INFO=<ID=non_topmed_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_topmed subset"> -##INFO=<ID=controls_faf95_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the controls subset"> -##INFO=<ID=controls_faf99_amr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the controls subset"> -##INFO=<ID=non_neuro_faf95_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_neuro_faf99_eas,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_neuro subset"> -##INFO=<ID=non_topmed_faf95_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=non_topmed_faf99_afr,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_topmed subset"> -##INFO=<ID=controls_faf95,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 95% CI) for samples in the controls subset"> -##INFO=<ID=controls_faf99,Number=A,Type=Float,Description="Filtering allele frequency (using Poisson 99% CI) for samples in the controls subset"> -##INFO=<ID=controls_popmax,Number=A,Type=String,Description="Population with maximum AF in the controls subset"> -##INFO=<ID=controls_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the controls subset"> -##INFO=<ID=controls_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the controls subset"> -##INFO=<ID=controls_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the controls subset"> -##INFO=<ID=controls_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the controls subset"> -##INFO=<ID=popmax,Number=A,Type=String,Description="Population with maximum AF"> -##INFO=<ID=AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF"> -##INFO=<ID=AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF"> -##INFO=<ID=AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry)"> -##INFO=<ID=nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency"> -##INFO=<ID=age_hist_het_bin_freq,Number=A,Type=String,Description="Histogram of ages of heterozygous individuals; bin edges are: 30.0|35.0|40.0|45.0|50.0|55.0|60.0|65.0|70.0|75.0|80.0; total number of individuals of any genotype bin: 2522|623|663|923|1363|1666|1254|1001|640|362|154|70"> -##INFO=<ID=age_hist_het_n_smaller,Number=A,Type=Integer,Description="Count of age values falling below lowest histogram bin edge for heterozygous individuals"> -##INFO=<ID=age_hist_het_n_larger,Number=A,Type=Integer,Description="Count of age values falling above highest histogram bin edge for heterozygous individuals"> -##INFO=<ID=age_hist_hom_bin_freq,Number=A,Type=String,Description="Histogram of ages of homozygous alternate individuals; bin edges are: 30.0|35.0|40.0|45.0|50.0|55.0|60.0|65.0|70.0|75.0|80.0; total number of individuals of any genotype bin: 2522|623|663|923|1363|1666|1254|1001|640|362|154|70"> -##INFO=<ID=age_hist_hom_n_smaller,Number=A,Type=Integer,Description="Count of age values falling below lowest histogram bin edge for homozygous alternate individuals"> -##INFO=<ID=age_hist_hom_n_larger,Number=A,Type=Integer,Description="Count of age values falling above highest histogram bin edge for homozygous alternate individuals"> -##INFO=<ID=non_neuro_popmax,Number=A,Type=String,Description="Population with maximum AF in the non_neuro subset"> -##INFO=<ID=non_neuro_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the non_neuro subset"> -##INFO=<ID=non_neuro_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the non_neuro subset"> -##INFO=<ID=non_neuro_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the non_neuro subset"> -##INFO=<ID=non_neuro_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the non_neuro subset"> -##INFO=<ID=non_topmed_popmax,Number=A,Type=String,Description="Population with maximum AF in the non_topmed subset"> -##INFO=<ID=non_topmed_AC_popmax,Number=A,Type=Integer,Description="Allele count in the population with the maximum AF in the non_topmed subset"> -##INFO=<ID=non_topmed_AN_popmax,Number=A,Type=Integer,Description="Total number of alleles in the population with the maximum AF in the non_topmed subset"> -##INFO=<ID=non_topmed_AF_popmax,Number=A,Type=Float,Description="Maximum allele frequency across populations (excluding samples of Ashkenazi, Finnish, and indeterminate ancestry) in the non_topmed subset"> -##INFO=<ID=non_topmed_nhomalt_popmax,Number=A,Type=Integer,Description="Count of homozygous individuals in the population with the maximum allele frequency in the non_topmed subset"> -##INFO=<ID=vep,Number=.,Type=String,Description="Consequence annotations from Ensembl VEP. Format: Allele|Consequence|IMPACT|SYMBOL|Gene|Feature_type|Feature|BIOTYPE|EXON|INTRON|HGVSc|HGVSp|cDNA_position|CDS_position|Protein_position|Amino_acids|Codons|Existing_variation|ALLELE_NUM|DISTANCE|STRAND|FLAGS|VARIANT_CLASS|MINIMISED|SYMBOL_SOURCE|HGNC_ID|CANONICAL|TSL|APPRIS|CCDS|ENSP|SWISSPROT|TREMBL|UNIPARC|GENE_PHENO|SIFT|PolyPhen|DOMAINS|HGVS_OFFSET|GMAF|AFR_MAF|AMR_MAF|EAS_MAF|EUR_MAF|SAS_MAF|AA_MAF|EA_MAF|ExAC_MAF|ExAC_Adj_MAF|ExAC_AFR_MAF|ExAC_AMR_MAF|ExAC_EAS_MAF|ExAC_FIN_MAF|ExAC_NFE_MAF|ExAC_OTH_MAF|ExAC_SAS_MAF|CLIN_SIG|SOMATIC|PHENO|PUBMED|MOTIF_NAME|MOTIF_POS|HIGH_INF_POS|MOTIF_SCORE_CHANGE|LoF|LoF_filter|LoF_flags|LoF_info"> -##contig=<ID=1,length=249250621,assembly=gnomAD_GRCh37> -##contig=<ID=2,length=243199373,assembly=gnomAD_GRCh37> -##contig=<ID=3,length=198022430,assembly=gnomAD_GRCh37> -##contig=<ID=4,length=191154276,assembly=gnomAD_GRCh37> -##contig=<ID=5,length=180915260,assembly=gnomAD_GRCh37> -##contig=<ID=6,length=171115067,assembly=gnomAD_GRCh37> -##contig=<ID=7,length=159138663,assembly=gnomAD_GRCh37> -##contig=<ID=8,length=146364022,assembly=gnomAD_GRCh37> -##contig=<ID=9,length=141213431,assembly=gnomAD_GRCh37> -##contig=<ID=10,length=135534747,assembly=gnomAD_GRCh37> -##contig=<ID=11,length=135006516,assembly=gnomAD_GRCh37> -##contig=<ID=12,length=133851895,assembly=gnomAD_GRCh37> -##contig=<ID=13,length=115169878,assembly=gnomAD_GRCh37> -##contig=<ID=14,length=107349540,assembly=gnomAD_GRCh37> -##contig=<ID=15,length=102531392,assembly=gnomAD_GRCh37> -##contig=<ID=16,length=90354753,assembly=gnomAD_GRCh37> -##contig=<ID=17,length=81195210,assembly=gnomAD_GRCh37> -##contig=<ID=18,length=78077248,assembly=gnomAD_GRCh37> -##contig=<ID=19,length=59128983,assembly=gnomAD_GRCh37> -##contig=<ID=20,length=63025520,assembly=gnomAD_GRCh37> -##contig=<ID=21,length=48129895,assembly=gnomAD_GRCh37> -##contig=<ID=22,length=51304566,assembly=gnomAD_GRCh37> -##contig=<ID=X,length=155270560,assembly=gnomAD_GRCh37> -##contig=<ID=Y,length=59373566,assembly=gnomAD_GRCh37> -#CHROM POS ID REF ALT QUAL FILTER INFO -3 46414935 rs938517991 AT A 9974.16 PASS AC=2;AN=250946;AF=7.96984e-06;rf_tp_probability=7.30763e-01;FS=6.15000e-01;InbreedingCoeff=3.17000e-02;MQ=5.14700e+01;MQRankSum=2.82000e-01;QD=2.79400e+01;ReadPosRankSum=-6.86000e-01;SOR=6.59000e-01;BaseQRankSum=-1.73300e+00;ClippingRankSum=-2.84000e-01;DP=8634492;VQSLOD=1.82000e+00;VQSR_culprit=FS;segdup;variant_type=indel;allele_type=del;n_alt_alleles=1;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|1;gq_hist_all_bin_freq=31|39|36|114|142|101|239|274|152|334|372|207|850|196|647|369|1084|164|1324|119070;dp_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0;dp_hist_alt_n_larger=1;dp_hist_all_bin_freq=26|124|288|371|677|862|7327|47694|38309|14081|5588|3216|1941|1338|875|614|486|350|301|238;dp_hist_all_n_larger=1042;ab_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0;AC_nfe_seu=0;AN_nfe_seu=11470;AF_nfe_seu=0.00000e+00;nhomalt_nfe_seu=0;controls_AC_afr_male=0;controls_AN_afr_male=2924;controls_AF_afr_male=0.00000e+00;controls_nhomalt_afr_male=0;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3816;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=0;non_topmed_AN_amr=34444;non_topmed_AF_amr=0.00000e+00;non_topmed_nhomalt_amr=0;non_cancer_AC_asj_female=0;non_cancer_AN_asj_female=4594;non_cancer_AF_asj_female=0.00000e+00;non_cancer_nhomalt_asj_female=0;AC_raw=2;AN_raw=251490;AF_raw=7.95260e-06;nhomalt_raw=1;AC_fin_female=0;AN_fin_female=10346;AF_fin_female=0.00000e+00;nhomalt_fin_female=0;non_cancer_AC_oth_female=0;non_cancer_AN_oth_female=2672;non_cancer_AF_oth_female=0.00000e+00;non_cancer_nhomalt_oth_female=0;AC_nfe_bgr=0;AN_nfe_bgr=2670;AF_nfe_bgr=0.00000e+00;nhomalt_nfe_bgr=0;non_neuro_AC_asj_female=0;non_neuro_AN_asj_female=3084;non_neuro_AF_asj_female=0.00000e+00;non_neuro_nhomalt_asj_female=0;AC_sas_male=0;AN_sas_male=23072;AF_sas_male=0.00000e+00;nhomalt_sas_male=0;non_neuro_AC_afr_male=0;non_neuro_AN_afr_male=6164;non_neuro_AF_afr_male=0.00000e+00;non_neuro_nhomalt_afr_male=0;AC_afr_male=0;AN_afr_male=6186;AF_afr_male=0.00000e+00;nhomalt_afr_male=0;AC_afr=0;AN_afr=16192;AF_afr=0.00000e+00;nhomalt_afr=0;controls_AC_nfe_swe=0;controls_AN_nfe_swe=12810;controls_AF_nfe_swe=0.00000e+00;controls_nhomalt_nfe_swe=0;non_neuro_AC_afr_female=0;non_neuro_AN_afr_female=9990;non_neuro_AF_afr_female=0.00000e+00;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=0;non_topmed_AN_amr_female=20188;non_topmed_AF_amr_female=0.00000e+00;non_topmed_nhomalt_amr_female=0;non_cancer_AC_female=2;non_cancer_AN_female=107412;non_cancer_AF_female=1.86199e-05;non_cancer_nhomalt_female=1;non_cancer_AC_nfe_onf=0;non_cancer_AN_nfe_onf=24540;non_cancer_AF_nfe_onf=0.00000e+00;non_cancer_nhomalt_nfe_onf=0;non_cancer_AC_male=0;non_cancer_AN_male=129014;non_cancer_AF_male=0.00000e+00;non_cancer_nhomalt_male=0;non_topmed_AC_oth_female=0;non_topmed_AN_oth_female=2870;non_topmed_AF_oth_female=0.00000e+00;non_topmed_nhomalt_oth_female=0;AC_eas_female=0;AN_eas_female=9328;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=0;non_cancer_AN_sas_female=7494;non_cancer_AF_sas_female=0.00000e+00;non_cancer_nhomalt_sas_female=0;AC_afr_female=0;AN_afr_female=10006;AF_afr_female=0.00000e+00;nhomalt_afr_female=0;AC_sas=0;AN_sas=30616;AF_sas=0.00000e+00;nhomalt_sas=0;non_neuro_AC_female=2;non_neuro_AN_female=95468;non_neuro_AF_female=2.09494e-05;non_neuro_nhomalt_female=1;controls_AC_afr=0;controls_AN_afr=7164;controls_AF_afr=0.00000e+00;controls_nhomalt_afr=0;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