Mercurial > repos > nml > mob_suite
comparison mob_typer.xml @ 8:53f50adcb78e draft
"planemo upload for repository https://github.com/phac-nml/mob-suite commit 314c26f1f5e22511c6f406cd9b7108f873cec295"
| author | nml |
|---|---|
| date | Sat, 28 Nov 2020 20:38:47 +0000 |
| parents | 822575bf359f |
| children |
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| 7:822575bf359f | 8:53f50adcb78e |
|---|---|
| 1 <tool id="mob_typer" name="MOB-Typer" version="3.0.0"> | 1 <tool id="mob_typer" name="MOB-Typer" version="@VERSION@+galaxy0"> |
| 2 <description>Get the plasmid type and mobility given its sequence</description> | 2 <description>Get the plasmid type and mobility given its sequence</description> |
| 3 <requirements> | 3 <macros> |
| 4 <requirement type="package" version="3.0.0">mob_suite</requirement> | 4 <import>macros.xml</import> |
| 5 </requirements> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 6 <version_command>mob_typer --version</version_command> | 7 <version_command>mob_typer --version</version_command> |
| 7 <command detect_errors="exit_code"> | 8 <command detect_errors="exit_code"> |
| 8 <![CDATA[ | 9 <![CDATA[ |
| 9 ln -s '${input}' '${input.name}' && | 10 ln -s '${input}' '${input.name}' && |
| 10 mob_typer --num_threads \${GALAXY_SLOTS:-4} --infile '${input.name}' | 11 mob_typer --num_threads \${GALAXY_SLOTS:-4} --infile '${input.name}' |