Mercurial > repos > nml > metaspades

comparison metaspades.xml @ 12:6563e22a9fd0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 35f71aa486d8754ee6a8387659032fc7c93d1be3
author iuc
date Wed, 10 Aug 2022 13:16:25 +0000
parents f338e9942b27
children fd128c111ab0
comparison
equal deleted inserted replaced
11:606b09cc9860 12:6563e22a9fd0
14 #if $additional_reads.selector == 'true' 14 #if $additional_reads.selector == 'true'
15 @PREPROCESS_INPUT_FILES_ADDITIONAL@ 15 @PREPROCESS_INPUT_FILES_ADDITIONAL@
16 #end if 16 #end if
17 @PREPROCESS_NANOPORE_PACBIO_FILES@ 17 @PREPROCESS_NANOPORE_PACBIO_FILES@
18 18
19 @OMP_THREADS@
19 ## run 20 ## run
20 metaspades.py 21 metaspades.py
21 -o 'output' 22 -o 'output'
22 @RESOURCES@ 23 @RESOURCES@
23 @INPUT_READS_MAIN@ 24 @INPUT_READS_MAIN@
183 @HELP_OUT_SP@ 184 @HELP_OUT_SP@
184 @HELP_OUT_SS@ 185 @HELP_OUT_SS@
185 186
186 **References** 187 **References**
187 188
188 More information can be found on `github <https://github.com/ablab/spades>`_ and on the `project website <http://cab.spbu.ru/software/meta-spades>`_. 189 More information can be found on `github <https://github.com/ablab/spades>`_.
189 ]]></help> 190 ]]></help>
190 <expand macro="citations"> 191 <expand macro="citations">
191 <citation type="doi">10.1101/gr.213959.116</citation> 192 <citation type="doi">10.1101/gr.213959.116</citation>
192 </expand> 193 </expand>
193 </tool> 194 </tool>