=0;AN_nfe_onf=30864;AF_nfe_onf=0.00000e+00;nhomalt_nfe_onf=0;non_cancer_AC_amr_male=0;non_cancer_AN_amr_male=14166;non_cancer_AF_amr_male=0.00000e+00;non_cancer_nhomalt_amr_male=0;controls_AC_fin_male=0;controls_AN_fin_male=6904;controls_AF_fin_male=0.00000e+00;controls_nhomalt_fin_male=0;non_neuro_AC_nfe_nwe=2;non_neuro_AN_nfe_nwe=35284;non_neuro_AF_nfe_nwe=5.66829e-05;non_neuro_nhomalt_nfe_nwe=1;AC_fin_male=0;AN_fin_male=11254;AF_fin_male=0.00000e+00;nhomalt_fin_male=0;AC_nfe_female=2;AN_nfe_female=49966;AF_nfe_female=4.00272e-05;nhomalt_nfe_female=1;AC_amr=0;AN_amr=34578;AF_amr=0.00000e+00;nhomalt_amr=0;non_topmed_AC_nfe_male=0;non_topmed_AN_nfe_male=62670;non_topmed_AF_nfe_male=0.00000e+00;non_topmed_nhomalt_nfe_male=0;non_neuro_AC_sas=0;non_neuro_AN_sas=30608;non_neuro_AF_sas=0.00000e+00;non_neuro_nhomalt_sas=0;non_cancer_AC_fin_male=0;non_cancer_AN_fin_male=11250;non_cancer_AF_fin_male=0.00000e+00;non_cancer_nhomalt_fin_male=0;non_cancer_AC_nfe_seu=0;non_cancer_AN_nfe_seu=10580;non_cancer_AF_nfe_seu=0.00000e+00;non_cancer_nhomalt_nfe_seu=0;AC_eas=0;AN_eas=18394;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=1;non_neuro_AC_nfe_female=2;non_neuro_AN_nfe_female=39740;non_neuro_AF_nfe_female=5.03271e-05;non_neuro_nhomalt_nfe_female=1;non_neuro_AC_afr=0;non_neuro_AN_afr=16154;non_neuro_AF_afr=0.00000e+00;non_neuro_nhomalt_afr=0;controls_AC_raw=2;controls_AN_raw=109408;controls_AF_raw=1.82802e-05;controls_nhomalt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r=0.00000e+00;non_neuro_faf99_afr=0.00000e+00;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=0.00000e+00;non_neuro_faf99_amr=0.00000e+00;non_topmed_faf95_sas=0.00000e+00;non_topmed_faf99_sas=0.00000e+00;controls_faf95_nfe=7.75000e-06;controls_faf99_nfe=7.90000e-06;non_cancer_faf95_afr=0.00000e+00;non_cancer_faf99_afr=0.00000e+00;non_cancer_faf95_amr=0.00000e+00;non_cancer_faf99_amr=0.00000e+00;non_topmed_faf95=1.36000e-06;non_topmed_faf99=5.10000e-07;non_neuro_faf95_nfe=3.71000e-06;non_neuro_faf99_nfe=3.39000e-06;non_neuro_faf95=1.60000e-06;non_neuro_faf99=1.60000e-06;non_topmed_faf95_nfe=2.98000e-06;non_topmed_faf99_nfe=3.12000e-06;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=0.00000e+00;controls_faf99_sas=0.00000e+00;faf95_nfe=2.93000e-06;faf99_nfe=3.10000e-06;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=0.00000e+00;controls_faf99_amr=0.00000e+00;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_cancer_faf95_nfe=3.24000e-06;non_cancer_faf99_nfe=3.21000e-06;non_cancer_faf95=1.41000e-06;non_cancer_faf99=5.30000e-07;non_cancer_faf95_sas=0.00000e+00;non_cancer_faf99_sas=0.00000e+00;non_topmed_faf95_afr=0.00000e+00;non_topmed_faf99_afr=0.00000e+00;controls_faf95=3.04000e-06;controls_faf99=3.14000e-06;popmax=nfe;AC_popmax=2;AN_popmax=113380;AF_popmax=1.76398e-05;nhomalt_popmax=1;age_hist_het_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_het_n_smaller=0;age_hist_het_n_larger=0;age_hist_hom_bin_freq=0|0|0|0|0|0|0|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;non_topmed_popmax=nfe;non_topmed_AC_popmax=2;non_topmed_AN_popmax=111300;non_topmed_AF_popmax=1.79695e-05;non_topmed_nhomalt_popmax=1;non_neuro_popmax=nfe;non_neuro_AC_popmax=2;non_neuro_AN_popmax=89416;non_neuro_AF_popmax=2.23674e-05;non_neuro_nhomalt_popmax=1;non_cancer_popmax=nfe;non_cancer_AC_popmax=2;non_cancer_AN_popmax=102380;non_cancer_AF_popmax=1.95351e-05;non_cancer_nhomalt_popmax=1;controls_popmax=nfe;controls_AC_popmax=2;controls_AN_popmax=42750;controls_AF_popmax=4.67836e-05;controls_nhomalt_popmax=1;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.546delT|ENSP00000292303.4:p.Pro183HisfsTer14|689|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3||||||||||||||||||||||||||HC|||GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-553&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.546delT|ENSP00000343985.4:p.Pro183HisfsTer14|900|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110|3||||||||||||||||||||||||||HC|||GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-553&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.546delT|ENSP00000404881.1:p.Pro183HisfsTer14|776|543|181|H/X|caT/ca||1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110|3||||||||||||||||||||||||||HC||SINGLE_EXON|GERP_DIST:922.109800000004&BP_DIST:516&PERCENTILE:0.512747875354108&DIST_FROM_LAST_EXON:-775&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2028delA||||||||1||-1||deletion|1|Clone_based_vega_gene||YES||||||||||||||||||||||||||||||||||||||||| -3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 74264261.52 PASS AC=18640;AN=251006;AF=7.42612e-02;rf_tp_probability=7.40136e-01;FS=1.76900e+00;InbreedingCoeff=2.78000e-02;MQ=5.34100e+01;MQRankSum=-6.57200e+00;QD=1.49000e+01;ReadPosRankSum=-3.87000e-01;SOR=6.17000e-01;VQSR_POSITIVE_TRAIN_SITE;BaseQRankSum=1.27000e+00;ClippingRankSum=-4.00000e-03;DP=12360054;VQSLOD=1.54000e+00;VQSR_culprit=MQRankSum;segdup;rf_positive_label;rf_label=TP;rf_train;variant_type=mixed;allele_type=del;n_alt_alleles=2;was_mixed;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|2|3|3|0|1|1|4|4|8|6|4|9|5|14|9|10|13|11|17651;gq_hist_all_bin_freq=35|21|18|41|68|50|96|142|88|187|181|97|371|113|317|193|524|127|739|122337;dp_hist_alt_bin_freq=4|21|30|42|78|135|195|326|396|549|644|740|684|801|667|616|514|449|410|378;dp_hist_alt_n_larger=10079;dp_hist_all_bin_freq=24|119|259|384|577|783|6619|44130|35571|12320|4446|2614|1673|1467|1079|894|716|585|532|480;dp_hist_all_n_larger=10476;ab_hist_alt_bin_freq=0|1|9|46|240|959|2896|6505|4575|1107|318|50|13|6|0|4|0|2|11|42;AC_nfe_seu=765;AN_nfe_seu=11476;AF_nfe_seu=6.66609e-02;nhomalt_nfe_seu=31;controls_AC_afr_male=40;controls_AN_afr_male=2924;controls_AF_afr_male=1.36799e-02;controls_nhomalt_afr_male=1;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3814;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=1012;non_topmed_AN_amr=34446;non_topmed_AF_amr=2.93793e-02;non_topmed_nhomalt_amr=10;non_cancer_AC_asj_female=577;non_cancer_AN_asj_female=4592;non_cancer_AF_asj_female=1.25653e-01;non_cancer_nhomalt_asj_female=43;AC_raw=18732;AN_raw=251490;AF_raw=7.44841e-02;nhomalt_raw=974;AC_fin_female=1378;AN_fin_female=10336;AF_fin_female=1.33320e-01;nhomalt_fin_female=87;non_cancer_AC_oth_female=195;non_cancer_AN_oth_female=2672;non_cancer_AF_oth_female=7.29790e-02;non_cancer_nhomalt_oth_female=10;AC_nfe_bgr=173;AN_nfe_bgr=2670;AF_nfe_bgr=6.47940e-02;nhomalt_nfe_bgr=7;non_neuro_AC_asj_female=393;non_neuro_AN_asj_female=3086;non_neuro_AF_asj_female=1.27349e-01;non_neuro_nhomalt_asj_female=28;AC_sas_male=391;AN_sas_male=23066;AF_sas_male=1.69514e-02;nhomalt_sas_male=5;non_neuro_AC_afr_male=106;non_neuro_AN_afr_male=6162;non_neuro_AF_afr_male=1.72022e-02;non_neuro_nhomalt_afr_male=2;AC_afr_male=107;AN_afr_male=6184;AF_afr_male=1.73027e-02;nhomalt_afr_male=2;AC_afr=311;AN_afr=16196;AF_afr=1.92023e-02;nhomalt_afr=2;controls_AC_nfe_swe=1578;controls_AN_nfe_swe=12810;controls_AF_nfe_swe=1.23185e-01;controls_nhomalt_nfe_swe=78;non_neuro_AC_afr_female=203;non_neuro_AN_afr_female=9996;non_neuro_AF_afr_female=2.03081e-02;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=568;non_topmed_AN_amr_female=20190;non_topmed_AF_amr_female=2.81327e-02;non_topmed_nhomalt_amr_female=5;non_cancer_AC_female=7819;non_cancer_AN_female=107454;non_cancer_AF_female=7.27660e-02;non_cancer_nhomalt_female=408;non_cancer_AC_nfe_onf=2601;non_cancer_AN_nfe_onf=24572;non_cancer_AF_nfe_onf=1.05852e-01;non_cancer_nhomalt_nfe_onf=132;non_cancer_AC_male=9543;non_cancer_AN_male=129014;non_cancer_AF_male=7.39687e-02;non_cancer_nhomalt_male=504;non_topmed_AC_oth_female=210;non_topmed_AN_oth_female=2870;non_topmed_AF_oth_female=7.31707e-02;non_topmed_nhomalt_oth_female=11;AC_eas_female=0;AN_eas_female=9326;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=98;non_cancer_AN_sas_female=7494;non_cancer_AF_sas_female=1.30771e-02;non_cancer_nhomalt_sas_female=0;AC_afr_female=204;AN_afr_female=10012;AF_afr_female=2.03755e-02;nhomalt_afr_female=0;AC_sas=489;AN_sas=30610;AF_sas=1.59752e-02;nhomalt_sas=5;non_neuro_AC_female=6734;non_neuro_AN_female=95514;non_neuro_AF_female=7.05028e-02;non_neuro_nhomalt_female=351;controls_AC_afr=111;controls_AN_afr=7164;controls_AF_afr=1.54941e-02;controls_nhomalt_afr=1;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=3264;AN_nfe_onf=30904;AF_nfe_onf=1.05617e-01;nhomalt_nfe_onf=163;non_cancer_AC_amr_male=434;non_cancer_AN_amr_male=14166;non_cancer_AF_amr_male=3.06367e-02;non_cancer_nhomalt_amr_male=5;controls_AC_fin_male=899;controls_AN_fin_male=6890;controls_AF_fin_male=1.30479e-01;controls_nhomalt_fin_male=59;non_neuro_AC_nfe_nwe=4096;non_neuro_AN_nfe_nwe=35318;non_neuro_AF_nfe_nwe=1.15975e-01;non_neuro_nhomalt_nfe_nwe=236;AC_fin_male=1503;AN_fin_male=11244;AF_fin_male=1.33671e-01;nhomalt_fin_male=105;AC_nfe_female=5454;AN_nfe_female=50030;AF_nfe_female=1.09015e-01;nhomalt_nfe_female=293;AC_amr=1014;AN_amr=34580;AF_amr=2.93233e-02;nhomalt_amr=10;non_topmed_AC_nfe_male=6681;non_topmed_AN_nfe_male=62690;non_topmed_AF_nfe_male=1.06572e-01;non_topmed_nhomalt_nfe_male=350;non_neuro_AC_sas=489;non_neuro_AN_sas=30602;non_neuro_AF_sas=1.59793e-02;non_neuro_nhomalt_sas=5;non_cancer_AC_fin_male=1503;non_cancer_AN_fin_male=11240;non_cancer_AF_fin_male=1.33719e-01;non_cancer_nhomalt_fin_male=105;non_cancer_AC_nfe_seu=709;non_cancer_AN_nfe_seu=10584;non_cancer_AF_nfe_seu=6.69879e-02;non_cancer_nhomalt_nfe_seu=28;AC_eas=2;AN_eas=18392;AF_eas=1.08743e-04;nhomalt_eas=0;nhomalt=966;non_neuro_AC_nfe_female=4371;non_neuro_AN_nfe_female=39790;non_neuro_AF_nfe_female=1.09852e-01;non_neuro_nhomalt_nfe_female=241;non_neuro_AC_afr=309;non_neuro_AN_afr=16158;non_neuro_AF_afr=1.91237e-02;non_neuro_nhomalt_afr=2;controls_AC_raw=7712;controls_AN_raw=109408;controls_AF_raw=7.04884e-02;controls_nhomalt_raw=398;non_cancer_AC_eas=0;non_cancer_AN_eas=17690;non_cancer_AF_eas=0.00000e+00;non_cancer_nhomalt_eas=0;non_cancer_AC_amr_female=559;non_cancer_AN_amr_female=20082;non_cancer_AF_amr_