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comparison metaspades.xml @ 14:f369ef5f210b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 066e075c1599b29e92708194db2b2ccc30b7677c
author iuc
date Mon, 12 Feb 2024 21:46:17 +0000
parents fd128c111ab0
children
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13:fd128c111ab0 14:f369ef5f210b
1 <tool id="metaspades" name="metaSPAdes" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="metaspades" name="metaSPAdes" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <description>metagenome assembler</description> 2 <description>metagenome assembler</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <xrefs>
7 <xref type="bio.tools">metaspades</xref>
8 </xrefs>
6 <expand macro="requirements"/> 9 <expand macro="requirements"/>
7 <expand macro="stdio"/> 10 <expand macro="stdio"/>
8 <expand macro="version_command"/> 11 <expand macro="version_command"/>
9 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
10 13
36 @CORRECTED@ 39 @CORRECTED@
37 ]]></command> 40 ]]></command>
38 <inputs> 41 <inputs>
39 <expand macro="input_files_paired" format="fastq,fastq.gz,fastqsanger.gz" label="FASTQ file(s)"/> 42 <expand macro="input_files_paired" format="fastq,fastq.gz,fastqsanger.gz" label="FASTQ file(s)"/>
40 <expand macro="input_additional_files_paired" format="fastq,fastq.gz,fastqsanger.gz" label="FASTQ file(s)"/> 43 <expand macro="input_additional_files_paired" format="fastq,fastq.gz,fastqsanger.gz" label="FASTQ file(s)"/>
41 <section name="arf" title="Additional read files">
42 <expand macro="nanopore_pacbio"/>
43 </section>
44 <section name="arf" title="Additional read files"> 44 <section name="arf" title="Additional read files">
45 <expand macro="nanopore_pacbio"/> 45 <expand macro="nanopore_pacbio"/>
46 </section> 46 </section>
47 <expand macro="kmer"/> 47 <expand macro="kmer"/>
48 <expand macro="phred"/> 48 <expand macro="phred"/>