female=2.78359e-02;non_cancer_nhomalt_amr_female=5;non_neuro_AC_nfe_swe=1812;non_neuro_AN_nfe_swe=14776;non_neuro_AF_nfe_swe=1.22631e-01;non_neuro_nhomalt_nfe_swe=97;controls_AC_male=4146;controls_AN_male=58070;controls_AF_male=7.13966e-02;controls_nhomalt_male=212;non_topmed_AC_male=10003;non_topmed_AN_male=133316;non_topmed_AF_male=7.50323e-02;non_topmed_nhomalt_male=520;controls_AC_eas_jpn=0;controls_AN_eas_jpn=114;controls_AF_eas_jpn=0.00000e+00;controls_nhomalt_eas_jpn=0;controls_AC_nfe_female=2070;controls_AN_nfe_female=19146;controls_AF_nfe_female=1.08117e-01;controls_nhomalt_nfe_female=111;non_neuro_AC_amr=848;non_neuro_AN_amr=30516;non_neuro_AF_amr=2.77887e-02;non_neuro_nhomalt_amr=9;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=6840;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=682;AN_asj_male=5172;AF_asj_male=1.31864e-01;nhomalt_asj_male=41;controls_AC_nfe_male=2576;controls_AN_nfe_male=23610;controls_AF_nfe_male=1.09106e-01;controls_nhomalt_nfe_male=138;non_neuro_AC_fin=2261;non_neuro_AN_fin=16666;non_neuro_AF_fin=1.35665e-01;non_neuro_nhomalt_fin=155;non_topmed_AC_sas=489;non_topmed_AN_sas=30610;non_topmed_AF_sas=1.59752e-02;non_topmed_nhomalt_sas=5;non_cancer_AC_nfe_female=4823;non_cancer_AN_nfe_female=44172;non_cancer_AF_nfe_female=1.09187e-01;non_cancer_nhomalt_nfe_female=263;AC_oth_female=214;AN_oth_female=2918;AF_oth_female=7.33379e-02;nhomalt_oth_female=11;non_cancer_AC_asj=1236;non_cancer_AN_asj=9560;non_cancer_AF_asj=1.29289e-01;non_cancer_nhomalt_asj=82;AC_nfe_swe=3166;AN_nfe_swe=26128;AF_nfe_swe=1.21173e-01;nhomalt_nfe_swe=167;controls_AC_nfe=4646;controls_AN_nfe=42756;controls_AF_nfe=1.08663e-01;controls_nhomalt_nfe=249;controls_AC_oth_female=75;controls_AN_oth_female=986;controls_AF_oth_female=7.60649e-02;controls_nhomalt_oth_female=5;controls_AC_asj=299;controls_AN_asj=2320;controls_AF_asj=1.28879e-01;controls_nhomalt_asj=13;non_neuro_AC_amr_male=368;non_neuro_AN_amr_male=12252;non_neuro_AF_amr_male=3.00359e-02;non_neuro_nhomalt_amr_male=4;controls_AC_nfe_nwe=1658;controls_AN_nfe_nwe=14442;controls_AF_nfe_nwe=1.14804e-01;controls_nhomalt_nfe_nwe=102;AC_nfe_nwe=4816;AN_nfe_nwe=42042;AF_nfe_nwe=1.14552e-01;nhomalt_nfe_nwe=278;controls_AC_nfe_seu=324;controls_AN_nfe_seu=4760;controls_AF_nfe_seu=6.80672e-02;controls_nhomalt_nfe_seu=13;controls_AC_sas_female=63;controls_AN_sas_female=4214;controls_AF_sas_female=1.49502e-02;controls_nhomalt_sas_female=0;non_neuro_AC_amr_female=480;non_neuro_AN_amr_female=18264;non_neuro_AF_amr_female=2.62812e-02;non_neuro_nhomalt_amr_female=5;non_cancer_AC_eas_jpn=0;non_cancer_AN_eas_jpn=124;non_cancer_AF_eas_jpn=0.00000e+00;non_cancer_nhomalt_eas_jpn=0;non_neuro_AC_nfe_onf=2954;non_neuro_AN_nfe_onf=27774;non_neuro_AF_nfe_onf=1.06358e-01;non_neuro_nhomalt_nfe_onf=153;non_topmed_AC_eas_male=2;non_topmed_AN_eas_male=9062;non_topmed_AF_eas_male=2.20702e-04;non_topmed_nhomalt_eas_male=0;AC_eas_jpn=0;AN_eas_jpn=152;AF_eas_jpn=0.00000e+00;nhomalt_eas_jpn=0;non_cancer_AC_afr_male=90;non_cancer_AN_afr_male=5670;non_cancer_AF_afr_male=1.58730e-02;non_cancer_nhomalt_afr_male=2;non_cancer_AC_afr=282;non_cancer_AN_afr=14842;non_cancer_AF_afr=1.90001e-02;non_cancer_nhomalt_afr=2;controls_AC_amr_female=254;controls_AN_amr_female=10224;controls_AF_amr_female=2.48435e-02;controls_nhomalt_amr_female=1;non_neuro_AC_fin_male=1228;non_neuro_AN_fin_male=9054;non_neuro_AF_fin_male=1.35631e-01;non_neuro_nhomalt_fin_male=85;AC_female=8532;AN_female=115328;AF_female=7.39803e-02;nhomalt_female=441;non_neuro_AC_nfe_bgr=27;non_neuro_AN_nfe_bgr=452;non_neuro_AF_nfe_bgr=5.97345e-02;non_neuro_nhomalt_nfe_bgr=2;non_neuro_AC_oth_male=170;non_neuro_AN_oth_male=2472;non_neuro_AF_oth_male=6.87702e-02;non_neuro_nhomalt_oth_male=9;non_topmed_AC_nfe_est=18;non_topmed_AN_nfe_est=238;non_topmed_AF_nfe_est=7.56303e-02;non_topmed_nhomalt_nfe_est=0;non_topmed_AC_nfe_nwe=4720;non_topmed_AN_nfe_nwe=40928;non_topmed_AF_nfe_nwe=1.15324e-01;non_topmed_nhomalt_nfe_nwe=275;non_topmed_AC_amr_male=444;non_topmed_AN_amr_male=14256;non_topmed_AF_amr_male=3.11448e-02;non_topmed_nhomalt_amr_male=5;non_cancer_AC_amr=993;non_cancer_AN_amr=34248;non_cancer_AF_amr=2.89944e-02;non_cancer_nhomalt_amr=10;non_topmed_AC_nfe_swe=3161;non_topmed_AN_nfe_swe=26066;non_topmed_AF_nfe_swe=1.21269e-01;non_topmed_nhomalt_nfe_swe=167;non_topmed_AC_nfe_onf=3196;non_topmed_AN_nfe_onf=30108;non_topmed_AF_nfe_onf=1.06151e-01;non_topmed_nhomalt_nfe_onf=157;controls_AC_eas_kor=0;controls_AN_eas_kor=1886;controls_AF_eas_kor=0.00000e+00;controls_nhomalt_eas_kor=0;non_topmed_AC_eas_oea=2;non_topmed_AN_eas_oea=14420;non_topmed_AF_eas_oea=1.38696e-04;non_topmed_nhomalt_eas_oea=0;controls_AC_eas_male=0;controls_AN_eas_male=4258;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=64;controls_AN_oth_male=928;controls_AF_oth_male=6.89655e-02;controls_nhomalt_oth_male=4;non_topmed_AC=18352;non_topmed_AN=244418;non_topmed_AF=7.50845e-02;non_topmed_nhomalt=954;controls_AC_fin=1741;controls_AN_fin=13326;controls_AF_fin=1.30647e-01;controls_nhomalt_fin=117;AC_eas_kor=0;AN_eas_kor=3816;AF_eas_kor=0.00000e+00;nhomalt_eas_kor=0;non_neuro_AC_nfe=9628;non_neuro_AN_nfe=89466;non_neuro_AF_nfe=1.07616e-01;non_neuro_nhomalt_nfe=515;non_neuro_AC_fin_female=1033;non_neuro_AN_fin_female=7612;non_neuro_AF_fin_female=1.35707e-01;non_neuro_nhomalt_fin_female=70;non_cancer_AC_nfe_male=6256;non_cancer_AN_nfe_male=58274;non_cancer_AF_nfe_male=1.07355e-01;non_cancer_nhomalt_nfe_male=334;controls_AC_eas_oea=0;controls_AN_eas_oea=7044;controls_AF_eas_oea=0.00000e+00;controls_nhomalt_eas_oea=0;non_topmed_AC_nfe_seu=761;non_topmed_AN_nfe_seu=11382;non_topmed_AF_nfe_seu=6.68600e-02;non_topmed_nhomalt_nfe_seu=31;controls_AC_eas_female=0;controls_AN_eas_female=4786;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=1289;non_topmed_AN_asj=9986;non_topmed_AF_asj=1.29081e-01;non_topmed_nhomalt_asj=85;controls_AC_nfe_onf=1032;controls_AN_nfe_onf=9996;controls_AF_nfe_onf=1.03241e-01;controls_nhomalt_nfe_onf=51;non_neuro_AC=14661;non_neuro_AN=207888;non_neuro_AF=7.05236e-02;non_neuro_nhomalt=750;AC_eas_oea=2;AN_eas_oea=14424;AF_eas_oea=1.38658e-04;nhomalt_eas_oea=0;non_topmed_AC_nfe=12028;non_topmed_AN_nfe=111384;non_topmed_AF_nfe=1.07987e-01;non_topmed_nhomalt_nfe=637;non_cancer_AC_oth=406;non_cancer_AN_oth=5598;non_cancer_AF_oth=7.25259e-02;non_cancer_nhomalt_oth=24;non_topmed_AC_raw=18438;non_topmed_AN_raw=244872;non_topmed_AF_raw=7.52965e-02;non_topmed_nhomalt_raw=962;non_neuro_AC_nfe_est=17;non_neuro_AN_nfe_est=216;non_neuro_AF_nfe_est=7.87037e-02;non_neuro_nhomalt_nfe_est=0;non_topmed_AC_oth_male=225;non_topmed_AN_oth_male=3176;non_topmed_AF_oth_male=7.08438e-02;non_topmed_nhomalt_oth_male=13;non_cancer_AC_oth_male=211;non_cancer_AN_oth_male=2926;non_cancer_AF_oth_male=7.21121e-02;non_cancer_nhomalt_oth_male=14;AC_nfe_est=19;AN_nfe_est=242;AF_nfe_est=7.85124e-02;nhomalt_nfe_est=0;non_cancer_AC_afr_female=192;non_cancer_AN_afr_female=9172;non_cancer_AF_afr_female=2.09333e-02;non_cancer_nhomalt_afr_female=0;non_topmed_AC_afr_male=78;non_topmed_AN_afr_male=4686;non_topmed_AF_afr_male=1.66453e-02;non_topmed_nhomalt_afr_male=1;AC_eas_male=2;AN_eas_male=9066;AF_eas_male=2.20604e-04;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=9044;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=2;non_neuro_AN_eas_male=6574;non_neuro_AF_eas_male=3.04229e-04;non_neuro_nhomalt_eas_male=0;non_cancer_AC_nfe_nwe=4512;non_cancer_AN_nfe_nwe=39322;non_cancer_AF_nfe_nwe=1.14745e-01;non_cancer_nhomalt_nfe_nwe=266;controls_AC_sas=257;controls_AN_sas=15686;controls_AF_sas=1.63840e-02;controls_nhomalt_sas=4;non_neuro_AC_sas_male=391;non_neuro_AN_sas_male=23060;non_neuro_AF_sas_male=1.69558e-02;non_neuro_nhomalt_sas_male=5;non_neuro_AC_asj_male=405;non_neuro_AN_asj_male=3124;non_neuro_AF_asj_male=1.29641e-01;non_neuro_nhomalt_asj_male=20;non_cancer_AC_nfe_bgr=166;non_cancer_AN_nfe_bgr=2526;non_cancer_AF_nfe_bgr=6.57165e-02;non_cancer_nhomalt_nfe_bgr=7;controls_AC_oth=139;controls_AN_oth=1914;controls_AF_oth=7.26228e-02;controls_nhomalt_oth=9;non_cancer_AC_eas_female=0;non_cancer_AN_eas_female=8946;non_cancer_AF_eas_female=0.00000e+00;non_cancer_nhomalt_eas_female=0;AC_nfe=12203;AN_nfe=113462;AF_nfe=1.07551e-01;nhomalt_nfe=646;non_topmed_AC_female=8349;non_topmed_AN_female=111102;non_topmed_AF_female=7.51472e-02;non_topmed_nhomalt_female=434;non_neuro_AC_asj=798;non_neuro_AN_asj=6210;non_neuro_AF_asj=1.28502e-01;non_neuro_nhomalt_asj=48;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=9326;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=14725;non_neuro_AN_raw=208132;non_neuro_AF_raw=7.07484e-02;non_neuro_nhomalt_raw=754;non_topmed_AC_eas=2;non_topmed_AN_eas=18388;non_topmed_AF_eas=1.08767e-04;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=1503;non_topmed_AN_fin_male=11244;non_topmed_AF_fin_male=1.33671e-01;non_topmed_nhomalt_fin_male=105;non_cancer_AC_asj_male=659;non_cancer_AN_asj_male=4968;non_cancer_AF_asj_male=1.32649e-01;non_cancer_nhomalt_asj_male=39;AC_fin=2881;AN_fin=21580;AF_fin=1.33503e-01;nhomalt_fin=192;AC_nfe_male=6749;AN_nfe_male=63432;AF_nfe_male=1.06397e-01;nhomalt_nfe_male=353;non_topmed_AC_eas_kor=0;non_topmed_AN_eas_kor=3816;non_topmed_AF_eas_kor=0.00000e+00;non_topmed_nhomalt_eas_kor=0;controls_AC_amr_male=222;controls_AN_amr_male=6882;controls_AF_amr_male=3.22581e-02;controls_nhomalt_amr_male=1;non_neuro_AC_eas_oea=2;non_neuro_AN_eas_oea=9450;non_neuro_AF_eas_oea=2.11640e-04;non_neuro_nhomalt_eas_oea=0;AC_sas_female=98;AN_sas_female=7544;AF_sas_female=1.29905e-02;nhomalt_sas_female=0;controls_AC_afr_female=71;controls_AN_afr_female=4240;controls_AF_afr_female=1.67453e-02;controls_nhomalt_afr_female=0;controls_AC_amr=476;controls_AN_amr=17106;controls_AF_amr=2.78265e-02;controls_nhomalt_amr=2;non_topmed_AC_eas_jpn=0;non_topmed_AN_eas_jpn=152;non_topmed_AF_eas_jpn=0.00000e+00;non_topmed_nhomalt_eas_jpn=0;AC_asj_female=614;AN_asj_female=4896;AF_asj_female=1.25408e-01;nhomalt_asj_female=45;non_topmed_AC_nfe_bgr=172;non_topmed_AN_nfe_bgr=2662;non_topmed_AF_nfe_bgr=6.46131e-02;non_topmed_nhomalt_nfe_bgr=7;non_cancer_AC_nfe_est=11;non_cancer_AN_nfe_est=158;non_cancer_AF_nfe_est=6.96203e-02;non_cancer_nhomalt_nfe_est=0;non_neuro_AC_eas=2;non_neuro_AN_eas=13414;non_neuro_AF_eas=1.49098e-04;non_neuro_nhomalt_eas=0;non_cancer_AC_nfe=11079;non_cancer_AN_nfe=102446;non_cancer_AF_nfe=1.08145e-01;non_cancer_nhomalt_nfe=597;non_neuro_AC_male=7927;non_neuro_AN_male=112374;non_neuro_AF_male=7.05412e-02;non_neuro_nhomalt_male=399;non_neuro_AC_sas_female=98;non_neuro_AN_sas_female=7542;non_neuro_AF_sas_female=1.29939e-02;non_neuro_nhomalt_sas_female=0;AC_asj=1296;AN_asj=10068;AF_asj=1.28725e-01;nhomalt_asj=86;controls_AC_nfe_est=7;controls_AN_nfe_est=70;controls_AF_nfe_est=1.00000e-01;controls_nhomalt_nfe_est=0;non_topmed_AC_asj_female=610;non_topmed_AN_asj_female=4850;non_topmed_AF_asj_female=1.25773e-01;non_topmed_nhomalt_asj_female=44;non_cancer_AC_nfe_swe=3080;non_cancer_AN_nfe_swe=25284;non_cancer_AF_nfe_swe=1.21816e-01;non_cancer_nhomalt_nfe_swe=164;non_cancer_AC=17362;non_cancer_AN=236468;non_cancer_AF=7.34222e-02;non_cancer_nhomalt=912;non_topmed_AC_oth=435;non_topmed_AN_oth=6046;non_topmed_AF_oth=7.19484e-02;non_topmed_nhomalt_oth=24;non_topmed_AC_fin_female=1378;non_topmed_AN_fin_female=10334;non_topmed_AF_fin_female=1.33346e-01;non_topmed_nhomalt_fin_female=87;non_cancer_AC_fin_female=1375;non_cancer_AN_fin_female=10324;non_cancer_AF_fin_female=1.33185e-01;non_cancer_nhomalt_fin_female=87;AC_oth=444;AN_oth=6118;AF_oth=7.25727e-02;nhomalt_oth=25;non_neuro_AC_nfe_male=5257;non_neuro_AN_nfe_male=49676;non_neuro_AF_nfe_male=1.05826e-01;non_neuro_nhomalt_nfe_male=274;controls_AC_female=3523;controls_AN_female=51246;controls_AF_female=6.87468e-02;controls_nhomalt_female=183;non_cancer_AC_fin=2878;non_cancer_AN_fin=21564;non_cancer_AF_fin=1.33463e-01;non_cancer_nhomalt_fin=192;non_topmed_AC_fin=2881;non_topmed_AN_fin=21578;non_topmed_AF_fin=1.33516e-01;non_topmed_nhomalt_fin=192;non_cancer_AC_eas_oea=0;non_cancer_AN_eas_oea=13794;non_cancer_AF_eas_oea=0.00000e+00;non_cancer_nhomalt_eas_oea=0;non_topmed_AC_nfe_female=5347;non_topmed_AN_nfe_female=48694;non_topmed_AF_nfe_female=1.09808e-01;non_topmed_nhomalt_nfe_female=287;non_cancer_AC_sas_male=390;non_cancer_AN_sas_male=23026;non_cancer_AF_sas_male=1.69374e-02;non_cancer_nhomalt_sas_male=5;controls_AC_asj_male=151;controls_AN_asj_male=1106;controls_AF_asj_male=1.36528e-01;controls_nhomalt_asj_male=5;non_cancer_AC_raw=17454;non_cancer_AN_raw=236952;non_cancer_AF_raw=7.36605e-02;non_cancer_nhomalt_raw=920;non_cancer_AC_eas_male=0;non_cancer_AN_eas_male=8744;non_cancer_AF_eas_male=0.00000e+00;non_cancer_nhomalt_eas_male=0;non_topmed_AC_asj_male=679;non_topmed_AN_asj_male=5136;non_topmed_AF_asj_male=1.32204e-01;non_topmed_nhomalt_asj_male=41;non_neuro_AC_oth=326;non_neuro_AN_oth=4856;non_neuro_AF_oth=6.71334e-02;non_neuro_nhomalt_oth=16;AC_male=10108;AN_male=135678;AF_male=7.44999e-02;nhomalt_male=525;controls_AC_fin_female=842;controls_AN_fin_female=6436;controls_AF_fin_female=1.30827e-01;controls_nhomalt_fin_female=58;controls_AC_nfe_bgr=47;controls_AN_nfe_bgr=678;controls_AF_nfe_bgr=6.93215e-02;controls_nhomalt_nfe_bgr=5;controls_AC_asj_female=148;controls_AN_asj_female=1214;controls_AF_asj_female=1.21911e-01;controls_nhomalt_asj_female=8;AC_amr_male=444;AN_amr_male=14314;AF_amr_male=3.10186e-02;nhomalt_amr_male=5;AC_amr_female=570;AN_amr_female=20266;AF_amr_female=2.81259e-02;nhomalt_amr_female=5;non_topmed_AC_sas_male=391;non_topmed_AN_sas_male=23066;non_topmed_AF_sas_male=1.69514e-02;non_topmed_nhomalt_sas_male=5;AC_oth_male=230;AN_oth_male=3200;AF_oth_male=7.18750e-02;nhomalt_oth_male=14;non_cancer_AC_sas=488;non_cancer_AN_sas=30520;non_cancer_AF_sas=1.59895e-02;non_cancer_nhomalt_sas=5;non_neuro_AC_nfe_seu=722;non_neuro_AN_nfe_seu=10930;non_neuro_AF_nfe_seu=6.60567e-02;non_neuro_nhomalt_nfe_seu=27;non_cancer_AC_eas_kor=0;non_cancer_AN_eas_kor=3772;non_cancer_AF_eas_kor=0.00000e+00;non_cancer_nhomalt_eas_kor=0;non_topmed_AC_afr_female=138;non_topmed_AN_afr_female=7294;non_topmed_AF_afr_female=1.89197e-02;non_topmed_nhomalt_afr_female=0;controls_AC_sas_male=194;controls_AN_sas_male=11472;controls_AF_sas_male=1.69107e-02;controls_nhomalt_sas_male=4;non_topmed_AC_sas_female=98;non_topmed_AN_sas_female=7544;non_topmed_AF_sas_female=1.29905e-02;non_topmed_nhomalt_sas_female=0;non_topmed_AC_afr=216;non_topmed_AN_afr=11980;non_topmed_AF_afr=1.80301e-02;non_topmed_nhomalt_afr=1;controls_AC=7669;controls_AN=109316;controls_AF=7.01544e-02;controls_nhomalt=395;non_neuro_AC_oth_female=156;non_neuro_AN_oth_female=2384;non_neuro_AF_oth_female=6.54362e-02;non_neuro_nhomalt_oth_female=7;non_topmed_faf95_amr=2.78769e-02;non_topmed_faf99_amr=2.78761e-02;faf95_afr=1.74470e-02;faf99_afr=1.74462e-02;faf95_sas=1.48048e-02;faf99_sas=1.48054e-02;controls_faf95_afr=1.31569e-02;controls_faf99_afr=1.31561e-02;faf95_amr=2.78245e-02;faf99_amr=2.78245e-02;non_neuro_faf95_sas=1.48086e-02;non_neuro_faf99_sas=1.48091e-02;faf95_eas=1.89700e-05;faf99_eas=1.87100e-05;faf95=7.33687e-02;faf99=7.33685e-02;non_neuro_faf95_afr=1.73698e-02;non_neuro_faf99_afr=1.73699e-02;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=2.62377e-02;non_neuro_faf99_amr=2.62373e-02;non_topmed_faf95_sas=1.48048e-02;non_topmed_faf99_sas=1.48054e-02;controls_faf95_nfe=1.06054e-01;controls_faf99_nfe=1.06054e-01;non_cancer_faf95_afr=1.71776e-02;non_cancer_faf99_afr=1.71775e-02;non_cancer_faf95_amr=2.74972e-02;non_cancer_faf99_amr=2.74971e-02;non_topmed_faf95=7.41745e-02;non_topmed_faf99=7.41745e-02;non_neuro_faf95_nfe=1.05818e-01;non_neuro_faf99_nfe=1.05818e-01;non_neuro_faf95=6.95677e-02;non_neuro_faf99=6.95678e-02;non_topmed_faf95_nfe=1.06372e-01;non_topmed_faf99_nfe=1.06372e-01;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=1.47398e-02;controls_faf99_sas=1.47392e-02;faf95_nfe=1.05955e-01;faf99_nfe=1.05954e-01;non_topmed_faf95_eas=1.89700e-05;non_topmed_faf99_eas=1.87200e-05;controls_faf95_amr=2.57616e-02;controls_faf99_amr=2.57616e-02;non_neuro_faf95_eas=2.56000e-05;non_neuro_faf99_eas=2.61900e-05;non_cancer_faf95_nfe=1.06459e-01;non_cancer_faf99_nfe=1.06460e-01;non_cancer_faf95=7.25077e-02;non_cancer_faf99=7.25074e-02;non_cancer_faf95_sas=1.48178e-02;non_cancer_faf99_sas=1.48178e-02;non_topmed_faf95_afr=1.60601e-02;non_topmed_faf99_afr=1.60602e-02;controls_faf95=6.88418e-02;controls_faf99=6.88419e-02;popmax=nfe;AC_popmax=12203;AN_popmax=113462;AF_popmax=1.07551e-01;nhomalt_popmax=646;age_hist_het_bin_freq=538|568|947|1020|1303|1317|1252|1208|802|575;age_hist_het_n_smaller=340;age_hist_het_n_larger=336;age_hist_hom_bin_freq=24|28|31|65|67|77|76|64|53|34;age_hist_hom_n_smaller=14;age_hist_hom_n_larger=17;non_topmed_popmax=nfe;non_topmed_AC_popmax=12028;non_topmed_AN_popmax=111384;non_topmed_AF_popmax=1.07987e-01;non_topmed_nhomalt_popmax=637;non_neuro_popmax=nfe;non_neuro_AC_popmax=9628;non_neuro_AN_popmax=89466;non_neuro_AF_popmax=1.07616e-01;non_neuro_nhomalt_popmax=515;non_cancer_popmax=nfe;non_cancer_AC_popmax=11079;non_cancer_AN_popmax=102446;non_cancer_AF_popmax=1.08145e-01;non_cancer_nhomalt_popmax=597;controls_popmax=nfe;controls_AC_popmax=4646;controls_AN_popmax=42756;controls_AF_popmax=1.08663e-01;controls_nhomalt_popmax=249;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000292303.4:p.Ser185IlefsTer32|697-728|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000343985.4:p.Ser185IlefsTer32|908-939|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000404881.1:p.Ser185IlefsTer32|784-815|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC||SINGLE_EXON|GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-783&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2067_392-2036delCTGGAAATTCTTCCAGAATTGATACTGACTGT|||||||rs562091107&COSM1423390|1||-1||deletion|1|Clone_based_vega_gene||YES|||||||||||||-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||||| -3 46415066 rs146972949 C T 120238.89 PASS AC=34;AN=250848;AF=1.35540e-04;rf_tp_probability=5.71787e-01;FS=0.00000e+00;InbreedingCoeff=2.70000e-02;MQ=5.96200e+01;MQRankSum=4.44000e-01;QD=1.41100e+01;ReadPosRankSum=6.86000e-01;SOR=6.72000e-01;BaseQRankSum=1.19000e+00;ClippingRankSum=5.40000e-02;DP=7944597;VQSLOD=4.98000e+00;VQSR_culprit=FS;segdup;variant_type=snv;allele_type=snv;n_alt_alleles=1;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|0|33;gq_hist_all_bin_freq=75|33|37|87|171|158|463|783|639|1574|2076|1396|5239|1099|4118|1503|4855|520|4327|96594;dp_hist_alt_bin_freq=0|0|0|1|0|1|1|0|1|0|2|0|0|0|1|1|1|2|3|1;dp_hist_alt_n_larger=18;dp_hist_all_bin_freq=27|162|825|2720|6977|7997|12060|37575|33207|13569|4666|2275|1179|781|457|305|215|140|119|89;dp_hist_all_n_larger=403;ab_hist_alt_bin_freq=0|0|0|0|0|0|1|1|6|10|12|1|1|0|0|0|0|0|0|0;AC_nfe_seu=0;AN_nfe_seu=11474;AF_nfe_seu=0.00000e+00;nhomalt_nfe_seu=0;controls_AC_afr_male=2;controls_AN_afr_male=2924;controls_AF_afr_male=6.83995e-04;controls_nhomalt_afr_male=0;non_neuro_AC_eas_kor=0;non_neuro_AN_eas_kor=3808;non_neuro_AF_eas_kor=0.00000e+00;non_neuro_nhomalt_eas_kor=0;non_topmed_AC_amr=3;non_topmed_AN_amr=34382;non_topmed_AF_amr=8.72550e-05;non_topmed_nhomalt_amr=0;non_cancer_AC_asj_female=0;non_cancer_AN_asj_female=4572;non_cancer_AF_asj_female=0.00000e+00;non_cancer_nhomalt_asj_female=0;AC_raw=34;AN_raw=251494;AF_raw=1.35192e-04;nhomalt_raw=1;AC_fin_female=0;AN_fin_female=10338;AF_fin_female=0.00000e+00;nhomalt_fin_female=0;non_cancer_AC_oth_female=0;non_cancer_AN_oth_female=2676;non_cancer_AF_oth_female=0.00000e+00;non_cancer_nhomalt_oth_female=0;AC_nfe_bgr=0;AN_nfe_bgr=2668;AF_nfe_bgr=0.00000e+00;nhomalt_nfe_bgr=0;non_neuro_AC_asj_female=0;non_neuro_AN_asj_female=3068;non_neuro_AF_asj_female=0.00000e+00;non_neuro_nhomalt_asj_female=0;AC_sas_male=0;AN_sas_male=23036;AF_sas_male=0.00000e+00;nhomalt_sas_male=0;non_neuro_AC_afr_male=10;non_neuro_AN_afr_male=6164;non_neuro_AF_afr_male=1.62232e-03;non_neuro_nhomalt_afr_male=0;AC_afr_male=10;AN_afr_male=6186;AF_afr_male=1.61655e-03;nhomalt_afr_male=0;AC_afr=23;AN_afr=16252;AF_afr=1.41521e-03;nhomalt_afr=0;controls_AC_nfe_swe=2;controls_AN_nfe_swe=12802;controls_AF_nfe_swe=1.56226e-04;controls_nhomalt_nfe_swe=1;non_neuro_AC_afr_female=13;non_neuro_AN_afr_female=10050;non_neuro_AF_afr_female=1.29353e-03;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=3;non_topmed_AN_amr_female=20150;non_topmed_AF_amr_female=1.48883e-04;non_topmed_nhomalt_amr_female=0;non_cancer_AC_female=18;non_cancer_AN_female=107406;non_cancer_AF_female=1.67588e-04;non_cancer_nhomalt_female=1;non_cancer_AC_nfe_onf=2;non_cancer_AN_nfe_onf=24546;non_cancer_AF_nfe_onf=8.14797e-05;non_cancer_nhomalt_nfe_onf=0;non_cancer_AC_male=13;non_cancer_AN_male=128906;non_cancer_AF_male=1.00849e-04;non_cancer_nhomalt_male=0;non_topmed_AC_oth_female=0;non_topmed_AN_oth_female=2872;non_topmed_AF_oth_female=0.00000e+00;non_topmed_nhomalt_oth_female=0;AC_eas_female=0;AN_eas_female=9324;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;non_cancer_AC_sas_female=0;non_cancer_AN_sas_female=7480;non_cancer_AF_sas_female=0.00000e+00;non_cancer_nhomalt_sas_female=0;AC_afr_female=13;AN_afr_female=10066;AF_afr_female=1.29148e-03;nhomalt_afr_female=0;AC_sas=0;AN_sas=30566;AF_sas=0.00000e+00;nhomalt_sas=0;non_neuro_AC_female=20;non_neuro_AN_female=95468;non_neuro_AF_female=2.09494e-04;non_neuro_nhomalt_female=1;controls_AC_afr=9;controls_AN_afr=7164;controls_AF_afr=1.25628e-03;controls_nhomalt_afr=0;non_neuro_AC_eas_jpn=0;non_neuro_AN_eas_jpn=150;non_neuro_AF_eas_jpn=0.00000e+00;non_neuro_nhomalt_eas_jpn=0;AC_nfe_onf=2;AN_nfe_onf=30878;AF_nfe_onf=6.47710e-05;nhomalt_nfe_onf=0;non_cancer_AC_amr_male=0;non_cancer_AN_amr_male=14142;non_cancer_AF_amr_male=0.00000e+00;non_cancer_nhomalt_amr_male=0;controls_AC_fin_male=0;controls_AN_fin_male=6914;controls_AF_fin_male=0.00000e+00;controls_nhomalt_fin_male=0;non_neuro_AC_nfe_nwe=3;non_neuro_AN_nfe_nwe=35264;non_neuro_AF_nfe_nwe=8.50726e-05;non_neuro_nhomalt_nfe_nwe=0;AC_fin_male=0;AN_fin_male=11252;AF_fin_male=0.00000e+00;nhomalt_fin_male=0;AC_nfe_female=4;AN_nfe_female=49998;AF_nfe_female=8.00032e-05;nhomalt_nfe_female=1;AC_amr=3;AN_amr=34516;AF_amr=8.69162e-05;nhomalt_amr=0;non_topmed_AC_nfe_male=4;non_topmed_AN_nfe_male=62676;non_topmed_AF_nfe_male=6.38203e-05;non_topmed_nhomalt_nfe_male=0;non_neuro_AC_sas=0;non_neuro_AN_sas=30558;non_neuro_AF_sas=0.00000e+00;non_neuro_nhomalt_sas=0;non_cancer_AC_fin_male=0;non_cancer_AN_fin_male=11248;non_cancer_AF_fin_male=0.00000e+00;non_cancer_nhomalt_fin_male=0;non_cancer_AC_nfe_seu=0;non_cancer_AN_nfe_seu=10582;non_cancer_AF_nfe_seu=0.00000e+00;non_cancer_nhomalt_nfe_seu=0;AC_eas=0;AN_eas=18382;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=1;non_neuro_AC_nfe_female=4;non_neuro_AN_nfe_female=39730;non_neuro_AF_nfe_female=1.00680e-04;non_neuro_nhomalt_nfe_female=1;non_neuro_AC_afr=23;non_neuro_AN_afr=16214;non_neuro_AF_afr=1.41853e-03;non_neuro_nhomalt_afr=0;controls_AC_raw=14;controls_AN_raw=109408;controls_AF_raw=1.27961e-04;controls_nhomalt_raw=1;non_cancer_AC_eas=0;non_cancer_AN_eas=17682;non_cancer_AF_eas=0.00000e+00;non_cancer_nhomalt_eas=0;non_cancer_AC_amr_female=3;non_cancer_AN_amr_female=20042;non_cancer_AF_amr_female=1.49686e-04;non_cancer_nhomalt_amr_female=0;non_neuro_AC_nfe_swe=2;non_neuro_AN_nfe_swe=14768;non_neuro_AF_nfe_swe=1.35428e-04;non_neuro_nhomalt_nfe_swe=1;controls_AC_male=3;controls_AN_male=58020;controls_AF_male=5.17063e-05;controls_nhomalt_male=0;non_topmed_AC_male=13;non_topmed_AN_male=133200;non_topmed_AF_male=9.75976e-05;non_topmed_nhomalt_male=0;controls_AC_eas_jpn=0;controls_AN_eas_jpn=114;controls_AF_eas_jpn=0.00000e+00;controls_nhomalt_eas_jpn=0;controls_AC_nfe_female=2;controls_AN_nfe_female=19108;controls_AF_nfe_female=1.04668e-04;controls_nhomalt_nfe_female=1;non_neuro_AC_amr=3;non_neuro_AN_amr=30450;non_neuro_AF_amr=9.85222e-05;non_neuro_nhomalt_amr=0;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=6840;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=0;AN_asj_male=5140;AF_asj_male=0.00000e+00;nhomalt_asj_male=0;controls_AC_nfe_male=1;controls_AN_nfe_male=23584;controls_AF_nfe_male=4.24016e-05;controls_nhomalt_nfe_male=0;non_neuro_AC_fin=0;non_neuro_AN_fin=16722;non_neuro_AF_fin=0.00000e+00;non_neuro_nhomalt_fin=0;non_topmed_AC_sas=0;non_topmed_AN_sas=30566;non_topmed_AF_sas=0.00000e+00;non_topmed_nhomalt_sas=0;non_cancer_AC_nfe_female=4;non_cancer_AN_nfe_female=44140;non_cancer_AF_nfe_female=9.06208e-05;non_cancer_nhomalt_nfe_female=1;AC_oth_female=0;AN_oth_female=2922;AF_oth_female=0.00000e+00;nhomalt_oth_female=0;non_cancer_AC_asj=0;non_cancer_AN_asj=9508;non_cancer_AF_asj=0.00000e+00;non_cancer_nhomalt_asj=0;AC_nfe_swe=2;AN_nfe_swe=26120;AF_nfe_swe=7.65697e-05;nhomalt_nfe_swe=1;controls_AC_nfe=3;controls_AN_nfe=42692;controls_AF_nfe=7.02708e-05;controls_nhomalt_nfe=1;controls_AC_oth_female=0;controls_AN_oth_female=986;controls_AF_oth_female=0.00000e+00;controls_nhomalt_oth_female=0;controls_AC_asj=0;controls_AN_asj=2302;controls_AF_asj=0.00000e+00;controls_nhomalt_asj=0;non_neuro_AC_amr_male=0;non_neuro_AN_amr_male=12228;non_neuro_AF_amr_male=0.00000e+00;non_neuro_nhomalt_amr_male=0;controls_AC_nfe_nwe=0;controls_AN_nfe_nwe=14410;controls_AF_nfe_nwe=0.00000e+00;controls_nhomalt_nfe_nwe=0;AC_nfe_nwe=4;AN_nfe_nwe=42036;AF_nfe_nwe=9.51565e-05;nhomalt_nfe_nwe=0;controls_AC_nfe_seu=0;controls_AN_nfe_seu=4758;controls_AF_nfe_seu=0.00000e+00;controls_nhomalt_nfe_seu=0;controls_AC_sas_female=0;controls_AN_sas_female=4208;controls_AF_sas_female=0.00000e+00;controls_nhomalt_sas_female=0;non_neuro_AC_amr_female=3;non_neuro_AN_amr_female=18222;non_neuro_AF_amr_female=1.64636e-04;non_neuro_nhomalt_amr_female=0;non_cancer_AC_eas_jpn=0;non_cancer_AN_eas_jpn=124;non_cancer_AF_eas_jpn=0.00000e+00;non_cancer_nhomalt_eas_jpn=0;non_neuro_AC_nfe_onf=2;non_neuro_AN_nfe_onf=27730;non_neuro_AF_nfe_onf=7.21241e-05;non_neuro_nhomalt_nfe_onf=0;non_topmed_AC_eas_male=0;non_topmed_AN_eas_male=9054;non_topmed_AF_eas_male=0.00000e+00;non_topmed_nhomalt_eas_male=0;AC_eas_jpn=0;AN_eas_jpn=152;AF_eas_jpn=0.00000e+00;nhomalt_eas_jpn=0;non_cancer_AC_afr_male=9;non_cancer_AN_afr_male=5672;non_cancer_AF_afr_male=1.58674e-03;non_cancer_nhomalt_afr_male=0;non_cancer_AC_afr=20;non_cancer_AN_afr=14898;non_cancer_AF_afr=1.34246e-03;non_cancer_nhomalt_afr=0;controls_AC_amr_female=2;controls_AN_amr_female=10196;controls_AF_amr_female=1.96155e-04;controls_nhomalt_amr_female=0;non_neuro_AC_fin_male=0;non_neuro_AN_fin_male=9078;non_neuro_AF_fin_male=0.00000e+00;non_neuro_nhomalt_fin_male=0;AC_female=20;AN_female=115280;AF_female=1.73491e-04;nhomalt_female=1;non_neuro_AC_nfe_bgr=0;non_neuro_AN_nfe_bgr=450;non_neuro_AF_nfe_bgr=0.00000e+00;non_neuro_nhomalt_nfe_bgr=0;non_neuro_AC_oth_male=0;non_neuro_AN_oth_male=2460;non_neuro_AF_oth_male=0.00000e+00;non_neuro_nhomalt_oth_male=0;non_topmed_AC_nfe_est=0;non_topmed_AN_nfe_est=238;non_topmed_AF_nfe_est=0.00000e+00;non_topmed_nhomalt_nfe_est=0;non_topmed_AC_nfe_nwe=4;non_topmed_AN_nfe_nwe=40918;non_topmed_AF_nfe_nwe=9.77565e-05;non_topmed_nhomalt_nfe_nwe=0;non_topmed_AC_amr_male=0;non_topmed_AN_amr_male=14232;non_topmed_AF_amr_male=0.00000e+00;non_topmed_nhomalt_amr_male=0;non_cancer_AC_amr=3;non_cancer_AN_amr=34184;non_cancer_AF_amr=8.77604e-05;non_cancer_nhomalt_amr=0;non_topmed_AC_nfe_swe=2;non_topmed_AN_nfe_swe=26058;non_topmed_AF_nfe_swe=7.67519e-05;non_topmed_nhomalt_nfe_swe=1;non_topmed_AC_nfe_onf=2;non_topmed_AN_nfe_onf=30078;non_topmed_AF_nfe_onf=6.64938e-05;non_topmed_nhomalt_nfe_onf=0;controls_AC_eas_kor=0;controls_AN_eas_kor=1882;controls_AF_eas_kor=0.00000e+00;controls_nhomalt_eas_kor=0;non_topmed_AC_eas_oea=0;non_topmed_AN_eas_oea=14416;non_topmed_AF_eas_oea=0.00000e+00;non_topmed_nhomalt_eas_oea=0;controls_AC_eas_male=0;controls_AN_eas_male=4254;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=0;controls_AN_oth_male=928;controls_AF_oth_male=0.00000e+00;controls_nhomalt_oth_male=0;non_topmed_AC=28;non_topmed_AN=244232;non_topmed_AF=1.14645e-04;non_topmed_nhomalt=1;controls_AC_fin=0;controls_AN_fin=13384;controls_AF_fin=0.00000e+00;controls_nhomalt_fin=0;AC_eas_kor=0;AN_eas_kor=3810;AF_eas_kor=0.00000e+00;nhomalt_eas_kor=0;non_neuro_AC_nfe=7;non_neuro_AN_nfe=89354;non_neuro_AF_nfe=7.83401e-05;non_neuro_nhomalt_nfe=1;non_neuro_AC_fin_female=0;non_neuro_AN_fin_female=7644;non_neuro_AF_fin_female=0.00000e+00;non_neuro_nhomalt_fin_female=0;non_cancer_AC_nfe_male=4;non_cancer_AN_nfe_male=58262;non_cancer_AF_nfe_male=6.86554e-05;non_cancer_nhomalt_nfe_male=0;controls_AC_eas_oea=0;controls_AN_eas_oea=7044;controls_AF_eas_oea=0.00000e+00;controls_nhomalt_eas_oea=0;non_topmed_AC_nfe_seu=0;non_topmed_AN_nfe_seu=11378;non_topmed_AF_nfe_seu=0.00000e+00;non_topmed_nhomalt_nfe_seu=0;controls_AC_eas_female=0;controls_AN_eas_female=4786;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=0;non_topmed_AN_asj=9934;non_topmed_AF_asj=0.00000e+00;non_topmed_nhomalt_asj=0;controls_AC_nfe_onf=1;controls_AN_nfe_onf=9974;controls_AF_nfe_onf=1.00261e-04;controls_nhomalt_nfe_onf=0;non_neuro_AC=33;non_neuro_AN=207724;non_neuro_AF=1.58865e-04;non_neuro_nhomalt=1;AC_eas_oea=0;AN_eas_oea=14420;AF_eas_oea=0.00000e+00;nhomalt_eas_oea=0;non_topmed_AC_nfe=8;non_topmed_AN_nfe=111330;non_topmed_AF_nfe=7.18584e-05;non_topmed_nhomalt_nfe=1;non_cancer_AC_oth=0;non_cancer_AN_oth=5588;non_cancer_AF_oth=0.00000e+00;non_cancer_nhomalt_oth=0;non_topmed_AC_raw=28;non_topmed_AN_raw=244876;non_topmed_AF_raw=1.14344e-04;non_topmed_nhomalt_raw=1;non_neuro_AC_nfe_est=0;non_neuro_AN_nfe_est=216;non_neuro_AF_nfe_est=0.00000e+00;non_neuro_nhomalt_nfe_est=0;non_topmed_AC_oth_male=0;non_topmed_AN_oth_male=3160;non_topmed_AF_oth_male=0.00000e+00;non_topmed_nhomalt_oth_male=0;non_cancer_AC_oth_male=0;non_cancer_AN_oth_male=2912;non_cancer_AF_oth_male=0.00000e+00;non_cancer_nhomalt_oth_male=0;AC_nfe_est=0;AN_nfe_est=242;AF_nfe_est=0.00000e+00;nhomalt_nfe_est=0;non_cancer_AC_afr_female=11;non_cancer_AN_afr_female=9226;non_cancer_AF_afr_female=1.19228e-03;non_cancer_nhomalt_afr_female=0;non_topmed_AC_afr_male=9;non_topmed_AN_afr_male=4686;non_topmed_AF_afr_male=1.92061e-03;non_topmed_nhomalt_afr_male=0;AC_eas_male=0;AN_eas_male=9058;AF_eas_male=0.00000e+00;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=9040;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=0;non_neuro_AN_eas_male=6566;non_neuro_AF_eas_male=0.00000e+00;non_neuro_nhomalt_eas_male=0;non_cancer_AC_nfe_nwe=4;non_cancer_AN_nfe_nwe=39316;non_cancer_AF_nfe_nwe=1.01740e-04;non_cancer_nhomalt_nfe_nwe=0;controls_AC_sas=0;controls_AN_sas=15664;controls_AF_sas=0.00000e+00;controls_nhomalt_sas=0;non_neuro_AC_sas_male=0;non_neuro_AN_sas_male=23030;non_neuro_AF_sas_male=0.00000e+00;non_neuro_nhomalt_sas_male=0;non_neuro_AC_asj_male=0;non_neuro_AN_asj_male=3106;non_neuro_AF_asj_male=0.00000e+00;non_neuro_nhomalt_asj_male=0;non_cancer_AC_nfe_bgr=0;non_cancer_AN_nfe_bgr=2524;non_cancer_AF_nfe_bgr=0.00000e+00;non_cancer_nhomalt_nfe_bgr=0;controls_AC_oth=0;controls_AN_oth=1914;controls_AF_oth=0.00000e+00;controls_nhomalt_oth=0;non_cancer_AC_eas_female=0;non_cancer_AN_eas_female=8944;non_cancer_AF_eas_female=0.00000e+00;non_cancer_nhomalt_eas_female=0;AC_nfe=8;AN_nfe=113418;AF_nfe=7.05355e-05;nhomalt_nfe=1;non_topmed_AC_female=15;non_topmed_AN_female=111032;non_topmed_AF_female=1.35096e-04;non_topmed_nhomalt_female=1;non_neuro_AC_asj=0;non_neuro_AN_asj=6174;non_neuro_AF_asj=0.00000e+00;non_neuro_nhomalt_asj=0;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=9324;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=33;non_neuro_AN_raw=208134;non_neuro_AF_raw=1.58552e-04;non_neuro_nhomalt_raw=1;non_topmed_AC_eas=0;non_topmed_AN_eas=18378;non_topmed_AF_eas=0.00000e+00;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=0;non_topmed_AN_fin_male=11252;non_topmed_AF_fin_male=0.00000e+00;non_topmed_nhomalt_fin_male=0;non_cancer_AC_asj_male=0;non_cancer_AN_asj_male=4936;non_cancer_AF_asj_male=0.00000e+00;non_cancer_nhomalt_asj_male=0;AC_fin=0;AN_fin=21590;AF_fin=0.00000e+00;nhomalt_fin=0;AC_nfe_male=4;AN_nfe_male=63420;AF_nfe_male=6.30716e-05;nhomalt_nfe_male=0;non_topmed_AC_eas_kor=0;non_topmed_AN_eas_kor=3810;non_topmed_AF_eas_kor=0.00000e+00;non_topmed_nhomalt_eas_kor=0;controls_AC_amr_male=0;controls_AN_amr_male=6866;controls_AF_amr_male=0.00000e+00;controls_nhomalt_amr_male=0;non_neuro_AC_eas_oea=0;non_neuro_AN_eas_oea=9448;non_neuro_AF_eas_oea=0.00000e+00;non_neuro_nhomalt_eas_oea=0;AC_sas_female=0;AN_sas_female=7530;AF_sas_female=0.00000e+00;nhomalt_sas_female=0;controls_AC_afr_female=7;controls_AN_afr_female=4240;controls_AF_afr_female=1.65094e-03;controls_nhomalt_afr_female=0;controls_AC_amr=2;controls_AN_amr=17062;controls_AF_amr=1.17220e-04;controls_nhomalt_amr=0;non_topmed_AC_eas_jpn=0;non_topmed_AN_eas_jpn=152;non_topmed_AF_eas_jpn=0.00000e+00;non_topmed_nhomalt_eas_jpn=0;AC_asj_female=0;AN_asj_female=4876;AF_asj_female=0.00000e+00;nhomalt_asj_female=0;non_topmed_AC_nfe_bgr=0;non_topmed_AN_nfe_bgr=2660;non_topmed_AF_nfe_bgr=0.00000e+00;non_topmed_nhomalt_nfe_bgr=0;non_cancer_AC_nfe_est=0;non_cancer_AN_nfe_est=158;non_cancer_AF_nfe_est=0.00000e+00;non_cancer_nhomalt_nfe_est=0;non_neuro_AC_eas=0;non_neuro_AN_eas=13406;non_neuro_AF_eas=0.00000e+00;non_neuro_nhomalt_eas=0;non_cancer_AC_nfe=8;non_cancer_AN_nfe=102402;non_cancer_AF_nfe=7.81235e-05;non_cancer_nhomalt_nfe=1;non_neuro_AC_male=13;non_neuro_AN_male=112256;non_neuro_AF_male=1.15807e-04;non_neuro_nhomalt_male=0;non_neuro_AC_sas_female=0;non_neuro_AN_sas_female=7528;non_neuro_AF_sas_female=0.00000e+00;non_neuro_nhomalt_sas_female=0;AC_asj=0;AN_asj=10016;AF_asj=0.00000e+00;nhomalt_asj=0;controls_AC_nfe_est=0;controls_AN_nfe_est=70;controls_AF_nfe_est=0.00000e+00;controls_nhomalt_nfe_est=0;non_topmed_AC_asj_female=0;non_topmed_AN_asj_female=4830;non_topmed_AF_asj_female=0.00000e+00;non_topmed_nhomalt_asj_female=0;non_cancer_AC_nfe_swe=2;non_cancer_AN_nfe_swe=25276;non_cancer_AF_nfe_swe=7.91264e-05;non_cancer_nhomalt_nfe_swe=1;non_cancer_AC=31;non_cancer_AN=236312;non_cancer_AF=1.31183e-04;non_cancer_nhomalt=1;non_topmed_AC_oth=0;non_topmed_AN_oth=6032;non_topmed_AF_oth=0.00000e+00;non_topmed_nhomalt_oth=0;non_topmed_AC_fin_female=0;non_topmed_AN_fin_female=10336;non_topmed_AF_fin_female=0.00000e+00;non_topmed_nhomalt_fin_female=0;non_cancer_AC_fin_female=0;non_cancer_AN_fin_female=10326;non_cancer_AF_fin_female=0.00000e+00;non_cancer_nhomalt_fin_female=0;AC_oth=0;AN_oth=6108;AF_oth=0.00000e+00;nhomalt_oth=0;non_neuro_AC_nfe_male=3;non_neuro_AN_nfe_male=49624;non_neuro_AF_nfe_male=6.04546e-05;non_neuro_nhomalt_nfe_male=0;controls_AC_female=11;controls_AN_female=51202;controls_AF_female=2.14835e-04;controls_nhomalt_female=1;non_cancer_AC_fin=0;non_cancer_AN_fin=21574;non_cancer_AF_fin=0.00000e+00;non_cancer_nhomalt_fin=0;non_topmed_AC_fin=0;non_topmed_AN_fin=21588;non_topmed_AF_fin=0.00000e+00;non_topmed_nhomalt_fin=0;non_cancer_AC_eas_oea=0;non_cancer_AN_eas_oea=13792;non_cancer_AF_eas_oea=0.00000e+00;non_cancer_nhomalt_eas_oea=0;non_topmed_AC_nfe_female=4;non_topmed_AN_nfe_female=48654;non_topmed_AF_nfe_female=8.22132e-05;non_topmed_nhomalt_nfe_female=1;non_cancer_AC_sas_male=0;non_cancer_AN_sas_male=22996;non_cancer_AF_sas_male=0.00000e+00;non_cancer_nhomalt_sas_male=0;controls_AC_asj_male=0;controls_AN_asj_male=1094;controls_AF_asj_male=0.00000e+00;controls_nhomalt_asj_male=0;non_cancer_AC_raw=31;non_cancer_AN_raw=236956;non_cancer_AF_raw=1.30826e-04;non_cancer_nhomalt_raw=1;non_cancer_AC_eas_male=0;non_cancer_AN_eas_male=8738;non_cancer_AF_eas_male=0.00000e+00;non_cancer_nhomalt_eas_male=0;non_topmed_AC_asj_male=0;non_topmed_AN_asj_male=5104;non_topmed_AF_asj_male=0.00000e+00;non_topmed_nhomalt_asj_male=0;non_neuro_AC_oth=0;non_neuro_AN_oth=4846;non_neuro_AF_oth=0.00000e+00;non_neuro_nhomalt_oth=0;AC_male=14;AN_male=135568;AF_male=1.03269e-04;nhomalt_male=0;controls_AC_fin_female=0;controls_AN_fin_female=6470;controls_AF_fin_female=0.00000e+00;controls_nhomalt_fin_female=0;controls_AC_nfe_bgr=0;controls_AN_nfe_bgr=678;controls_AF_nfe_bgr=0.00000e+00;controls_nhomalt_nfe_bgr=0;controls_AC_asj_female=0;controls_AN_asj_female=1208;controls_AF_asj_female=0.00000e+00;controls_nhomalt_asj_female=0;AC_amr_male=0;AN_amr_male=14290;AF_amr_male=0.00000e+00;nhomalt_amr_male=0;AC_amr_female=3;AN_amr_female=20226;AF_amr_female=1.48324e-04;nhomalt_amr_female=0;non_topmed_AC_sas_male=0;non_topmed_AN_sas_male=23036;non_topmed_AF_sas_male=0.00000e+00;non_topmed_nhomalt_sas_male=0;AC_oth_male=0;AN_oth_male=3186;AF_oth_male=0.00000e+00;nhomalt_oth_male=0;non_cancer_AC_sas=0;non_cancer_AN_sas=30476;non_cancer_AF_sas=0.00000e+00;non_cancer_nhomalt_sas=0;non_neuro_AC_nfe_seu=0;non_neuro_AN_nfe_seu=10926;non_neuro_AF_nfe_seu=0.00000e+00;non_neuro_nhomalt_nfe_seu=0;non_cancer_AC_eas_kor=0;non_cancer_AN_eas_kor=3766;non_cancer_AF_eas_kor=0.00000e+00;non_cancer_nhomalt_eas_kor=0;non_topmed_AC_afr_female=8;non_topmed_AN_afr_female=7336;non_topmed_AF_afr_female=1.09051e-03;non_topmed_nhomalt_afr_female=0;controls_AC_sas_male=0;controls_AN_sas_male=11456;controls_AF_sas_male=0.00000e+00;controls_nhomalt_sas_male=0;non_topmed_AC_sas_female=0;non_topmed_AN_sas_female=7530;non_topmed_AF_sas_female=0.00000e+00;non_topmed_nhomalt_sas_female=0;non_topmed_AC_afr=17;non_topmed_AN_afr=12022;non_topmed_AF_afr=1.41407e-03;non_topmed_nhomalt_afr=0;controls_AC=14;controls_AN=109222;controls_AF=1.28179e-04;controls_nhomalt=1;non_neuro_AC_oth_female=0;non_neuro_AN_oth_female=2386;non_neuro_AF_oth_female=0.00000e+00;non_neuro_nhomalt_oth_female=0;non_topmed_faf95_amr=2.31200e-05;non_topmed_faf99_amr=2.34100e-05;faf95_afr=9.66830e-04;faf99_afr=9.67200e-04;faf95_sas=0.00000e+00;faf99_sas=0.00000e+00;controls_faf95_afr=6.54730e-04;controls_faf99_afr=6.54620e-04;faf95_amr=2.30300e-05;faf99_amr=2.33800e-05;non_neuro_faf95_sas=0.00000e+00;non_neuro_faf99_sas=0.00000e+00;faf95_eas=0.00000e+00;faf99_eas=0.00000e+00;faf95=9.94300e-05;faf99=9.89300e-05;non_neuro_faf95_afr=9.69030e-04;non_neuro_faf99_afr=9.69050e-04;non_cancer_faf95_eas=0.00000e+00;non_cancer_faf99_eas=0.00000e+00;non_neuro_faf95_amr=2.61000e-05;non_neuro_faf99_amr=2.62300e-05;non_topmed_faf95_sas=0.00000e+00;non_topmed_faf99_sas=0.00000e+00;controls_faf95_nfe=1.86300e-05;controls_faf99_nfe=1.81600e-05;non_cancer_faf95_afr=8.89330e-04;non_cancer_faf99_afr=8.89190e-04;non_cancer_faf95_amr=2.32600e-05;non_cancer_faf99_amr=2.34400e-05;non_topmed_faf95=8.13900e-05;non_topmed_faf99=8.13100e-05;non_neuro_faf95_nfe=3.64900e-05;non_neuro_faf99_nfe=3.58700e-05;non_neuro_faf95=1.15840e-04;non_neuro_faf99=1.15450e-04;non_topmed_faf95_nfe=3.48400e-05;non_topmed_faf99_nfe=3.52700e-05;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;controls_faf95_sas=0.00000e+00;controls_faf99_sas=0.00000e+00;faf95_nfe=3.42700e-05;faf99_nfe=3.48600e-05;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=2.03600e-05;controls_faf99_amr=2.02400e-05;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_cancer_faf95_nfe=3.85200e-05;non_cancer_faf99_nfe=3.82000e-05;non_cancer_faf95=9.48900e-05;non_cancer_faf99=9.47500e-05;non_cancer_faf95_sas=0.00000e+00;non_cancer_faf99_sas=0.00000e+00;non_topmed_faf95_afr=9.00250e-04;non_topmed_faf99_afr=9.00830e-04;controls_faf95=7.72000e-05;controls_faf99=7.69900e-05;popmax=afr;AC_popmax=23;AN_popmax=16252;AF_popmax=1.41521e-03;nhomalt_popmax=0;age_hist_het_bin_freq=2|0|2|3|5|4|1|3|3|1;age_hist_het_n_smaller=3;age_hist_het_n_larger=0;age_hist_hom_bin_freq=0|0|0|0|0|0|1|0|0|0;age_hist_hom_n_smaller=0;age_hist_hom_n_larger=0;non_topmed_popmax=afr;non_topmed_AC_popmax=17;non_topmed_AN_popmax=12022;non_topmed_AF_popmax=1.41407e-03;non_topmed_nhomalt_popmax=0;non_neuro_popmax=afr;non_neuro_AC_popmax=23;non_neuro_AN_popmax=16214;non_neuro_AF_popmax=1.41853e-03;non_neuro_nhomalt_popmax=0;non_cancer_popmax=afr;non_cancer_AC_popmax=20;non_cancer_AN_popmax=14898;non_cancer_AF_popmax=1.34246e-03;non_cancer_nhomalt_popmax=0;controls_popmax=afr;controls_AC_popmax=9;controls_AN_popmax=7164;controls_AF_popmax=1.25628e-03;controls_nhomalt_popmax=0;vep=T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.673C>T|ENSP00000292303.4:p.Arg225Ter|819|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC|||GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-683&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.673C>T|ENSP00000343985.4:p.Arg225Ter|1030|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC|||GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-683&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|stop_gained|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.673C>T|ENSP00000404881.1:p.Arg225Ter|906|673|225|R/*|Cga/Tga|CM104769&rs146972949&COSM3781819|1||1||SNV|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||HC||SINGLE_EXON|GERP_DIST:708.009800000002&BP_DIST:386&PERCENTILE:0.635505193578848&DIST_FROM_LAST_EXON:-905&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,T|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2158G>A|||||||CM104769&rs146972949&COSM3781819|1||-1||SNV|1|Clone_based_vega_gene||YES|||||||||||||T:0.0004|T:0|T:0.0015|T:0|T:0|T:0|T:0|T:0.0016|T:0|T:0.0001728|T:1.812e-04|T:0.00154|T:0.0001815|T:0|T:0|T:5.999e-05|T:0||0&0&1|1&0&1||||||||| -3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 1947603.90 PASS AC=2427;AN=31348;AF=7.74212e-02;rf_tp_probability=9.53514e-01;FS=0.00000e+00;InbreedingCoeff=6.00000e-03;MQ=6.03900e+01;MQRankSum=4.52000e-01;QD=1.69200e+01;ReadPosRankSum=-2.90000e-02;SOR=6.82000e-01;VQSR_POSITIVE_TRAIN_SITE;BaseQRankSum=3.50000e-01;ClippingRankSum=-2.60000e-02;DP=651449;VQSLOD=8.95000e-01;VQSR_culprit=MQRankSum;segdup;rf_positive_label;rf_label=TP;rf_train;variant_type=indel;allele_type=del;n_alt_alleles=1;pab_max=1.00000e+00;gq_hist_alt_bin_freq=0|2|0|0|1|1|0|0|2|1|1|4|2|8|10|10|6|10|13|2273;gq_hist_all_bin_freq=0|4|2|7|11|13|42|105|122|293|508|378|1311|490|1227|629|1675|339|1590|6962;dp_hist_alt_bin_freq=0|1|7|103|272|429|467|464|288|169|81|42|9|2|5|1|1|0|0|1;dp_hist_alt_n_larger=2;dp_hist_all_bin_freq=0|6|133|855|2413|3283|3682|4026|918|231|85|47|12|5|7|1|1|0|0|1;dp_hist_all_n_larger=2;ab_hist_alt_bin_freq=0|0|3|13|33|112|269|379|528|329|325|143|68|17|3|0|1|3|4|11;AC_nfe_seu=4;AN_nfe_seu=106;AF_nfe_seu=3.77358e-02;nhomalt_nfe_seu=0;controls_AC_afr_male=26;controls_AN_afr_male=1408;controls_AF_afr_male=1.84659e-02;controls_nhomalt_afr_male=0;non_topmed_AC_amr=22;non_topmed_AN_amr=810;non_topmed_AF_amr=2.71605e-02;non_topmed_nhomalt_amr=1;AC_raw=2447;AN_raw=31416;AF_raw=7.78902e-02;nhomalt_raw=103;AC_fin_female=271;AN_fin_female=1838;AF_fin_female=1.47443e-01;nhomalt_fin_female=20;non_neuro_AC_asj_female=5;non_neuro_AN_asj_female=60;non_neuro_AF_asj_female=8.33333e-02;non_neuro_nhomalt_asj_female=0;non_neuro_AC_afr_male=26;non_neuro_AN_afr_male=1608;non_neuro_AF_afr_male=1.61692e-02;non_neuro_nhomalt_afr_male=0;AC_afr_male=101;AN_afr_male=5026;AF_afr_male=2.00955e-02;nhomalt_afr_male=1;AC_afr=168;AN_afr=8706;AF_afr=1.92970e-02;nhomalt_afr=1;non_neuro_AC_afr_female=29;non_neuro_AN_afr_female=1780;non_neuro_AF_afr_female=1.62921e-02;non_neuro_nhomalt_afr_female=0;non_topmed_AC_amr_female=8;non_topmed_AN_amr_female=394;non_topmed_AF_amr_female=2.03046e-02;non_topmed_nhomalt_amr_female=0;non_topmed_AC_oth_female=53;non_topmed_AN_oth_female=546;non_topmed_AF_oth_female=9.70696e-02;non_topmed_nhomalt_oth_female=3;AC_eas_female=0;AN_eas_female=538;AF_eas_female=0.00000e+00;nhomalt_eas_female=0;AC_afr_female=67;AN_afr_female=3680;AF_afr_female=1.82065e-02;nhomalt_afr_female=0;non_neuro_AC_female=807;non_neuro_AN_female=9576;non_neuro_AF_female=8.42732e-02;non_neuro_nhomalt_female=31;controls_AC_afr=45;controls_AN_afr=2574;controls_AF_afr=1.74825e-02;controls_nhomalt_afr=0;AC_nfe_onf=190;AN_nfe_onf=2136;AF_nfe_onf=8.89513e-02;nhomalt_nfe_onf=8;controls_AC_fin_male=74;controls_AN_fin_male=606;controls_AF_fin_male=1.22112e-01;controls_nhomalt_fin_male=6;non_neuro_AC_nfe_nwe=800;non_neuro_AN_nfe_nwe=7682;non_neuro_AF_nfe_nwe=1.04140e-01;non_neuro_nhomalt_nfe_nwe=21;AC_fin_male=207;AN_fin_male=1630;AF_fin_male=1.26994e-01;nhomalt_fin_male=16;AC_nfe_female=730;AN_nfe_female=6792;AF_nfe_female=1.07479e-01;nhomalt_nfe_female=27;AC_amr=23;AN_amr=848;AF_amr=2.71226e-02;nhomalt_amr=1;non_topmed_AC_nfe_male=572;non_topmed_AN_nfe_male=5458;non_topmed_AF_nfe_male=1.04800e-01;non_topmed_nhomalt_nfe_male=23;AC_eas=0;AN_eas=1558;AF_eas=0.00000e+00;nhomalt_eas=0;nhomalt=102;non_neuro_AC_nfe_female=641;non_neuro_AN_nfe_female=5970;non_neuro_AF_nfe_female=1.07370e-01;non_neuro_nhomalt_nfe_female=22;non_neuro_AC_afr=55;non_neuro_AN_afr=3388;non_neuro_AF_afr=1.62338e-02;non_neuro_nhomalt_afr=0;controls_AC_raw=885;controls_AN_raw=10884;controls_AF_raw=8.13120e-02;controls_nhomalt_raw=41;controls_AC_male=464;controls_AN_male=5854;controls_AF_male=7.92620e-02;controls_nhomalt_male=24;non_topmed_AC_male=946;non_topmed_AN_male=13976;non_topmed_AF_male=6.76875e-02;non_topmed_nhomalt_male=43;controls_AC_nfe_female=281;controls_AN_nfe_female=2572;controls_AF_nfe_female=1.09253e-01;controls_nhomalt_nfe_female=9;non_neuro_AC_amr=15;non_neuro_AN_amr=554;non_neuro_AF_amr=2.70758e-02;non_neuro_nhomalt_amr=0;non_neuro_AC_eas_female=0;non_neuro_AN_eas_female=538;non_neuro_AF_eas_female=0.00000e+00;non_neuro_nhomalt_eas_female=0;AC_asj_male=30;AN_asj_male=210;AF_asj_male=1.42857e-01;nhomalt_asj_male=2;controls_AC_nfe_male=332;controls_AN_nfe_male=2932;controls_AF_nfe_male=1.13233e-01;controls_nhomalt_nfe_male=16;non_neuro_AC_fin=163;non_neuro_AN_fin=1160;non_neuro_AF_fin=1.40517e-01;non_neuro_nhomalt_fin=13;AC_oth_female=56;AN_oth_female=562;AF_oth_female=9.96441e-02;nhomalt_oth_female=3;controls_AC_nfe=613;controls_AN_nfe=5504;controls_AF_nfe=1.11374e-01;controls_nhomalt_nfe=25;controls_AC_oth_female=23;controls_AN_oth_female=226;controls_AF_oth_female=1.01770e-01;controls_nhomalt_oth_female=2;controls_AC_asj=3;controls_AN_asj=38;controls_AF_asj=7.89474e-02;controls_nhomalt_asj=0;non_neuro_AC_amr_male=7;non_neuro_AN_amr_male=244;non_neuro_AF_amr_male=2.86885e-02;non_neuro_nhomalt_amr_male=0;controls_AC_nfe_nwe=88;controls_AN_nfe_nwe=922;controls_AF_nfe_nwe=9.54447e-02;controls_nhomalt_nfe_nwe=1;AC_nfe_nwe=891;AN_nfe_nwe=8576;AF_nfe_nwe=1.03895e-01;nhomalt_nfe_nwe=24;controls_AC_nfe_seu=2;controls_AN_nfe_seu=56;controls_AF_nfe_seu=3.57143e-02;controls_nhomalt_nfe_seu=0;non_neuro_AC_amr_female=8;non_neuro_AN_amr_female=310;non_neuro_AF_amr_female=2.58065e-02;non_neuro_nhomalt_amr_female=0;non_neuro_AC_nfe_onf=156;non_neuro_AN_nfe_onf=1722;non_neuro_AF_nfe_onf=9.05923e-02;non_neuro_nhomalt_nfe_onf=6;non_topmed_AC_eas_male=0;non_topmed_AN_eas_male=1000;non_topmed_AF_eas_male=0.00000e+00;non_topmed_nhomalt_eas_male=0;controls_AC_amr_female=3;controls_AN_amr_female=120;controls_AF_amr_female=2.50000e-02;controls_nhomalt_amr_female=0;non_neuro_AC_fin_male=74;non_neuro_AN_fin_male=606;non_neuro_AF_fin_male=1.22112e-01;non_neuro_nhomalt_fin_male=6;AC_female=1138;AN_female=13904;AF_female=8.18470e-02;nhomalt_female=50;non_neuro_AC_oth_male=36;non_neuro_AN_oth_male=368;non_neuro_AF_oth_male=9.78261e-02;non_neuro_nhomalt_oth_male=2;non_topmed_AC_nfe_est=533;non_topmed_AN_nfe_est=4552;non_topmed_AF_nfe_est=1.17091e-01;non_topmed_nhomalt_nfe_est=25;non_topmed_AC_nfe_nwe=521;non_topmed_AN_nfe_nwe=4884;non_topmed_AF_nfe_nwe=1.06675e-01;non_topmed_nhomalt_nfe_nwe=14;non_topmed_AC_amr_male=14;non_topmed_AN_amr_male=416;non_topmed_AF_amr_male=3.36538e-02;non_topmed_nhomalt_amr_male=1;non_topmed_AC_nfe_onf=132;non_topmed_AN_nfe_onf=1514;non_topmed_AF_nfe_onf=8.71863e-02;non_topmed_nhomalt_nfe_onf=7;controls_AC_eas_male=0;controls_AN_eas_male=572;controls_AF_eas_male=0.00000e+00;controls_nhomalt_eas_male=0;controls_AC_oth_male=26;controls_AN_oth_male=196;controls_AF_oth_male=1.32653e-01;controls_nhomalt_oth_male=2;non_topmed_AC=1966;non_topmed_AN=26546;non_topmed_AF=7.40601e-02;non_topmed_nhomalt=89;controls_AC_fin=161;controls_AN_fin=1158;controls_AF_fin=1.39033e-01;controls_nhomalt_fin=12;non_neuro_AC_nfe=1440;non_neuro_AN_nfe=13586;non_neuro_AF_nfe=1.05991e-01;non_neuro_nhomalt_nfe=49;non_neuro_AC_fin_female=89;non_neuro_AN_fin_female=554;non_neuro_AF_fin_female=1.60650e-01;non_neuro_nhomalt_fin_female=7;non_topmed_AC_nfe_seu=4;non_topmed_AN_nfe_seu=106;non_topmed_AF_nfe_seu=3.77358e-02;non_topmed_nhomalt_nfe_seu=0;controls_AC_eas_female=0;controls_AN_eas_female=342;controls_AF_eas_female=0.00000e+00;controls_nhomalt_eas_female=0;non_topmed_AC_asj=15;non_topmed_AN_asj=138;non_topmed_AF_asj=1.08696e-01;non_topmed_nhomalt_asj=0;controls_AC_nfe_onf=46;controls_AN_nfe_onf=440;controls_AF_nfe_onf=1.04545e-01;controls_nhomalt_nfe_onf=2;non_neuro_AC=1774;non_neuro_AN=21224;non_neuro_AF=8.35846e-02;non_neuro_nhomalt=68;non_topmed_AC_nfe=1190;non_topmed_AN_nfe=11056;non_topmed_AF_nfe=1.07634e-01;non_topmed_nhomalt_nfe=46;non_topmed_AC_raw=1983;non_topmed_AN_raw=26608;non_topmed_AF_raw=7.45265e-02;non_topmed_nhomalt_raw=90;non_neuro_AC_nfe_est=482;non_neuro_AN_nfe_est=4128;non_neuro_AF_nfe_est=1.16764e-01;non_neuro_nhomalt_nfe_est=22;non_topmed_AC_oth_male=41;non_topmed_AN_oth_male=464;non_topmed_AF_oth_male=8.83621e-02;non_topmed_nhomalt_oth_male=2;AC_nfe_est=536;AN_nfe_est=4574;AF_nfe_est=1.17184e-01;nhomalt_nfe_est=25;non_topmed_AC_afr_male=100;non_topmed_AN_afr_male=4932;non_topmed_AF_afr_male=2.02758e-02;non_topmed_nhomalt_afr_male=1;AC_eas_male=0;AN_eas_male=1020;AF_eas_male=0.00000e+00;nhomalt_eas_male=0;controls_AC_eas=0;controls_AN_eas=914;controls_AF_eas=0.00000e+00;controls_nhomalt_eas=0;non_neuro_AC_eas_male=0;non_neuro_AN_eas_male=1020;non_neuro_AF_eas_male=0.00000e+00;non_neuro_nhomalt_eas_male=0;non_neuro_AC_asj_male=25;non_neuro_AN_asj_male=186;non_neuro_AF_asj_male=1.34409e-01;non_neuro_nhomalt_asj_male=2;controls_AC_oth=49;controls_AN_oth=422;controls_AF_oth=1.16114e-01;controls_nhomalt_oth=4;AC_nfe=1621;AN_nfe=15392;AF_nfe=1.05314e-01;nhomalt_nfe=57;non_topmed_AC_female=1020;non_topmed_AN_female=12570;non_topmed_AF_female=8.11456e-02;non_topmed_nhomalt_female=46;non_neuro_AC_asj=30;non_neuro_AN_asj=246;non_neuro_AF_asj=1.21951e-01;non_neuro_nhomalt_asj=2;non_topmed_AC_eas_female=0;non_topmed_AN_eas_female=520;non_topmed_AF_eas_female=0.00000e+00;non_topmed_nhomalt_eas_female=0;non_neuro_AC_raw=1791;non_neuro_AN_raw=21272;non_neuro_AF_raw=8.41952e-02;non_neuro_nhomalt_raw=69;non_topmed_AC_eas=0;non_topmed_AN_eas=1520;non_topmed_AF_eas=0.00000e+00;non_topmed_nhomalt_eas=0;non_topmed_AC_fin_male=207;non_topmed_AN_fin_male=1630;non_topmed_AF_fin_male=1.26994e-01;non_topmed_nhomalt_fin_male=16;AC_fin=478;AN_fin=3468;AF_fin=1.37832e-01;nhomalt_fin=36;AC_nfe_male=891;AN_nfe_male=8600;AF_nfe_male=1.03605e-01;nhomalt_nfe_male=30;controls_AC_amr_male=4;controls_AN_amr_male=126;controls_AF_amr_male=3.17460e-02;controls_nhomalt_amr_male=0;controls_AC_afr_female=19;controls_AN_afr_female=1166;controls_AF_afr_female=1.62950e-02;controls_nhomalt_afr_female=0;controls_AC_amr=7;controls_AN_amr=246;controls_AF_amr=2.84553e-02;controls_nhomalt_amr=0;AC_asj_female=5;AN_asj_female=80;AF_asj_female=6.25000e-02;nhomalt_asj_female=0;non_neuro_AC_eas=0;non_neuro_AN_eas=1558;non_neuro_AF_eas=0.00000e+00;non_neuro_nhomalt_eas=0;non_neuro_AC_male=967;non_neuro_AN_male=11648;non_neuro_AF_male=8.30185e-02;non_neuro_nhomalt_male=37;AC_asj=35;AN_asj=290;AF_asj=1.20690e-01;nhomalt_asj=2;controls_AC_nfe_est=477;controls_AN_nfe_est=4086;controls_AF_nfe_est=1.16740e-01;controls_nhomalt_nfe_est=22;non_topmed_AC_asj_female=3;non_topmed_AN_asj_female=62;non_topmed_AF_asj_female=4.83871e-02;non_topmed_nhomalt_asj_female=0;non_topmed_AC_oth=94;non_topmed_AN_oth=1010;non_topmed_AF_oth=9.30693e-02;non_topmed_nhomalt_oth=5;non_topmed_AC_fin_female=271;non_topmed_AN_fin_female=1838;non_topmed_AF_fin_female=1.47443e-01;non_topmed_nhomalt_fin_female=20;AC_oth=102;AN_oth=1086;AF_oth=9.39227e-02;nhomalt_oth=5;non_neuro_AC_nfe_male=799;non_neuro_AN_nfe_male=7616;non_neuro_AF_nfe_male=1.04911e-01;non_neuro_nhomalt_nfe_male=27;controls_AC_female=414;controls_AN_female=5002;controls_AF_female=8.27669e-02;controls_nhomalt_female=17;non_topmed_AC_fin=478;non_topmed_AN_fin=3468;non_topmed_AF_fin=1.37832e-01;non_topmed_nhomalt_fin=36;non_topmed_AC_nfe_female=618;non_topmed_AN_nfe_female=5598;non_topmed_AF_nfe_female=1.10397e-01;non_topmed_nhomalt_nfe_female=23;controls_AC_asj_male=2;controls_AN_asj_male=14;controls_AF_asj_male=1.42857e-01;controls_nhomalt_asj_male=0;non_topmed_AC_asj_male=12;non_topmed_AN_asj_male=76;non_topmed_AF_asj_male=1.57895e-01;non_topmed_nhomalt_asj_male=0;non_neuro_AC_oth=71;non_neuro_AN_oth=732;non_neuro_AF_oth=9.69945e-02;non_neuro_nhomalt_oth=4;AC_male=1289;AN_male=17444;AF_male=7.38936e-02;nhomalt_male=52;controls_AC_fin_female=87;controls_AN_fin_female=552;controls_AF_fin_female=1.57609e-01;controls_nhomalt_fin_female=6;controls_AC_asj_female=1;controls_AN_asj_female=24;controls_AF_asj_female=4.16667e-02;controls_nhomalt_asj_female=0;AC_amr_male=14;AN_amr_male=434;AF_amr_male=3.22581e-02;nhomalt_amr_male=1;AC_amr_female=9;AN_amr_female=414;AF_amr_female=2.17391e-02;nhomalt_amr_female=0;AC_oth_male=46;AN_oth_male=524;AF_oth_male=8.77863e-02;nhomalt_oth_male=2;non_neuro_AC_nfe_seu=2;non_neuro_AN_nfe_seu=54;non_neuro_AF_nfe_seu=3.70370e-02;non_neuro_nhomalt_nfe_seu=0;non_topmed_AC_afr_female=67;non_topmed_AN_afr_female=3612;non_topmed_AF_afr_female=1.85493e-02;non_topmed_nhomalt_afr_female=0;non_topmed_AC_afr=167;non_topmed_AN_afr=8544;non_topmed_AF_afr=1.95459e-02;non_topmed_nhomalt_afr=1;controls_AC=878;controls_AN=10856;controls_AF=8.08769e-02;controls_nhomalt=41;non_neuro_AC_oth_female=35;non_neuro_AN_oth_female=364;non_neuro_AF_oth_female=9.61538e-02;non_neuro_nhomalt_oth_female=2;non_topmed_faf95_amr=1.83865e-02;non_topmed_faf99_amr=1.83872e-02;faf95_afr=1.69148e-02;faf99_afr=1.69145e-02;controls_faf95_afr=1.34271e-02;controls_faf99_afr=1.34270e-02;faf95_amr=1.85367e-02;faf99_amr=1.85368e-02;faf95_eas=0.00000e+00;faf99_eas=0.00000e+00;faf95=7.48535e-02;faf99=7.48541e-02;non_neuro_faf95_afr=1.28081e-02;non_neuro_faf99_afr=1.28087e-02;non_neuro_faf95_amr=1.66897e-02;non_neuro_faf99_amr=1.66898e-02;controls_faf95_nfe=1.04079e-01;controls_faf99_nfe=1.04079e-01;non_topmed_faf95=7.13334e-02;non_topmed_faf99=7.13338e-02;non_neuro_faf95_nfe=1.01439e-01;non_neuro_faf99_nfe=1.01439e-01;non_neuro_faf95=8.03470e-02;non_neuro_faf99=8.03471e-02;non_topmed_faf95_nfe=1.02553e-01;non_topmed_faf99_nfe=1.02553e-01;controls_faf95_eas=0.00000e+00;controls_faf99_eas=0.00000e+00;faf95_nfe=1.01049e-01;faf99_nfe=1.01049e-01;non_topmed_faf95_eas=0.00000e+00;non_topmed_faf99_eas=0.00000e+00;controls_faf95_amr=1.33541e-02;controls_faf99_amr=1.33544e-02;non_neuro_faf95_eas=0.00000e+00;non_neuro_faf99_eas=0.00000e+00;non_topmed_faf95_afr=1.71260e-02;non_topmed_faf99_afr=1.71258e-02;controls_faf95=7.64398e-02;controls_faf99=7.64402e-02;controls_popmax=nfe;controls_AC_popmax=613;controls_AN_popmax=5504;controls_AF_popmax=1.11374e-01;controls_nhomalt_popmax=25;popmax=nfe;AC_popmax=1621;AN_popmax=15392;AF_popmax=1.05314e-01;nhomalt_popmax=57;age_hist_het_bin_freq=105|106|166|234|289|221|173|108|56|15;age_hist_het_n_smaller=251;age_hist_het_n_larger=7;age_hist_hom_bin_freq=3|3|5|12|10|10|8|8|4|0;age_hist_hom_n_smaller=12;age_hist_hom_n_larger=1;non_neuro_popmax=nfe;non_neuro_AC_popmax=1440;non_neuro_AN_popmax=13586;non_neuro_AF_popmax=1.05991e-01;non_neuro_nhomalt_popmax=49;non_topmed_popmax=nfe;non_topmed_AC_popmax=1190;non_topmed_AN_popmax=11056;non_topmed_AF_popmax=1.07634e-01;non_topmed_nhomalt_popmax=46;vep=-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000292303|protein_coding|2/2||ENST00000292303.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000292303.4:p.Ser185IlefsTer32|697-728|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000292303|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||Prints_domain:PR01110&Prints_domain:PR01110&Superfamily_domains:SSF81321&Gene3D:1.20.1070.10&Pfam_domain:PF00001&hmmpanther:PTHR24227&hmmpanther:PTHR24227:SF45&PROSITE_profiles:PS50262|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000343801|protein_coding|3/3||ENST00000343801.4:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000343985.4:p.Ser185IlefsTer32|908-939|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606|YES|||CCDS2739.1|ENSP00000343985|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Gene3D:1.20.1070.10&Pfam_domain:PF00001&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC|||GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-561&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|frameshift_variant|HIGH|CCR5|ENSG00000160791|Transcript|ENST00000445772|protein_coding|1/1||ENST00000445772.1:c.554_585delGTCAGTATCAATTCTGGAAGAATTTCCAGACA|ENSP00000404881.1:p.Ser185IlefsTer32|784-815|551-582|184-194|YSQYQFWKNFQ/X|tACAGTCAGTATCAATTCTGGAAGAATTTCCAG/t|rs562091107&COSM1423390|1||1||deletion|1|HGNC|1606||||CCDS2739.1|ENSP00000404881|P51681|Q9UBT9&Q9P1T4&Q5KSY4&Q5EKN0&Q38L21&J7HJP8&E7BJ57&B8LFP0&B8LFN8&A1A490|UPI000000D955|1|||PROSITE_profiles:PS50262&hmmpanther:PTHR24227:SF45&hmmpanther:PTHR24227&Pfam_domain:PF00001&Gene3D:1.20.1070.10&Superfamily_domains:SSF81321&Prints_domain:PR01110&Prints_domain:PR01110|3|-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1||||||HC||SINGLE_EXON|GERP_DIST:923.849800000004&BP_DIST:508&PERCENTILE:0.54957507082153&DIST_FROM_LAST_EXON:-783&50_BP_RULE:FAIL&PHYLOCSF_TOO_SHORT,-|intron_variant&non_coding_transcript_variant|MODIFIER|RP11-24F11.2|ENSG00000223552|Transcript|ENST00000451485|antisense||2/3|ENST00000451485.1:n.392-2067_392-2036delCTGGAAATTCTTCCAGAATTGATACTGACTGT|||||||rs562091107&COSM1423390|1||-1||deletion|1|Clone_based_vega_gene||YES|||||||||||||-:0.0292||-:0.003|-:0.0317|-:0|-:0.1103|-:0.0092|-:0.0136|-:0.0847||||||||||0&1|0&1|||||||||
--- a/test-data/results/Nonessential_Host_Genes_Basic.txt Fri Jun 11 21:08:17 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -HGNC_Symbol Status -CCR5 HC LoF found -ALCAM HC LoF found, failed filtering
--- a/test-data/results/Nonessential_Host_Genes_Detailed.txt Fri Jun 11 21:08:17 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -Chromosome Position_Start RSID Reference_Allele Alternate_Allele Score Quality LoF_Variant LoF_Annotation HGNC_Symbol Ensembl Code african-AC african-AN african-AF ashkenazi-jewish-AC ashkenazi-jewish-AN ashkenazi-jewish-AF european-non-finnish-AC european-non-finnish-AN european-non-finnish-AF finnish-AC finnish-AN finnish-AF south-asian-AC south-asian-AN south-asian-AF latino-AC latino-AN latino-AF east-asian-AC east-asian-AN east-asian-AF other-AC other-AF other-AN male-AC male-AF male-AN female-AC female-AN female-AF -3 46414935 rs938517991 AT A 9974.16 PASS - frameshift_variant CCR5 ENSG00000160791 0 16192 0.0000000000e+00 0 10066 0.0000000000e+00 2 113380 1.7639800000e-05 0 21600 0.0000000000e+00 0 30616 0.0000000000e+00 0 34578 0.0000000000e+00 0 18394 0.0000000000e+00 0 0.0000000000e+00 6120 0 0.0000000000e+00 135678 2 115268 1.7350900000e-05 -3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 74264261.52 PASS - frameshift_variant CCR5 ENSG00000160791 311 16196 1.9202300000e-02 1296 10068 1.2872500000e-01 12203 113462 1.0755100000e-01 2881 21580 1.3350300000e-01 489 30610 1.5975200000e-02 1014 34580 2.9323300000e-02 2 18392 1.0874300000e-04 444 7.2572700000e-02 6118 10108 7.4499900000e-02 135678 8532 115328 7.3980300000e-02 -3 46415066 rs146972949 C T 120238.89 PASS T stop_gained CCR5 ENSG00000160791 23 16252 1.4152100000e-03 0 10016 0.0000000000e+00 8 113418 7.0535500000e-05 0 21590 0.0000000000e+00 0 30566 0.0000000000e+00 3 34516 8.6916200000e-05 0 18382 0.0000000000e+00 0 0.0000000000e+00 6108 14 1.0326900000e-04 135568 20 115280 1.7349100000e-04 -3 46414943 rs775750898 TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 1947603.90 PASS - frameshift_variant CCR5 ENSG00000160791 168 8706 1.9297000000e-02 35 290 1.2069000000e-01 1621 15392 1.0531400000e-01 478 3468 1.3783200000e-01 - - - 23 848 2.7122600000e-02 0 1558 0.0000000000e+00 102 9.3922700000e-02 1086 1289 7.3893600000e-02 17444 1138 13904 8.1847000000e-02